@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo0336: (2016-03-14 )
MDSAHSQLEQQLQQIKKAKITAETDADQTRRKQNEQDWLEEDSNQLTQEKRVLLDFLRSGWQGEEASSFHRYLEEQQHEESQVWRRDLQDKRSDLDTELQENKDRLHTLEAKQATLQKEWSQ
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20...---------.....30-----------.........-40........50........60...-.....--70........80........90--------------........100.......110.......120---------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MD
S
A
H
S
Q
L
E
Q
Q
L
Q
Q
I
K
K
AK
I
T
AET---------
D
A
D
Q
T
R
------------RKQ
N
E
Q
D
W
L
-
E
E
D
S
N
Q
L
T
Q
E
K
R
V
L
L
D
F
L
RSGWQGE-
E
A
S
S
F
--
H
R
Y
L
E
E
Q
Q
H
E
E
S
Q
V
W
R
R
D
L
Q
D
K
--------------RSDL
D
T
E
L
Q
ENK
D
R
L
H
T
L
E
A
K
Q
A
T
L
Q
K
EWSQ---------------------------------------------------------------------------------------------------------------------------------------------------------
35
Fugue
72.18
20%
2
- C4 -
4V2X
10
?
A:
[54-587]
KTLD
I
Q
S
Y
V
R
D
M
Q
P
G
W
N
LGNTFDAVGQDETAWGNPRVT
R
E
L
I
E
Q
I
A
D
E
GYK
S
I
R
I
P
V
T
WENRIGGAPDYPID
P
Q
F
L
N
R
V
D
Q
V
V
Q
W
A
L
E
E
D
L
Y
V
M
I
N
LHHDSWLWIYEMEHN
Y
N
G
V
M
V
K
Y
R
S
L
W
E
Q
L
S
N
H
F
K
DYPTK
L
M
F
E
SVNEPKFSQNWGEIR
E
N
H
H
A
L
L
D
D
L
N
T
V
F
F
E
I
V
R
Q
SGGQNDIR
P
L
V
L
P
T
METATS
Q
P
L
L
N
N
L
Y
Q
T
I
D
K
L
DDP
N
L
I
A
T
V
H
Y
YGF
W
P
F
S
V
NIAGYTRFE
E
N
S
K
Q
E
I
I
E
A
F
D
R
V
H
H
T
FVARG
I
P
V
V
LGEFGLLGFDKHTGVIQ
Q
G
E
K
L
K
F
F
E
F
L
I
H
H
L
N
E
R
D
I
T
H
M
L
---------
W
D
N
G
Q
H
------------
F
N
R
H
T
Y
E
W
Y
-
D
----------
Q
E
L
F
D
M
M
R
A
S
W
E
G
R
---
S
S
V
--
A
---------
E
S
N
F
I
Y
L
K
Q
G
D
R
--------------
I
A
D
A
T
V
S
L
Q
L
H
G
N
E
L
T
G
L
R
A
N
G
Q
R
L
T
P
G
Q
D
Y
E
L
N
GE
R
L
T
V
K
A
H
V
L
S
A
I
ASSGTLGTN
G
M
V
T
A
E
F
NR
G
A
D
W
H
F
R
V
N
T
Y
R
T
P
V
L
Q
S
T
Q
G
H
VS
N
F
S
I
PASFNGNSLA
T
M
E
A
V
Y
VDGGNAGPQDWTSFKEFGYAFSPSYDAN
E
M
K
L
T
E
A
F
F
R
E
VRD
G
E
V
R
L
T
F
H
F
WSG
E
T
V
N
Y
T
I
I
K
N
GN
Q
V
T
G
I
A
A
Q
34
Fugue
55.51
21%
29
- C3 -
2OQQ
-
HY5_ARATH
A:
[1-42]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
A
Y
L
S
E
L
E
N
R
--------------
V
K
D
L
E
N
K
N
S
E
L
E
E
R
L
S
T
L
Q
N
E
N
Q
M
L
R
H
I
L
K
N
---------------------------------------------------------------------------------------------------------------------------------------------------------
36
Fugue
53.77
15%
83
- C1 -
1D7P
4
M:
[1-159]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
N
S
C
S
M
P
L
G
M
E
S
K
A
I
S
D
A
Q
I
T
A
S
S
YFTNMFATW
S
P
S
K
A
R
LHLQGRSNAWRP
Q
V
N
N
P
K
E
W
L
-
Q
V
D
F
Q
K
T
M
K
V
T
G
V
T
T
Q
G
V
K
S
L
L
T
S
M
-
Y
V
K
E
F
--
L
I
S
S
S
Q
D
G
H
Q
W
T
L
F
F
Q
N
G
--
K
V
KVF-----------
Q
G
N
Q
D
S
F
T
P
V
V
N
C
L
D
P
P
L
L
T
R
Y
L
R
I
H
P
Q
S
W
V
HQIALRMEVLGCEAQ------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
51.36
16%
85
- C4 -
2KCK
-
?
A:
[1-112]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
V
D
Q
N
P
E
-
E
Y
Y
L
E
G
V
L
Q
Y
D
A
G
N
Y
T
---------
E
S
I
D
L
F
------------
E
K
A
I
Q
L
D
---
P
E
E
S
K
Y
W
L
M
K
G
K
A
L
Y
N
L
E
R
----
Y
E
-
E
A
V
D
C
--
Y
N
Y
V
I
N
V
I
E
D
E
---
Y
N
K
D
V
W
A
A
--------------
K
A
D
A
L
R
Y
I
E
G
K
E
V
E
A
E
I
A
E
A
R
A
K
L
E
H
H
H
H
H
H
---------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
50.83
24%
40
- C5 -
1CE6
1
B2MG_HUMAN
B:
[10-70]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
Q
R
T
P
K
I
Q
V
Y
S
R
H
P
A
E
N
G
K
S
N
F
L
N
C
Y
V
SGFH
P
S
D
I
E
V
D
L
L
K
N
G
E
R
I
E
K
V
E
H
S
D
L
S
F
S
K
D
W
S
----------------------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
50.25
13%
-3
- C3 -
3ZBH
3
?
A:
[19-58]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
Q
Y
N
V
E
-
S
S
N
V
T
E
L
I
A
R
L
D
Q
M
S
H
T
L
Q
G
I
W
E
G
A
-
S
S
E
A
F
--
I
Q
Q
Y
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
40
Fugue
48.52
16%
72
* C4 *
1W53
3
RSBU_BACSU
A:
[1-84]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
D
F
R
E
V
I
E
Q
R
Y
H
Q
L
L
S
R
Y
I
A
E
L
T
---------
E
T
S
L
Y
Q
------------
A
Q
K
F
S
R
K
T
I
-
E
H
Q
I
P
------------------
P
E
-
E
I
I
S
I
--
H
R
K
V
L
K
E
L
Y
P
----------------------------
S
L
P
E
D
V
F
H
S
L
D
F
L
I
E
V
M
I
G
Y
G
M
A
Y
--------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
47.05
11%
-17
- C3 -
3FX7
-
?
A:
[33-79]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
N
H
F
H
N
L
-
E
S
W
R
D
A
-
R
R
D
K
F
--
S
E
V
--------
L
D
N
L
K
S
T
F
N
E
F
--------------
D
E
A
A
Q
E
Q
I
A
W
L
K
E
R
I
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
45.50
37%
30
- C3 -
1Z3S
-
ANGP2_HUMAN
A:
[75-117]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
L
G
N
E
F
V
S
Q
L
T
N
Q
Q
R
Y
V
L
K
I
H
L
K
D
W
E
G
N
-
E
A
Y
S
L
Y
E
H
F
Y
L
S
S
E
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
44.59
10%
2
- C3 -
3GWK
-
?
C:
[17-58]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
Q
K
Y
T
A
G
-
S
Q
Q
V
T
E
V
L
N
L
L
T
Q
E
Q
A
V
I
D
E
N
W
D
G
S
-
T
F
D
S
F
--
E
A
Q
F
N
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
HHSearch
44.47
16%
-15
- C3 -
3H6P
-
ESXR_MYCTU
C:
[20-57]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
Y
-
A
G
T
L
Q
S
L
G
A
D
I
A
S
E
Q
A
V
L
S
S
A
W
Q
G
D
-
T
G
I
T
Y
--
Q
G
W
Q
T
Q
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
44.21
37%
36
- C3 -
4ZFG
-
A:
[81-123]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
L
G
N
E
F
V
S
Q
L
T
N
Q
Q
R
Y
V
L
K
I
H
L
K
D
W
E
G
N
-
E
A
Y
S
L
Y
E
H
F
Y
L
S
S
E
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
44.17
37%
38
- C3 -
4JZC
-
A:
[76-118]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
L
G
N
E
F
V
S
Q
L
T
N
Q
Q
R
Y
V
L
K
I
H
L
K
D
W
E
G
N
-
E
A
Y
S
L
Y
E
H
F
Y
L
S
S
E
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
43.69
40%
42
- C3 -
4JVY
1
GLD1_CAEEL
A:
[146-175]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
H
I
K
L
Q
A
A
L
E
Q
V
K
K
L
L
I
P
A
P
E
---------
G
T
D
E
L
K
------------
R
K
Q
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
42.87
37%
32
- C3 -
1Z3U
-
ANGP2_HUMAN
A:
[75-117]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
L
G
N
E
F
V
S
Q
L
T
N
Q
Q
R
Y
V
L
K
I
H
L
K
D
W
E
G
N
-
E
A
Y
S
L
Y
E
H
F
Y
L
S
S
E
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
41
Fugue
42.44
10%
37
- C2 -
1TUZ
-
DGKA_HUMAN
A:
[1-118]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
A
K
E
R
G
L
I
----
S
P
S
D
F
A
Q
L
Q
K
Y
M
---------
E
Y
S
T
K
K
------------
V
S
D
V
L
K
L
F
E
-
D
G
E
M
A
K
Y
V
Q
G
D
A
I
G
Y
E
G
F
Q
Q
F
L
K
I
Y
L
E
V
D
N
V
--
P
R
H
L
S
L
A
L
F
Q
S
F
E
T
G
H
C
L
N
E
T
N
--------------
V
T
K
D
V
V
C
L
N
D
V
S
C
Y
F
S
L
L
E
G
G
R
P
E
D
K
L
E
W
S
----------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
41.34
37%
32
- C3 -
2GY7
-
A:
[75-117]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
L
G
N
E
F
V
S
Q
L
T
N
Q
Q
R
Y
V
L
K
I
H
L
K
D
W
E
G
N
-
E
A
Y
S
L
Y
E
H
F
Y
L
S
S
E
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
HHSearch
40.98
15%
64
- C3 -
3VP9
3
TUP1_YEAST
A:
[38-71]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
K
D
Y
D
F
K
--------------
M
N
Q
Q
L
A
E
M
Q
Q
I
R
N
T
V
Y
E
R
E
L
T
H
R
K
M
K
D
-------------------------------------------------------------------------------------------------------------------------------------------------------------
30
HHSearch
40.97
16%
-25
- C3 -
2VS0
2
ESXA_STAAM
A:
[35-71]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
Q
G
E
I
A
A
N
W
E
G
Q
-
A
F
S
R
F
--
E
E
Q
F
--------
Q
Q
L
S
P
K
V
E
K
F
--------------
A
Q
L
L
E
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
40.35
31%
63
* C5 *
2P5E
1
B2MG_HUMAN
B:
[34-62]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
D
I
E
V
D
L
L
K
N
G
E
R
I
E
K
V
E
H
S
D
L
S
F
S
K
D
W
S
----------------------------------------------------------------------------------------------------------------------------------------------------------