@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : jhp_0747: (2015-12-18 )
MKIFLSCKSLLIQRSLEFYLSDCLSPVEVCDLVLSDDEKLETNKPLCFIEERLRKPFTKQSVKEDIKNFYRALKISEKPCEEIQFSKEQKIKQLLEEYTHKLCQIISQ
Atome Classification :
(20 SA)
-...-.....-----.-----10---------.....--.-.-..20-------....------------...---.-----30.........40.------..---------------.....-50.--..-...-------..60........70........80........90.....-----...100......----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-
M
K
I
-
F
L
S
C
K
-----
S
-----
L
----------
L
I
Q
R
S
--
L
-
E
-
F
Y
L
S
-------
D
CL
S
------------
P
V
E
---
V
-----
C
-
D
L
VLSDDEKLET------NK---------------P
L
C
F
I
-
E
E
R
--
L
R-KPF-------
T
K
Q
S
V
K
E
D
I
K
N
F
Y
R
A
LKISEK
P
C
E
E
IQF
S
K
E
Q
K
I
K
Q
L
L
E
-----
E
Y
T
H
K
L
C
Q
I
ISQ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
73.36
20%
-87
- C6 -
1KU1
-
GEA2_YEAST
A:
[632-671]
--------------------------------------------------------------------------------------------------------------------------------------
D
F
-------
S
G
L
R
V
D
E
A
I
R
I
L
L
T
K
F
R
L
P
G
E
---------
S
Q
Q
I
E
R
I
I
E
-----
A
F
S
S
A
Y
C
E
N
Q
D
Y
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
36
Fugue
66.69
17%
-38
- C6 -
1U6T
1
SH3L1_HUMAN
A:
[1-121]
V
I
R
V
-
Y
I
A
S
S
-----
S
GS
T
A
I
K
----------
K
K
Q
Q
D
--
V
-
L
-
G
F
L
E
-------
A
N
K
I
------------
G
F
E
---
E
-----
K
-
D
I
A
A
N
E
E
N
R
K
W
M
------
R
E
N
VPENSRPATGYPLP
P
Q
I
F
N
-
E
S
Q
--
Y
R
-
G
D
Y
-------
D
A
F
F
E
A
R
E
N
N
A
V
Y
A
F
L
G
L
T
A
P
P
G
S
--
K
E
A
E
V
Q
A
K
Q
Q
A
L
E
-----
H
H
H
H
H
H
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_CBE
63.59
36%
-79
- C6 -
3E15
2
?
B:
[66-126]
---------------------------------------------
L
S
-------
G
G
K
T
------------
P
I
D
---
V
-----
Y
K
N
I
A
L
V
K
D
I
K
I
D
T
------
S
K
---------------
L
I
F
F
I
I
D
E
R
--
Y
K
-
R
D
D
-------
H
K
F
S
N
Y
N
N
I
K
F
L
F
E
S
L
K
I
N
E
K
E
Q
L
Y
R
P
D
T
S
K
N
I
V
E
C
V
R
D
-----
Y
N
E
K
I
K
N
M
V
K
K
Y
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_CBE
61.47
36%
-74
- C6 -
3E15
2
?
D:
[66-126]
---------------------------------------------
L
S
-------
G
G
K
T
------------
P
I
D
---
V
-----
Y
K
N
I
A
L
V
K
D
I
K
I
D
T
------
S
K
---------------
L
I
F
F
I
I
D
E
R
--
Y
K
-
R
D
D
-------
H
K
F
S
N
Y
N
N
I
K
F
L
F
E
S
L
K
I
N
E
K
E
Q
L
Y
R
P
D
T
S
K
N
I
V
E
C
V
R
D
-----
Y
N
E
K
I
K
N
M
V
K
K
Y
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_CBE
61.32
36%
-75
- C6 -
3E15
2
?
C:
[66-126]
---------------------------------------------
L
S
-------
G
G
K
T
------------
P
I
D
---
V
-----
Y
K
N
I
A
L
V
K
D
I
K
I
D
T
------
S
K
---------------
L
I
F
F
I
I
D
E
R
--
Y
K
-
R
D
D
-------
H
K
F
S
N
Y
N
N
I
K
F
L
F
E
S
L
K
I
N
E
K
E
Q
L
Y
R
P
D
T
S
K
N
I
V
E
C
V
R
D
-----
Y
N
E
K
I
K
N
M
V
K
K
Y
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
60.89
36%
-69
- C6 -
3E15
2
?
A:
[66-126]
---------------------------------------------
L
S
-------
G
G
K
T
------------
P
I
D
---
V
-----
Y
K
N
I
A
L
V
K
D
I
K
I
D
T
------
S
K
---------------
L
I
F
F
I
I
D
E
R
--
Y
K
-
R
D
D
-------
H
K
F
S
N
Y
N
N
I
K
F
L
F
E
S
L
K
I
N
E
K
E
Q
L
Y
R
P
D
T
S
K
N
I
V
E
C
V
R
D
-----
Y
N
E
K
I
K
N
M
V
K
K
Y
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
59.05
23%
-82
- C6 -
1R8S
4
CYH2_HUMAN
E:
[85-123]
--------------------------------------------------------------------------------------------------------------------------------------
E
F
-------
T
D
L
N
L
V
Q
A
L
R
Q
F
L
W
S
F
R
L
P
G
K
---------
A
Q
K
I
D
R
M
M
E
-----
A
F
A
Q
R
Y
C
L
C
N
P
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
56.43
21%
-92
- C6 -
1VKR
-
PTM3C_ECOLI
A:
[378-453]
-
R
K
I
-
I
V
A
C
D
AGMGS
S
-----
A
----------
M
G
A
G
V
--
L
-
R
-
K
K
I
Q
-------
D
A
G
L
SQ
I
S
V
T
N
S
A
INN
L
P
P
---
D
-----
V
-
D
L
V
I
T
H
R
D
L
T
E
R
A
M
R
Q
V
P
Q
A
---------------
Q
H
I
S
L
-
T
N
F
--
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
56.36
33%
32
- C6 -
1GKU
-
RGYR_ARCFU
B:
[744-800]
------------------------------------------------------------------------------------
D
L
V
L
E
H
D
E
E
-
E
F
------
D
L
---------------
T
I
K
L
V
-
E
E
R
EE
L
R
-
T
P
L
-------
P
P
Y
T
T
E
T
M
L
S
D
A
N
R
I
L
K
F
S
V
K
--
Q
T
M
Q
I
A
Q
E
L
F
E
N
G
L
I
T
-----
Y
H
R
T
D
S
T
R
V
S
D
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
55.81
26%
-3
- C6 -
3Q5I
2
?
A:
[427-499]
------------------------------------------------------------------------------------------------------
D
K
---------------
Q
I
L
F
S
-
E
E
R
--
L
R
-
R
A
F
N
L
F
D
TDK
S
G
K
I
T
K
E
E
L
A
N
L
F
G
L
T
S
I
S
E
K
T
W
N
D
V
L
G
E
A
D
Q
N
K
D
N
M
I
D
F
D
E
F
V
S
M
M
H
K
I
C
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
53.21
18%
-74
- C6 -
3LTL
3
BIG1_HUMAN
A:
[91-130]
--------------------------------------------------------------------------------------------------------------------------------------
D
F
-------
S
G
K
D
F
V
S
A
L
R
M
F
L
E
G
F
R
L
P
G
E
---------
A
Q
K
I
D
R
L
M
E
-----
K
F
A
A
R
Y
L
E
C
N
Q
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
51.81
33%
31
- C6 -
1GL9
-
RGYR_ARCFU
B:
[744-800]
------------------------------------------------------------------------------------
D
L
V
L
E
H
D
E
E
-
E
F
------
D
L
---------------
T
I
K
L
V
-
E
E
R
EE
L
R
-
T
P
L
-------
P
P
Y
T
T
E
T
M
L
S
D
A
N
R
I
L
K
F
S
V
K
--
Q
T
M
Q
I
A
Q
E
L
F
E
N
G
L
I
T
-----
Y
H
R
T
D
S
T
R
V
S
D
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
47.32
16%
-50
- C2 -
3F62
-
?
A:
[18-125]
G
A
M
V
-
E
T
K
C
P
-----
N
-----
L
----------
D
I
V
T
S
--
S
G
E
-
F
H
C
S
-------
G
C
V
E
------------
H
M
P
EF
S
Y
-----
M
-
Y
W
L
A
K
D
M
K
S
D
E
D
------
T
K
---------------
F
I
E
H
L
-
G
D
G
--
I
N
-
E
D
E
-------
T
V
R
T
T
D
G
G
I
T
T
L
R
K
V
L
H
V
T
D
T
N
----
K
F
A
H
-
Y
R
F
T
C
V
L
T
-----
T
L
D
G
V
S
K
K
N
I
W
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
46.40
24%
-29
- C6 -
2C4K
-
KPRA_HUMAN
A:
[137-197]
---------------------------------------------
L
A
-------
S
M
L
A
------------
K
A
G
---
L
-----
T
-
H
I
I
T
M
D
L
H
Q
K
E
I
------
Q
G
---------------
F
F
S
F
P
-
V
D
N
--
L
R
A
S
P
F
-------
L
L
Q
Y
I
Q
E
E
I
P
N
Y
R
N
A
V
I
V
A
K
S
P
D
A
A
K
R
A
Q
S
Y
A
E
R
L
R
L
G
L
-----
A
V
I
H
P
P
I
T
V
V
G
D
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
45.17
21%
-48
- C6 -
4X7P
8
?
A:
[1-493]
M
K
K
I
-
F
M
M
V
H
-----
E
-----
L
DVNKG
G
M
T
S
S
M
F
N
R
S
--
K
-
E
-
F
Y
D
A
-------
D
I
P
-------------------------
A
-
D
I
V
T
F
D
Y
K
G
N
-------------------------------
Y
D
E
--
I
I
-
K
A
L
-------
K
K
Q
G
K
M
D
R
R
T
K
M
Y
N
V
F
E
Y
F
K
Q
I
S
N
N
K
H
F
K
S
N
K
L
L
Y
K
H
I
S
-----
E
R
L
K
N
T
I
E
I
E
E
S
KG
I
S
R
Y
F
D
ITTGTYI
A
Y
I
R
K
S
KS
E
K
V
I
D
F
F
K
DNKRI
E
R
F
S
F
I
DNKVH
M
K
E
T
F
N
VDNKVC
Y
Q
V
F
Y
D
EKGYPY
I
S
R
N
I
NANNGAV
G
K
T
Y
VLVNKKEFKN
N
L
A
L
C
V
Y
Y
L
E
K
L
I
KDSKD
S
I
M
I
C
DGPGS
F
P
K
M
F
N
TNHKN
A
Q
K
Y
G
V
I
HVNHHENFDDTGAFK
K
S
E
K
Y
I
I
E
N
A
NKIN
G
V
I
V
LT
E
A
Q
R
L
D
I
L
N
Q
F
DVEN
I
F
T
I
S
N
FVKIHNAPKHFQTEK
I
V
G
H
I
S
R
MVPTKR
I
D
L
L
I
E
V
A
E
L
V
V
K
K
DNA
V
K
F
H
I
Y
G
E
G
SV
K
D
K
I
A
K
M
I
E
D
K
NLERNVFLKGYTTT
P
Q
K
C
L
E
D
FK
L
V
V
S
TSQYEGQG
L
S
M
I
E
A
M
I
S
K
R
P
V
V
A
F
DIKYGPSDFIEDNKNGYLIENHN
I
N
D
M
A
D
K
I
L
Q
L
V
N
N
D
V
L
A
A
E
F
G
S
K
A
R
E
N
I
I
E
K
Y
S
T
E
S
I
L
E
K
W
L
N
L
F
N
S
10
PsiBlast_CBE
42.64
38%
-140
- C4 -
5CAW
2
?
C:
[211-256]
--
R
V
-
Q
C
S
C
G
-----
Y
-----
V
----------
F
C
G
K
C
--
L
-
E
G
F
H
L
G
-------
E
C
L
N
------------
P
T
D
---
V
PFLSQ----
P
L
-
D
P
E
K
L
E
K
------
A
R
---------------
W
D
E
A
S
-
S
T
V
--
I
K
-
V
L
T
-------
K
P
C
P
K
C
R
T
S
T
E
R
A
G
G
C
M
H
M
I
C
T
R
A
N
C
G
F
H
W
C
W
V
C
Q
G
P
W
E
-----
R
D
C
M
A
S
H
W
F
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
HHSearch
39.72
20%
-106
- C6 -
2YWQ
-
?
A:
[1-63]
-
M
N
I
Y
K
L
I
G
R
-----
N
-----
L
----------
E
I
T
D
A
--
I
-
R
-
D
Y
V
E
K
K
L
A
R
L
D
R
Y
Q
D
------------
G
E
L
---
M
-----
A
-
K
V
V
L
S
L
A
G
----------------------------
K
A
R
A
-
E
I
Q
--
V
D
-
L
P
G
-------
G
L
V
R
V
E
E
E
D
A
D
L
Y
A
A
I
D
R
A
V
D
R
L
E
T
Q
V
K
R
F
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
33.74
25%
10
- C6 -
2CPG
1
COPG_STRAG
A:
[1-43]
-------------------------------------------------------------------------------------------------------------------------------------------------
M
K
K
R
L
T
I
T
L
S
E
S
V
L
E
N
L
E
K
M
A
R
E
M
G
L
S
K
S
A
M
I
S
V
A
L
E
-----
N
Y
K
K
G
Q
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
31.07
20%
-152
- C5 -
3ONO
-
?
A:
[4-30]
-
M
K
I
-
A
L
M
M
E
-----
N
-----
S
----------
Q
A
A
K
N
A
M
V
-
A
-
G
E
L
N
-------
S
V
A
G
------------
G
L
G
---
H
-----
D
-
V
F
N
V
G
M
T
D
E
N
D
H
------
H
L
---------------
T
Y
I
H
L
-
G
I
M
--
A
S
-
I
L
L
-------
N
S
K
A
V
D
F
V
V
T
G
C
G
T
G
Q
G
A
L
M
S
C
N
L
H
P
G
V
V
C
G
Y
C
L
E
P
S
D
A
-----
F
L
F
N
Q
I
N
N
G
N
A
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
29.49
21%
58
- C6 -
3HDG
-
?
A:
[104-130]
------------------------------------------------------------------------------------------------------------------------------
L
F
--
L
P
-
K
P
I
-------
E
P
G
R
L
M
E
T
L
E
D
F
R
H
I
K
L
A
K
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------