@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : jhp_1349: (2015-12-22 )
MKNQVKKILGMSVVAAMVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEKYSGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRSISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDKQIVDKVREELGMVKK
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------......-...-10.....--...20........30........40........50........60-.....---...70....----...-.80........90.......-.-100........110.....------..120-........130...---....140.....--------..150..-------.....---..160.....--------..170...---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------M
K
N
Q
V
K
-
K
I
L
-
G
M
S
V
V
A
A
--
M
V
I
VGCSHAPKSGISKS
N
K
A
Y
K
E
ATKGAPD
W
V
V
G
D
L
E
K
V
A
K
Y
E
KY-S
G
V
F
L---GR
A
E
D
LITN----NDV-DYSTN
Q
A
T
A
K
A
R
A
N
L
A
A
N
L
K
-
S
-
T
L
-
Q
K
D
L
ENEKT
R
T
VDASG------KRS-I-SGT
D
T
E
K
I
S
Q
L
V
D
K
---
E
L
I
A
S
K
M
L
A
R
Y
V--------GK
D
--
R
V
-------
F
V
L
VG---L
D
K
Q
I
V
D
K
V
R
--------
E
E
LGMVKK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
52
Fugue
80.19
19%
-46
* C5 *
1Q77
-
Y178_AQUAE
A:
[1-138]
-----------------------------------------------------------------------------------
S
N
A
M
K
V
L
----
L
V
L
T
--
D
A
Y
S
D
C
E
K
A
I
T
Y
A
V
N
F
S
E
K
------
L
G
A
E
L
D
I
L
A
V
L
E
D
V
Y
N
L
E
R
A
-
N
V
T
F
G
---
L
P
F
P
P
-----------------
E
I
K
E
E
S
K
K
R
I
E
R
R
L
R
-
E
-
V
W
-
E
K
L
T
G
S
T
E
I
P
G
V
E
Y
R
-------------
I
G
P
L
S
E
E
V
K
K
F
V
E
------------------------
G
K
G
Y-
E
L
-------
V
V
W
A
C
---
Y
P
S
A
Y
L
C
K
V
I
--------
D
G
L
N
L
A
S
L
I
V
K------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
54
Fugue
79.54
18%
-35
- C2 -
4RGP
6
?
A:
[2-256]
-----------------------------------------------------------------------------NAT
E
Q
E
T
L
T
-
I
L
L
D
V
Y
A
Y
Y
Q
A
--
Y
Q
I
V
K
A
S
Q
F
F
S
D
D
I
I
F
L
L
E
L
L
K
E
R
R
E
L
N
V
D
F
L
F
Q
N
Q
V
H
L
Q
E
L
E
L
T
-
Y
H
I
S
L
LDN
A
Y
E
E
E
L
L
A
N
Y
I
M
D
L
E
A
-
K
L
R
N
D
H
I
I
D
F
V
R
S
V
S
P
I
L
Y
R
L
L
M
R
L
M
Q
S
Q
V
A
D
I
N
D
Y
I
Y
D
A
K
N
DQYDTW
K
F
D
-
K
M
H
D
S
A
N
P
F
V
Q
N
F
V
A
K
GRD
S
K
I
T
S
R
S
L
A
D
F
I
Q
L
TDLP
Q
A
I
K
D
--
N
I
-------
L
L
L
R
D
---
F
E
K
S
V
R
N
P
L
A
H
LIKPFD
E
E
E
L
H
R
T
T
G
FS
S
Q
T
F
L
E
K
I
I
Q
L
A
V
F
S
G
I
H
Y
D
NDKF
Y
F
D
K
V
N
E
L
I
K
R
I
Y
Q-----------------------------------------------------------------------------------------------------------------------------------------------
53
Fugue
75.12
19%
-0
- C3 -
4D0Y
7
?
A:
[1-184]
---------------------------------------------------------------------------------
A
E
V
V
N
-
K
G
D
-
Y
Y
S
I
Q
G
K
Y
D
E
I
I
V
A
N
K
H
Y
P
L
S
---------
K
D
Y
N
P
G
E
N
P
T
A
K
A
E
L
V
K
L
I
K
A
M
Q
E
-
A
G
F
P
I
---
S
D
H
Y
S
G
F
R
S
----
Y
E
T
-
Q
T
K
L
Y
Q
D
Y
V
N
Q
D
G
K
E
A
A
D
R
Y
-
S
-
A
R
-
P
G
Y
S
E
H
Q
T
G
L
A
F
D
V
I
G
------
T
D
G
-
D
-
L
V
T
E
-
E
K
A
A
Q
W
L
L
D
---
H
A
A
D
Y
G
F
V
V
R
Y
L
K-------
G
K
E
--
K
E
TGYMAEE
W
H
L
R
Y
---
V
G
K
E
A
K
E
I
A
E
--------
S
G
L
S
L
E
E
Y
Y
G
F
E
G
G
D
YVD-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
55
Fugue
66.21
14%
-13
- C1 -
4OYF
1
?
A:
[9-416]
----------------------------------------EYPV
L
Q
K
I
L
I
G
L
I
L
G
A
I
V
G
L
I
L
G
H
Y
GY
A
H
A
V
H
T
Y
V
K
P
F
G
D
L
F
V
R
L
L
-
K
M
L
-
V
M
P
I
V
F
A
--
S
L
V
V
G
A
A
S
I
S
P
A
R
L
G
R
V
G
V
K
I
V
V
Y
Y
L
L
T
S
A
F
A
V
T
L
G
I
I
M
A
R
L
F
N
P
G
A
G
I
H
L
---
A
V
G
G
Q
L
V
H
I
----
L
L
D
-
I
V
P
T
N
P
F
G
A
L
A
N
G
Q
V
L
P
T
I
F
-
F
-
A
I
-
I
L
G
I
A
I
T
Y
L
M
N
S
E
N
E
K
------
V
R
K
-
S
-
A
E
T
L
L
D
A
I
N
G
L
A
E
A
---
M
Y
K
I
V
N
G
V
M
Q
Y
A
--------
P
I
G
--
V
F
-------
A
L
I
A
Y
---
V
M
A
E
Q
G
V
H
V
V
--------
G
E
L
A
K
V
T
A
A
V
Y
V
G
L
T
L
Q
I
L
L
V
Y
F
V
L
L
K
I
Y
GID
P
I
S
F
I
K
H
A
K
D
A
M
L
T
A
F
V
T
RSSSGT
L
P
V
T
M
R
V
A
K
E
M
GISEGIYSFT
L
P
L
G
A
T
INM
D
G
T
A
L
Y
Q
G
V
C
T
F
F
I
A
N
A
L
GSHLT
V
G
Q
Q
L
T
I
V
L
T
A
V
L
A
S
I
G
T
AGVPG
A
G
A
I
M
L
A
M
V
L
H
S
V
GLPLTD
P
N
V
A
A
A
Y
A
M
I
L
G
I
D
A
I
L
D
M
G
R
T
M
V
N
V
T
G
D
L
T
G
T
A
I
V
A
K
T
E
15
HHSearch
64.39
18%
-18
- C4 -
2WCR
-
?
A:
[4-123]
----------------------------------------------------------------------------------------------------------------------------
L
Q
D
V
P
Y
W
M
L
Q
N
R
S
E
---------
Y
I
T
Q
---
G
V
D
S
S
H
I
V
D
----
G
K
K
T
E
E
I
E
K
I
A
T
K
R
A
T
I
R
V
A
Q
N
I
V
-
H
-
K
L
-
K
E
A
Y
L
S
K
T
N
R
---
I
-
K
------
Q
K
I
-
T
-
N
E
M
F
I
Q
M
T
Q
P
-
I
Y
D
---
S
L
M
N
V
D
R
L
G
I
Y
I
--------
N
P
N
NE
E
V
-------
F
A
L
V
R
A
RG
F
D
K
D
A
L
S
E
G
L
--------
H
K
M
S
L
D
N
Q
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
57.20
25%
49
- C4 -
1DZM
1
OBP_PIG
A:
[79-153]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
V
-
N
Y
A
G
N
N
K
F
V
V
S
Y
A
S
E
T
A
L
I
I
-
S
-
N
I
-
N
V
D
E
E
G
D
K
T
I
M
T
G
L
L
G
------
K
G
T
D
I
-
E
D
Q
D
L
E
K
F
K
E
V
T
R
E
---
N
G
I
P
E
E
N
I
V
N
I
I
--------
E
R
D
--
D
C
-------
P
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
56.94
25%
47
- C4 -
1E02
1
OBP_PIG
A:
[79-153]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
V
-
N
Y
A
G
N
N
K
F
V
V
S
Y
A
S
E
T
A
L
I
I
-
S
-
N
I
-
N
V
D
E
E
G
D
K
T
I
M
T
G
L
L
G
------
K
G
T
D
I
-
E
D
Q
D
L
E
K
F
K
E
V
T
R
E
---
N
G
I
P
E
E
N
I
V
N
I
I
--------
E
R
D
--
D
C
-------
P
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
56.39
25%
46
- C4 -
1DZJ
1
OBP_PIG
A:
[79-153]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
V
-
N
Y
A
G
N
N
K
F
V
V
S
Y
A
S
E
T
A
L
I
I
-
S
-
N
I
-
N
V
D
E
E
G
D
K
T
I
M
T
G
L
L
G
------
K
G
T
D
I
-
E
D
Q
D
L
E
K
F
K
E
V
T
R
E
---
N
G
I
P
E
E
N
I
V
N
I
I
--------
E
R
D
--
D
C
-------
P
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
56.19
25%
49
- C4 -
1E00
1
OBP_PIG
A:
[79-153]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
V
-
N
Y
A
G
N
N
K
F
V
V
S
Y
A
S
E
T
A
L
I
I
-
S
-
N
I
-
N
V
D
E
E
G
D
K
T
I
M
T
G
L
L
G
------
K
G
T
D
I
-
E
D
Q
D
L
E
K
F
K
E
V
T
R
E
---
N
G
I
P
E
E
N
I
V
N
I
I
--------
E
R
D
--
D
C
-------
P
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
56.13
25%
51
- C4 -
1DZK
1
OBP_PIG
A:
[79-153]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
V
-
N
Y
A
G
N
N
K
F
V
V
S
Y
A
S
E
T
A
L
I
I
-
S
-
N
I
-
N
V
D
E
E
G
D
K
T
I
M
T
G
L
L
G
------
K
G
T
D
I
-
E
D
Q
D
L
E
K
F
K
E
V
T
R
E
---
N
G
I
P
E
E
N
I
V
N
I
I
--------
E
R
D
--
D
C
-------
P
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
55.87
25%
50
- C4 -
1HQP
1
OBP_PIG
A:
[79-153]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
V
-
N
Y
A
G
N
N
K
F
V
V
S
Y
A
S
E
T
A
L
I
I
-
S
-
N
I
-
N
V
D
E
E
G
D
K
T
I
M
T
G
L
L
G
------
K
G
T
D
I
-
E
D
Q
D
L
E
K
F
K
E
V
T
R
E
---
N
G
I
P
E
E
N
I
V
N
I
I
--------
E
R
D
--
D
C
-------
P
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
55.78
25%
50
- C4 -
1A3Y
-
OBP_PIG
B:
[79-153]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
V
-
N
Y
A
G
N
N
K
F
V
V
S
Y
A
S
E
T
A
L
I
I
-
S
-
N
I
-
N
V
D
E
E
G
D
K
T
I
M
T
G
L
L
G
------
K
G
T
D
I
-
E
D
Q
D
L
E
K
F
K
E
V
T
R
E
---
N
G
I
P
E
E
N
I
V
N
I
I
--------
E
R
D
--
D
C
-------
P
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
55.45
25%
50
- C4 -
1DZP
1
OBP_PIG
A:
[79-153]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
V
-
N
Y
A
G
N
N
K
F
V
V
S
Y
A
S
E
T
A
L
I
I
-
S
-
N
I
-
N
V
D
E
E
G
D
K
T
I
M
T
G
L
L
G
------
K
G
T
D
I
-
E
D
Q
D
L
E
K
F
K
E
V
T
R
E
---
N
G
I
P
E
E
N
I
V
N
I
I
--------
E
R
D
--
D
C
-------
P
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
48
Fugue
55.10
10%
39
- C5 -
1B7B
1
ARCC1_ENTFC
A:
[2-308]
G
K
K
M
V
V
A
L
G
G
N
A
I
L
SNDAS
A
H
A
Q
Q
Q
A
L
V
Q
T
S
A
Y
L
V
H
L
I
K
Q
GHRLI
V
S
H
G
N
G
P
Q
V
G
N
L
L
L
Q
Q
Q
A
A
DSEK
N
P
A
M
P
L
D
T
C
V
A
M
T
Q
G
S
I
G
-
Y
W
L
-
S
N
A
L
N
Q
E
--
L
N
K
A
G
I
K
K
Q
V
A
T
V
L
T
Q
V
V
V
D
P
A
D
E
A
F
K
N
P
T
K
P
I
G
P
F
L
T
E
A
E
A
K
E
A
-
M
Q
-------
A
G
A
I
F
K
E
D
----
A
G
R
-
G
W
R
K
V
V
P
S
P
K
P
I
D
I
H
E
---
A
-
E
-
T
I
-
N
T
L
I
K
N
D
I
I
T
I
S
C
G
G
G
------
G
I
P
-
V
-
V
G
Q
E
L
K
G
V
E
A
V
I
D
K
---
D
F
A
S
E
K
L
A
E
L
V
---------
D
A
D
--
A
L
-------
V
I
L
T
G
---
V
D
Y
V
C
I
N
Y
G
K
--------
P
D
E
K
Q
L
T
N
VT
V
A
E
L
E
E
Y
K
Q
A
GHFAPGS
M
L
P
K
I
E
A
A
I
Q
F
V
E
S
QPN
K
Q
A
I
I
T
S
L
E
N
L
G
S
MSGD
E
I
V
G
T
V
V---------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
54.51
25%
54
- C4 -
1E06
1
OBP_PIG
A:
[79-153]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
V
-
N
Y
A
G
N
N
K
F
V
V
S
Y
A
S
E
T
A
L
I
I
-
S
-
N
I
-
N
V
D
E
E
G
D
K
T
I
M
T
G
L
L
G
------
K
G
T
D
I
-
E
D
Q
D
L
E
K
F
K
E
V
T
R
E
---
N
G
I
P
E
E
N
I
V
N
I
I
--------
E
R
D
--
D
C
-------
P
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
56
Fugue
48.31
20%
39
- C5 -
1E68
-
?
A:
[1-70]
-------------------------------------------------------------------------------------------------------------------------
M
A
K
E
F
G
I
P
A
A
V
A
G
T
V
L
N
V
V
E
A
-----
G
G
W
V
---
T
T
I
V
S
I
L
T
A
----
V
G
------
S
G
G
L
S
L
L
A
A
A
G
R
E
S
I
K
-
A
-
Y
L
-
K
K
E
I
K
K
K
G
K
R
A
V
I
A
W
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
45.41
29%
65
- C6 -
2I80
1
DDL_STAAC
A:
[39-95]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
I
-
I
Y
I
T
N
D
G
D
W
R
K
Q
N
N
I
T
A
E
I
K
-
S
-
T
D
-
E
L
H
L
E
N
G
E
A
L
E
I
S
Q
L
L
------
K
E
S
-
S
-
S
G
Q
P
Y
D
A
V
F
P
L
L
H
G
---
P
N
G
E
D
G
T
I
Q
G
L
F
--------
E
V
L
--
D
V
-------
P
Y
V
G
N
---
G
V
L
S
A
A
S
S
M
D
--------
K
L
V
M
K
Q
L
F
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
44.56
29%
37
- C6 -
3N8D
-
DDL_STAAC
A:
[39-95]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
I
-
I
Y
I
T
N
D
G
D
W
R
K
Q
N
N
I
T
A
E
I
K
-
S
-
T
D
-
E
L
H
L
E
----
L
E
I
S
Q
L
L
------
K
E
S
-
S
-
S
G
Q
P
Y
D
A
V
F
P
L
L
N
G
---
E
D
G
T
I
Q
G
L
F
E
V
L
--------
D
V
P
--
Y
V
-------
G
N
G
V
L
---
S
A
A
S
S
M
D
K
L
V
--------
M
K
Q
L
F
E
H
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
44.14
29%
63
- C6 -
2I8C
-
DDL_STAAC
A:
[39-95]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
I
-
I
Y
I
T
N
D
G
D
W
R
K
Q
N
N
I
T
A
E
I
K
-
S
-
T
D
-
E
L
H
L
E
N
G
E
A
L
E
I
S
Q
L
L
------
K
E
S
-
S
-
S
G
Q
P
Y
D
A
V
F
P
L
L
H
G
---
P
N
G
E
D
G
T
I
Q
G
L
F
--------
E
V
L
--
D
V
-------
P
Y
V
G
N
---
G
V
L
S
A
A
S
S
M
D
--------
K
L
V
M
K
Q
L
F
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
43.29
29%
63
* C6 *
2I87
-
DDL_STAAC
A:
[39-95]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
I
-
I
Y
I
T
N
D
G
D
W
R
K
Q
N
N
I
T
A
E
I
K
-
S
-
T
D
-
E
L
H
L
E
N
G
E
A
L
E
I
S
Q
L
L
------
K
E
S
-
S
-
S
G
Q
P
Y
D
A
V
F
P
L
L
H
G
---
P
N
G
E
D
G
T
I
Q
G
L
F
--------
E
V
L
--
D
V
-------
P
Y
V
G
N
---
G
V
L
S
A
A
S
S
M
D
--------
K
L
V
M
K
Q
L
F
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------