@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : jhp_0114: (2015-12-12 )
MSRNEVLLNGDINFKEVRCVGDNGEVYGIISSKEALKIAQNLGLDLVLISASAKPPVCKVMDYNKFRYQNEKKIKEAKKKQKQIEIKEIKLSTQIAQNDINYKVKHAREFIESNKHVKFKVVLKGRESQNSKAGLDVLFRVQTMMQDLANPEKEPKTEGRFVSWMFVPKAKEAPKNEKKTKENNPPFNRINLMKGENHAKNED
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------........-.10........20..-......---.30........40..--......50..-.--.....60------........70.....----...80.....-----..---.90........-.100.....------..110.--....-..120-----.......130..-.....140........150---...-.-...160.......170.-......180.......190.......200.----------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------MSRN
E
V
L
L-NGDI
N
F
K
E
V
R
C
V-GD-NG
E
V
Y
G
---
I
IS
S
K
E
A
L
K
I
A
Q
NLG--L
D
L
V
L
I
SASA-K--P
P
V
C
K
VM------DY
N
K
FRYQ
N
E
K
K
I
K
E
----
A
K
K
K
Q
KQ
I
E
I
-----
K
E
---
I
K
-
L
S
T
Q
IAQN-DIN
Y
K
V
K
H
A
------
R
E
F
I
ES--NK
H
V
-
K
F
K
V
V
-----
L
KGRESQNSK
A
G
-
L
D
V
L
F
R
-
V
Q
T
M
M
Q
D
LANPE---KEP-K-TEG
R
F
V
S
W
M
F
VPKAKEA-PKNEKKTKENNPPFN
R
I
N
LMKGENHAKNED----------------------------------------------------------------------------------------------------------------------------
18
HHSearch
90.20
36%
-83
- C4 -
1TIG
-
IF3_GEOSE
A:
[83-170]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
N
V
-----
K
E
---
V
R
-
L
S
P
T
I
E
E
H
-
D
F
N
T
K
L
R
N
A
------
R
K
F
L
E
K
--
G
D
K
V
-
K
A
T
I
R
-----
F
K
G
R
A
I
T
H
K
E
I
G
-
Q
R
V
L
D
R
-
L
S
E
A
C
A
D
I
A
V
V
E
---
T
A
P
-
K
-
M
D
G
R
N
M
F
L
V
L
A
P
K
N
D
-------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
89.98
37%
-86
- C4 -
1TIG
-
IF3_GEOSE
A:
[83-168]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
N
V
-----
K
E
---
V
R
-
L
S
P
T
I
E
E
H
-
D
F
N
T
K
L
R
N
A
------
R
K
F
L
E
K
--
G
D
K
V
-
K
A
T
I
R
-----
F
K
G
R
A
I
T
H
K
E
I
G
-
Q
R
V
L
D
R
-
L
S
E
A
C
A
D
I
A
V
V
E
---
T
A
P
-
K
-
M
D
G
R
N
M
F
L
V
L
A
P
K
N
D
-------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
82.72
36%
-73
- C4 -
2IFE
-
IF3_ECOLI
A:
[90-179]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
I
Q
V
-----
K
E
---
I
K
-
F
R
P
G
T
D
E
G
-
D
Y
Q
V
K
L
R
S
L
------
I
R
F
L
E
E
--
G
D
K
A
-
K
I
T
L
R
-----
F
R
G
R
E
M
A
H
Q
Q
I
G
-
M
E
V
L
N
R
-
V
K
D
D
L
Q
E
L
A
V
V
E
---
S
F
P
-
T
K
I
E
G
R
Q
M
I
M
V
L
A
P
K
K
K
Q
------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
79.80
32%
-79
- C4 -
2IFE
-
IF3_ECOLI
A:
[95-180]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
---
I
K
-
F
R
P
G
T
D
E
G
-
D
Y
Q
V
K
L
R
S
L
------
I
R
F
L
E
E
--
G
D
K
A
-
K
I
T
L
R
-----
F
R
G
R
E
M
A
H
Q
Q
I
G
-
M
E
V
L
N
R
-
V
K
D
D
L
Q
E
L
A
V
V
E
---
S
F
P
T
K
-
I
E
G
R
Q
M
I
M
V
L
A
P
K
K
K
Q
------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
72.23
22%
-41
* C4 *
2CRQ
-
A:
[8-105]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
K
T
G
P
T
M
T
-----
K
E
---
L
V
-
F
S
S
N
I
G
Q
H
-
D
L
D
T
K
S
K
Q
I
------
Q
Q
W
I
E
K
--
K
Y
H
V
-
Q
V
T
I
K
-----
R
R
K
D
A
E
Q
S
E
E
E
T
-
E
E
I
F
N
Q
-
I
L
Q
T
M
P
D
I
A
T
F
S
---
S
R
P
-
K
A
I
R
G
G
T
A
S
M
C
V
F
R
H
L
S
K
K
-
E
E
K
S
G
P
S
S
G
-------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
67.23
25%
-50
- C4 -
2CRQ
-
A:
[16-85]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
E
---
L
V
-
F
S
S
N
I
G
Q
H
-
D
L
D
T
K
S
K
Q
I
------
Q
Q
W
I
E
K
--
K
Y
H
V
-
Q
V
T
I
K
-----
R
R
K
D
A
E
Q
S
E
E
E
T
-
E
E
I
F
N
Q
-
I
L
Q
T
M
P
D
I
A
T
F
S
---
S
R
P
-
K
-
A
I
R
G
G
T
A
S
M
C
V
F
R
H
L
S
K
-
K
E
E
K
S
G
P
S
S
G
------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
65.38
14%
21
- C3 -
3H05
1
?
B:
[1-177]
------------------------------------------------------------------------------------------------------------------------------------------
M
K
K
I
-
A
I
-
F
G
S
A
F
N
---
P
P
S
L
G
H
K
S
V
I
E
S
L
S
H
--
F
D
L
V
L
L
E
P
S
I
-
N
--
M
L
---------------
D
Y
P
I
R
C
K
L
V
D
A
----
F
I
K
D
M
G
L
S
N
V
-----
Q
R
---
S
D
-----
L
E
Q
A
-
L
Y
V
T
T
Y
A
L
L
------
E
K
I
Q
E
I
--
Y
P
T
A
-
D
I
T
F
V
I
G
P
D
N
F
F
K
F
A
K
F
Y
K
A
E
E
-
I
T
E
R
W
T
-
V
M
A
C
P
E
K
V
S
T
D
I
---
R
N
A
-
L
-
I
E
G
K
D
I
S
T
Y
T
T
P
T
V
S
E
L
-
L
L
N
E
-------------
G
L
Y
R
E
T
L
S
G
K
-------------------------------------------------------------------------------------------------------------------------------
34
Fugue
62.61
14%
46
* C3 *
1JP3
1
UPPS_ECOLI
A:
[13-240]
---------------------------------------------------------------------------------------------------------------------LPAH
G
C
R
H
V
A
I
I
M
D
G
N
G
R
W
A
K
K
Q
G
K
I
R
A
-
F
G
H
K
A
G
---
A
K
S
V
R
R
A
V
S
F
A
A
N
N
G
--
I
E
A
L
T
L
Y
A
F
S
M
E
--
L
F
V
W
A
L
D
------
S
E
V
K
S
L
H
R
H
N
V
R
L
R
I
I
G
--
D
T
S
R
F
N
S
R
L
Q
-----
E
R
---
I
R
-
K
S
E
A
L
T
A
G
-
N
T
G
L
T
L
N
I
A
A
NYG
G
R
W
D
I
V
Q
G
--
V
R
Q
L
-
A
E
K
V
Q
-----
Q
G
N
L
Q
P
D
Q
I
D
E
E
M
L
N
Q
H
V
C
M
H
E
L
A
P
V
D
L
V
I
R
T
---
G
G
E
-
H
-
R
I
S
N
F
L
L
W
Q
I
------
A
-
Y
A
E
L
Y
F
T
D
V
L
W
P
D
F
D
E
Q
D
F
E
G
A
L
N
A
F
A
N
R
E
----------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
58.66
30%
-109
- C4 -
3IWA
1
?
A:
[212-258]
-------------------------------------------------------------------------------------------------------------------------
L
E
K
N
D
V
V
V
-
H
--
T
G
E
K
V
V
R
L
E
-
G
E
-
N
G
K
V
A
R
---
V
I
T
D
K
------
R
T
L
D
--
A
D
L
V
I
L
A
A
G
V
-
S
--
P
N
T
Q
L
A
R
------
D
A
G
L
E
L
D
P
R
G
A
I
I
V
D
----
T
R
M
R
T
S
D
P
D
I
-----
F
A
---
G
G
-
D
C
V
T
I
P
N
L
-
V
T
G
K
P
G
F
F
P
------
L
G
S
M
A
N
--
R
Q
G
R
-
V
I
G
T
N
-----
L
A
D
G
D
A
T
F
P
G
A
V
-
G
S
W
A
V
K
-
L
F
E
G
S
A
S
G
A
G
L
T
---
V
E
G
-
A
-
L
R
E
G
Y
D
A
V
N
V
H
V
E
Q
I
M
T
-
L
Q
L
V
V
D
R
P
T
R
R
V
L
G
I
Q
G
F
S
T
L
G
D
A
L
T
A
R
I
N
----------------------------------------------------------------------------------------------------------------------------
37
Fugue
57.57
17%
13
- C1 -
3SKQ
6
MDM38_YEAST
A:
[23-249]
----------------------------------------------------------------------------------------------K
L
I
E
I
R
K
K
T
S
E
F
L
H
E
T
L
E
E
SNLITYNT
I
E
N
A
E
K
K
Q
-
K
F
L
N
F
F
R
K
L
Y
S
A
-
K
E
-
G
K
I
--
M
---
T
F
Q
H
D
E
I
S
A
I
A
Q
M
F
K
--
N
D
S
V
L
D
N
L
S
R
-
P
Q
L
A
A
M
S
K
F
M
S
L
R
P
F
G
N
D
N
M
L
R
Y
Q
I
R
S
K
L
K
D
----
I
M
N
D
D
K
T
I
D
Y
-----
E
G
---
V
E
S
L
S
Q
E
E
L
Y
Q
-
A
C
V
S
R
G
M
K
A
------
Y
G
V
S
K
E
--
D
L
V
D
-
N
L
K
V
W
-----
L
E
L
R
L
R
Q
K
I
P
S
V
-
L
M
V
L
S
S
-
T
F
T
F
------
G
G
---
L
P
K
-
E
-
N
Y
S
K
A
F
S
P
L
A
E
K
K
E
T
K
S
-
K
Y
D
D
L
L
D
L
Y
Y
D
G
I
L
Q
V
L
S
S
I
P
D
P
V
Y
N
--------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
56.04
11%
-38
- C4 -
2JVF
-
?
A:
[14-87]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
---
I
E
-
I
D
I
R
V
S
T
G
K
E
L
E
R
A
L
Q
E
L
------
E
K
A
L
A
R
A
-
G
A
R
N
V
Q
I
T
I
S
-----
A
E
-----
N
D
E
Q
A
-
K
E
L
L
E
L
-
I
A
R
L
L
Q
K
L
G
Y
K
D
---
I
N
V
-
R
-
V
N
G
T
E
V
K
I
E
V
R
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------
33
Fugue
55.29
16%
45
- C3 -
4ZJF
5
?
A:
[12-172]
--------------------------------------------------------------------------------------------------------------------------
T
L
N
M
T
M
P
-
L
S
--------
C
T
-
K
N
-
N
-----------
S
H
H
Y
I
M
V
G
N
E
T
G
--
L
E
L
T
L
T
N
T
S
----------
I
I
------
N
H
K
F
C
N
L
S
D
A
H
K
K
N
L
----
Y
D
H
A
L
M
S
I
-
I
-----
S
T
---
F
H
-
L
S
I
P
---
N
-
F
N
Q
Y
E
-
A
M
S
------
C
D
F
N
G
G
--
K
I
S
V
-
Q
Y
N
L
S
-----
H
S
Y
A
G
D
A
A
N
H
C
G
--
T
V
A
N
G
-
V
L
Q
T
F
M
R
M
A
W
G
G
---
S
Y
I
-
A
-
L
D
S
G
R
G
N
W
D
C
I
M
T
S
Y
Q
Y
-
L
I
I
Q
N
T
T
W
E
D
H
C
Q
F
S
R
P
S
----------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
54.94
33%
68
* C5 *
4OY4
-
A:
[350-385]
--------------------------------------------------------------------------------------------------------------------------
A
R
N
D
I
T
M
-
E
G
D
T
F
Y
N
K
V
R
F
Y
-
G
T
-
N
F
P
A
N
G
---
P
V
M
Q
K
K
T
L
K
W
M
P
S
W
T
--
R
S
S
R
R
K
W
N
K
T
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
Fugue
52.76
13%
35
- C3 -
4MTU
2
?
A:
[1-143]
-------------------------------------------------------------------------------------------------------------------------
M
V
G
K
K
V
V
H
-
H
L
M
M
S
A
K
D
A
H
Y
T
-
G
-------
N
---
L
V
N
G
A
R
I
V
N
Q
W
G
D
V
G
--
T
E
L
M
V
Y
V
D
G
---------------------------------------
D
I
S
L
F
L
G
Y
-----
K
D
---
I
E
-
F
T
A
P
V
Y
V
G
-
D
F
M
E
Y
H
G
W
I
------
E
K
V
G
N
Q
--
S
Y
T
C
-
K
F
E
A
W
-----
K
V
A
K
M
V
D
I
T
N
P
Q
-------------
D
T
R
A
T
A
C
---
E
P
P
-
V
-
L
C
G
T
A
T
G
S
L
F
I
A
K
D
N
Q
R
-
G
P
Q
E
S
S
F
K
D
A
K
H
P
---------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
51.49
13%
61
- C2 -
3M6W
2
RSMF_THET8
A:
[4-460]
LP
K
A
F
L
S
R
M
A
E
L
L
GEE
F
P
A
F
L
K
A
L
T
E
G
K
R
T
Y
G
L
R
V
NTLKLP
P
E
A
F
Q
R
I
SP
W
P
L
R
P
IPWCQE
G
F
Y
Y
P
EEARPGPH
P
F
F
Y
A
GLYYIQE
P
S
A
Q
A
V
G
V
L
L
DPKPG
E
R
V
L
DLAAAPG
G
K
T
T
H
L
A
A
R
M
G
G
K
G
L
L
L
-
A
N
E
V
D
G
K
R
V
R
G
L
-
L
E
-
N
V
E
R
W
G
A
P
L
A
V
T
Q
A
P
P
R
A
L
A
E
A
F
G
TY
F
H
R
V
L
L
D
A
P
C
-
S
--
G
E
G
M
F
R
K
------
D
R
E
A
A
R
H
W
G
P
S
A
P
K
R
----
M
A
E
V
Q
K
A
L
L
A
-----
Q
A
S
R
L
L
G
-
P
G
G
V
L
V
Y
S
-
T
C
T
F
A
P
E
E
N
------
E
G
V
V
A
H
F
L
K
A
H
P
-
E
F
R
L
E
-----
D
A
R
L
H
P
L
F
A
P
G
V
-
P
E
W
G
E
G
-
N
P
E
L
L
K
T
A
R
L
W
P
---
H
R
L
-
E
-
G
E
G
H
F
L
A
R
F
R
K
E
G
G
A
W
S
T
P
R
L
E
R
P
S
P
L
S
Q
E
A
L
R
A
F
R
G
F
L
E
E
A
G
L
T
L
E
G
P
V
L
D
R
AGHLYLLPEGLPTLLGLKAPAPGLYL
G
K
V
Q
KG
R
F
L
P
A
R
A
L
A
L
A
FGATLPWPEG
L
P
R
L
A
L
T
PED
P
R
A
L
A
F
A
T
G
E
G
V
A
W
E
G
E
D
H
P
L
A
L
V
V
L
K
T
AAGEFPL
D
F
G
K
A
K
RG
V
L
R
P
V
G
V
G
L
R
S
H
H
36
Fugue
49.37
14%
39
- C3 -
1REG
-
REGA_BPT4
X:
[1-122]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
E
I
T
L
K
K
P
E
D
F
L
K
----
V
K
E
T
L
T
R
M
G
I
ANNKD
K
V
---
L
Y
-
Q
S
C
H
I
L
Q
K
-
K
G
L
Y
Y
I
V
H
F
------
K
E
M
L
R
M
--
D
----------------
G
R
Q
V
E
M
T
E
E
D
-
E
V
R
R
D
S
-
I
A
W
L
L
E
D
W
G
L
I
E
IVP
G
Q
R
-
T
-
F
M
K
D
L
T
N
N
F
R
V
I
S
F
K
Q
K
-
H
E
W
K
L
V
P
K
Y
T
I
G
N
---------------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
45.70
23%
-38
- C4 -
2HC5
-
YVYC_BACSU
A:
[59-98]
-----------------------------------------------------------------------------------------------------------------------------
K
F
E
L
-
H
D
K
L
N
E
Y
Y
V
K
V
I
-
E
D
S
T
N
E
V
I
R
---
E
I
P
P
K
R
W
L
D
F
Y
A
A
M
T
--
E
F
L
G
L
F
V
D
E
K
-
K
--
L
E
H
H
H
H
H
------
H
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
45.57
30%
188
- C- -
1I96
-
IF3_THET8
V:
[1-86]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
V
-----
K
S
---
I
K
-
F
R
V
K
I
D
E
H
-
D
Y
Q
T
K
L
G
H
I
------
K
R
F
L
Q
E
--
G
H
K
V
-
K
V
T
I
M
-----
F
R
G
R
E
V
A
H
P
E
L
G
-
E
R
I
L
N
R
-
V
T
E
D
L
K
D
L
A
V
V
E
---
M
K
P
-
E
-
M
L
G
R
D
M
N
M
L
L
A
P
V
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
43.25
30%
202
- C- -
1I96
-
IF3_THET8
V:
[1-84]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
V
-----
K
S
---
I
K
-
F
R
V
K
I
D
E
H
-
D
Y
Q
T
K
L
G
H
I
------
K
R
F
L
Q
E
--
G
H
K
V
-
K
V
T
I
M
-----
F
R
G
R
E
V
A
H
P
E
L
G
-
E
R
I
L
N
R
-
V
T
E
D
L
K
D
L
A
V
V
E
---
M
K
P
-
E
-
M
L
G
R
D
M
N
M
L
L
A
P
V
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
41.74
24%
-3
- C4 -
1IVS
-
SYV_THETH
A:
[751-823]
-----------------------------------------------------------------------------------------------------------------------------------------
E
T
A
P
V
-
E
E
-
N
L
E
V
F
R
---
F
L
S
R
A
D
L
L
P
E
R
P
A
K
A
--
L
V
K
A
M
P
R
V
T
A
-
R
--
M
P
L
E
G
L
L
------
D
V
E
E
W
R
R
R
Q
E
K
R
L
K
E
L
L
A
L
A
E
R
S
Q
R
K
L
A
S
-----
P
G
---
F
R
-
E
K
A
P
K
E
V
V
-
E
A
E
E
A
R
L
K
E
------
N
L
E
Q
A
E
--
R
I
R
E
-
A
L
S
Q
I
-----
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------