@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : jhp_1072: (2015-12-20 )
MIDQLQIVPKAQVLKNNTMERSLALALQKVSIPRSTSAHRTLLINHFLEQVILQNIKTIAFRGIIKLTPHNENPLLKPYSAFITLNSIIRACAYCPL
Atome Classification :
(18 SA)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------......--...10........20........30....-.-----...40.-.--......50-...-------....----------.60........70.-----..--------...-..80..----.-.---.----.--..90......--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MID
Q
L
Q--IV
P
K
A
Q
V
L
KNN
T
M
E
R
S
L
A
L
A
L
Q
K
VSIPRS-T-----SA
H
R
T
L
-
L
--
I
N
H
F
L
E
Q
V
-
I
L
Q
-------
N
I
K
T
----------
I
A
F
R
G
I
I
K
LTPHNE-----NP--------LL
K
-
P
Y
S
A
F
I
----
T
-
L
---
N
----
S
--
I
I
R
A
CAYCPL--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
80.10
23%
-155
- C3 -
4JM1
2
?
A:
[1-84]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA
D
K
Y
I
D
T
I
T
GF
S
C
E
K
A
A
V
T
D
N
G
----
F
L
V
I
A
I
D
------
A
-
D
-----
S
D
S
G
Y
D
M
L
--
A
S
Q
F
L
E
E
A
-
K
K
E
-------
G
V
S
G
----------
L
--
K
G
V
L
I
V
D
I
K
N
-----------------
A
K
-
F
E
Q
G
A
V
----
V
-
G
---
K
----
R
--
I
G
K
A
Y
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
72.18
22%
-65
- C3 -
4NFU
3
EDS1L_ARATH
A:
[15-633]
AFEALTGIN
G
D
L
I
T
R
S
W
S
A
S
K
Q
A
Y
L
T
ER
Y
H
K
E
E
A
GA
V
V
I
F
A
F
Q
P
S
FSEKDFFDPDNKSSFG
E
I
K
L
NRVQFPCMRKIGKG
D
V
A
T
V
N
E
A
F
L
K
N
L
E
A
V
I
DPRTS
F
Q
A
S
V
E
M
A
V
R
S
RKQ
I
V
F
T
GH
S
S
G
G
A
T
A
I
L
A
T
V
W
Y
L
E
K
YFIRNPNVYL
E
P
R
C
V
T
F
GAPLVGD
S
I
F
S
H
A
L
G
R
E
KWSRF
F
V
N
F
V
T
R
F
D
--
I
V
P
R
I
T
L
A
R
K
A
S
V
E
E
T
L
P
H
V
L
A
Q
L
D
P
R
N
S
-
S
-----
V
Q
E
S
E
Q
-
R
--
I
T
E
F
Y
T
S
V
--
M
R
-------
D
T
S
T
----------
V
A
N
Q
A
V
C
E
L
T
-
G
S
A
-----
E
A
--------
I
L
E
-
T
L
S
S
F
L
----
E
-
L
---
S
----
P
--------
Y
R
P
A
G
T
F
V
F
S
T
EK
R
L
V
A
V
NN
S
D
A
I
L
Q
M
L
F
Y
T
C
QASDEQEWSL
I
P
F
R
S
I
R
D
H
H
S
Y
E
E
L
V
Q
S
M
GM
K
L
F
N
H
LDGENSI
E
S
S
L
N
D
L
GVS
T
R
G
R
Q
Y
V
Q
A
A
L
E
E
E
K
K
R
V
E
N
Q
K
K
I
I
Q
V
I
Q
Q
E
R
F
L
K
K
L
A
W
I
E
DE
Y
K
P
K
C
Q
A
H
KNG
Y
Y
D
S
F
K
V
SNE
E
N
D
F
K
A
N
V
K
R
A
E
L
A
G
V
F
D
E
V
L
G
L
L
K
K
CQLPDEFEGD
I
D
W
I
K
L
A
T
R
Y
R
R
L
V
E
P
L
D
I
A
N
Y
H
R
H
LKNEDTGPYMKRGRP
T
R
Y
I
Y
A
Q
R
G
Y
E
H
H
I
L
KPNGMI
A
E
D
V
F
W
N
K
V
N
G
L
NLGLQ
L
E
E
I
Q
E
T
L
KNSGSECGSC
F
W
A
E
V
E
E
L
KGKPYEEV
E
V
R
V
K
T
L
E
G
M
L
R
E
W
I
T
A
GEVDEKEIFLEGS
T
F
R
K
W
W
I
T
LP
K
N
H
K
S
H
SPLRDY
M
M
D
E
I
2
PsiBlast_PDB
67.82
29%
-42
- C3 -
3MZK
-
SEC16_YEAST
B:
[1200-1253]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
L
I
F
Q
V
F
V
G
N
S
-
K
-----
M
A
I
K
S
F
-
Y
--
T
N
N
E
T
S
Q
W
-
A
S
E
-------
N
W
K
S
----------
I
V
A
A
V
L
I
N
I
P
E
N
N
E
-----
D
P
--------
L
L
I
-
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
52.09
22%
-46
- C1 -
3BBD
3
NEP1_METJA
A:
[30-106]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
Y
D
I
L
D
S
N
Y
H
Y
K
A
M
E
K
L
K
D
K
E
M
R
G
R
P
-
D
-----
I
I
H
I
S
L
-
L
N
I
L
D
S
P
I
N
H
E
K
K
L
N
I
------
Y
I
H
T
----------
Y
D
-
D
K
V
L
K
I
N
P
E
T
R
-----
L
P
----------
R
-
N
Y
F
R
F
L
----
G
-
V
---
M
----
E
--
K
V
L
K
G
E
R
N
H
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
51.94
22%
-97
* C2 *
1DQI
1
SOR_PYRFU
A:
[45-113]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
E
H
H
I
R
Y
I
-
E
L
Y
-------
F
L
P
E
GEN
F
------
V
Y
Q
V
G
R
V
E
F
T
A
H
G
E
SVNGP
N
T
SD
V
-----
Y
T
E
-
P
I
A
Y
F
V
----
L
-
K
T
K
K
K
----
G
--
K
L
Y
A
L
S
Y
C
N
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
51.73
17%
0
- C3 -
3GW4
-
?
A:
[8-199]
-----------------------------------------------------------------------------------------------D
Y
A
L
A
E
R
Q
A
Q
A
L
L
A
H
PAT
A
S
G
A
R
F
M
L
G
Y
V
Y
A
F
M
DR
F
D
E
A
R
A
S
F
Q
A
L
Q
Q
Q
A
Q
K
S
GD
H
T
A
E
H
R
A
L
H
Q
V
G
M
V
E
R
M
A
GN
W
D
A
A
R
R
C
F
L
E
E
R
E
L
L
A
--
S
L
P
E
D
P
L
A
A
S
A
N
A
Y
E
V
A
T
V
A
L
H
F
G
D
--
L
A
-
G
-----
A
R
Q
E
Y
E
-
K
--
S
L
V
Y
A
Q
Q
A
-
D
D
Q
-------
V
A
I
A
----------
C
A
F
R
G
L
G
D
L
A
Q
Q
-
E
-----
K
N
--------
L
L
E
-
A
Q
Q
H
W
L
----
R
-
A
---
R
----
D
--
I
F
A
E
-----
L
ED
S
E
A
V
N
E
L
M
T
R
L
N
G
LEH--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
51.35
15%
-83
- C4 -
2IWV
21
OMPG_ECOLI
A:
[5-281]
-----------------------------------------------------------------------------------------------------------------------N
D
W
H
F
N
I
G
A
M
Y
E
I
E
N
VEGYGEDMD
G
L
A
E
P
S
V
Y
F
N
A
A
N
GP
W
R
I
A
L
A
Y
Y
Q
E
G
P
V
DYSAGKR
G
T
W
F
D
R
P
E
--
L
E
V
H
Y
Q
F
L
E
N
D
D
F
S
F
G
L
T
G
G
F
R
N
Y
G
Y
H
Y
V
-
D
-----
E
P
G
K
-----------
D
T
A
-
N
M
Q
-------
R
W
K
-----------
I
A
P
D
W
D
V
K
L
T
---
D
-----
D
L
--------
R
F
N
-
G
W
L
S
M
Y
----
K
-
F
---
A
----
N
--
D
L
N
T
T
G
Y
A
D
T
R
V
E
T
E
T
G
L
Q
Y
T
FNET
V
A
L
R
V
N
Y
Y
L
E
R
G
F
N
MDDSRNNG
E
F
S
T
Q
E
I
R
A
Y
L
P
L
T
L
GN
H
S
V
T
P
Y
T
R
I
G
L
D
R
W
S
N
WDWQDDI
E
R
E
G
H
D
F
N
R
V
G
L
F
Y
G
Y
D
FQNG
L
S
V
S
L
E
Y
A
F
E
W
Q
D
H
DEGD
S
D
K
F
H
Y
A
G
V
G
V
N
Y
S
F---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
50.15
15%
-68
* C4 *
4DAM
-
SSB1_STRCO
A:
[0-112]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SMN
E
I
M
I
C
A
V
G
--
N
V
A
T
T
P
V
F
R
D
L
A
N
G
P
S
V
R
F
R
L
A
V
T
A
R
Y
W
D
-
R
EKN
A
W
T
D
G
H
T
N
-
F
--
F
T
V
W
A
N
R
Q
-
L
A
T
-------
N
A
S
G
S
LAVG
D
P
---
V
V
V
Q
G
R
L
K
V
R
T
D
V
R
-----
E
G
---------
Q
S
-
R
T
S
A
D
I
----
D
-
A
---
V
----
A
--
I
G
H
D
L
A
R
G
T
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
45.54
20%
-106
- C2 -
3QZB
1
SOR_THEMA
A:
[61-129]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
E
H
H
I
R
W
I
-
K
V
F
-------
F
Q
P
D
GDP
Y
------
V
Y
E
V
G
R
Y
E
F
N
A
H
G
E
-----
S
V
QGPNIGA
V
Y
T
E
-
P
T
V
T
T
V
----
V
K
L
---
N
R
S
--
G
--
T
I
I
A
L
S
Y
C
N
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
38.95
25%
-57
- C3 -
3DKB
-
TNAP3_HUMAN
A:
[6003-6058]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
Q
V
-
L
P
Q
-------
A
L
Y
L
----------
S
N
M
R
K
A
V
K
I
R
E
R
T
P
-----
E
D
--------
I
F
K
-
P
T
N
G
I
I
HHFK
T
-
M
---
H
R
Y
T
L
E
--
M
F
R
T
C
Q
F
C
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
38.03
24%
21
* C3 *
1YOD
-
?
A:
[22-50]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
Q
A
R
Q
N
L
Q
N
L
Y
I
N
R
C
L
R
E
I
C
Q
E
L
K
E
I
R
A
M
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
37.93
10%
-49
- C3 -
3BPJ
-
EIF3J_HUMAN
A:
[5-46]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
D
A
M
N
--
P
S
S
R
D
D
F
T
E
F
---
G
K
L
L
K
D
K
I
T
----
Q
Y
E
-
K
-----
S
L
Y
Y
A
S
-
F
--
L
E
V
L
V
R
D
V
-
C
I
S
-------
L
E
I
D
----------
D
L
K
K
I
T
N
S
L
T
V
L
C
S
-----
E
K
--------
Q
K
Q
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
37.70
22%
-42
- C2 -
2JVM
-
?
A:
[36-60]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
A
--------
L
G
H
-
P
-
R
V
W
L
----
S
-
I
---
P
----
H
ET
G
F
V
E
C
G
Y
C
D
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
37.22
15%
-107
- C3 -
3UEM
-
PDIA1_HUMAN
A:
[220-283]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
--
I
T
E
F
C
H
R
F
-
L
E
G
-------
K
I
K
P
H
L
M
S
Q
ELPED
W
D
K
Q
P
V
K
V
L
V
G
K
N
F
-----
E
D
--------
V
A
F
D
E
K
K
N
V
F
----
V
-
E
---
F
-------
Y
A
P
W
C
G
H
C
K
Q
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
31.61
11%
-43
- C3 -
3ONR
2
DODEC_MYCTU
A:
[2-72]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
S
--
V
Y
K
V
I
D
I
I
G
T
S
P
T
S
W
E
Q
A
A
A
E
A
V
Q
R
A
R
D
S
-
V
-----
D
D
I
R
V
A
-
R
--
V
I
E
Q
D
M
A
V
-
D
S
A
-------
G
K
I
T
----------
Y
R
I
K
L
E
V
S
F
K
M
R
P
S
-----
Q
P
--------
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
29.17
11%
-5
- C3 -
2VE8
-
FTSK_PSEAE
A:
[745-811]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
D
D
P
L
Y
--
D
E
A
V
R
F
V
T
E
S
R
R
--------------
A
S
I
-
S
-----
A
V
Q
R
K
L
-
K
--
I
G
Y
N
R
A
A
R
-
M
I
E
-------
A
M
E
M
-------------
A
G
V
V
T
P
M
N
T
N
G
-----
S
R
--------
E
V
I
-
A
P
A
P
V
R
----
D
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
11.93
7%
-29
- C3 -
1B64
-
A:
[14-49]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
W
D
-
D
-----
E
T
D
M
A
K
-
L
--
E
E
C
-
V
R
S
I
-
Q
A
D
G
L
V
W
G
S
S
K
L
V
P
----------
V
G
Y
G
I
K
K
L
Q
I
Q
C
V
V
-----
E
D
--------
D
K
V
-
G
T
D
M
L
E
----
E
-
Q
---
I
----
T
--
A
F
E
D
Y
V
Q
S
M
D
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
5.11
13%
58
- C3 -
2LS4
-
A:
[1-15]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
N
G
Y
L
----
C
-
I
---
A
----
V
--
A
A
G
A
G
T
G
Y
F
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------