@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : gbs0255: (2015-11-29 )
MKIDKKEFLALIASIILLIFASVTFFLFKDHGTTQMDTVESSVNHVSDSQLTEAQDMLDKFEKKPSEKLLKDVELALNKLSNSSKKEALQKRFKKAKDKYLKDEADKKATKDATDLVEILEQAPSEENVLKAEAAVNKLTVKESKEALQKRIDTVKTQYGLIGNQTPSSSVAETTEQGTANPASQDTSSYVNQNVAPTYEQPQTNNTPVTPGVNNTVPTPGTGTAPATNGTGVAQ
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------.........10........---20.--..----..-...30........40.------...--.--...50........60...-------..----...70........80--.--.--.......90-.------.......100..---.--....110..-------.-...-.120....----...130-----.-----......--.140.--......150.........160------...------......170........180.......190...-----------....200.......210.......220.......230...-----------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------MKI
D
K
K
E
F
L
A
L
I
A
S
I
I
L
L
I
---
F
A
S
--
V
T
----
F
F
-
L
FKDHGTT
Q
M
D
T
V
E
S
S
------VNH--V--SD
S
Q
L
T
E
A
Q
D
M
L
D
K
F
EKK-------
P
S
----
E
K
L
L
K
D
V
E
L
A
L
N
KL---S--N--S
S
K
K
E
A
L
Q
K
-
R
------
F
K
K
A
K
D
K
Y
L
K
D
E
---A--DKKATK
D
A
T
-------
D
-
L
V
E
-
I
L
E
QAPSE----ENV
L
K
------
A
-----
E
A
AV
N
K
--
L
T
V
K
E
--
S
K
E
A
L
Q
K
--
R
I
D
T
V
K
T
Q
YG--------LIG------NQTPS
S
S
V
-
A
E
T
TEQGTANPASQ
D
T
S
S
Y
VNQNV-----------APTYEQPQTNNTPVTPGVNNTVPTPGTGTAPATNGTGVAQ-----------------------------------------------------------------------------------------
13
HHSearch
64.77
24%
-9
- C4 -
2WY7
-
?
Q:
[22-75]
-------------------------------------------------------------------------------------------------------------------------------------------------------
D
E
R
V
K
S
A
N
D
A
I
S
K
L
N
E
K
-------
D
S
----
I
E
N
R
R
L
A
Q
R
E
V
N
K
A
---
P
--
M
---
D
V
K
E
H
L
Q
K
-
Q
------
L
D
A
L
V
A
Q
K
D
A
E
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
63.97
18%
7
- C2 -
4N9N
-
ENLYS_BPT4 (first)
A:
[11-438]
NLN
L
I
D
M
K
L
F
H
H
Y
C
T
KV
W
P
T
I
T
A
A
KVSG
P
E
I
W
R
D
Y
I
P
E
L
A
F
D
Y
P
F
L
M
H
A
L
L
A
F
S
A
T
H
L
S
RTETGL
E
Q
Y
V
S
S
H
R
L
D
A
L
R
L
L
R
E
A
V
L
E
I
S
E
N
N
T
D
A
L
V
A
S
A
L
I
L
I
M
D
S
L
A
N
--
A
S
VD
N
I
F
E
M
L
R
I
D
E
G
L
R
L
K
I
Y
K
D
T
E
GYYTIG
I
G
H
--
L
LT
K
S
P
S
L
N
A
A
K
S
E
L
D
K
A
I
G
R
-------
N
T
----
N
G
V
I
T
--
K
D
E
A
E
K
L
---
F
--
N
--
Q
D
V
D
A
A
V
R
G
-
I
------
L
R
N
A
K
L
K
P
V
Y
D
S
---
L
--
D
A
V
R
R
A
A
L
I
-------
N
M
V
F
Q
M
G
E
T
G
V
A
G
F
----
T
N
S
L
R
M
L
Q
Q
KR
W
-----
D
E
A
A
V
N
--
L
A
K
S
R
--
W
Y
N
Q
T
P
N
--
R
A
K
R
V
I
T
T
F
R
--------
T
-
G
------
T
W
D
A
Y
V
D
S
M
S
P
S
A
W
I
F
H
V
K
G
A
A
T
I
L
T
A
V
W
P
L
S
E
-----------
R
S
K
F
H
N
I
I
S
V
D
L
S
D
L
G
D
V
I
N
--
P
D
V
G
T
I
T
E
L
V
C
F
D
E
S
I
A
D
LYPVGLDSPYL
I
T
L
A
Y
L
D
K
L
H
R
EKN
Q
G
D
F
I
L
R
V
F
T
FPALLD
K
T
F
L
A
L
L
M
T
GD
L
G
A
M
R
I
M
R
S
Y
Y
K
L
L
R
G
F
A
T
E
VKDKVWFLEGVTQVLPQ
23
Fugue
63.62
33%
-9
- C4 -
2GOM
-
FIB_STAAM
A:
[105-165]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
---
K
--
K
E
Q
K
L
I
Q
A
Q
-------
N
-
L
V
R
-
E
F
E
K
T
H
T
V
----
S
A
H
R
K
------
A
-----
Q
K
A
V
N
L
VS
F
E
Y
K
V
--
K
K
M
V
L
Q
E
--
R
I
D
N
V
L
K
Q
-
G
--------
L
V
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
61.88
18%
-3
- C4 -
2NOJ
-
?
B:
[52-103]
-------------------------------------------------------------------------------------------------------------------------------------------------------
N
K
K
V
V
D
A
Q
K
A
V
E
L
F
K
R
T
-------
R
T
----
V
A
T
H
R
K
A
Q
R
A
V
N
L
I
---
H
FQ
H
--
S
Y
E
K
K
K
L
Q
R
-
Q
------
I
D
L
V
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
61.61
15%
16
- C1 -
3WQL
2
TUBOL_MYCTU
A:
[2-294]
------------------------------------------------------------------------------------
N
L
V
S
E
K
E
F
L
D
L
P
L
V
S
V
A
E
I
---
V
R
C
RG
P
K
----
V
S
-
V
F
P
F
D
G
T
R
R
W
F
H
L
E
C
N
------
P
Q
Y
DD
Y
--
Q
Q
A
A
L
R
Q
S
I
R
I
L
K
M
L
F
E
H
GIE
T
V
I
S
P
I
----
F
S
I
V
Q
A
L
E
G
M
A
L
L
A
---
N
--
D
--
E
E
I
L
S
F
Y
K
E
-
H
E
V
H
V
L
F
Y
G
D
Y
K
K
R
L
P
S
T
A
---
Q
--
G
A
A
V
V
K
S
F
D
-------
D
-
L
T
I
-
S
T
S
S
N
T
E
H
----
R
L
C
F
G
------
V
FGNDA
A
E
S
V
A
Q
--
F
S
I
S
W
--
N
E
T
H
G
K
P
P
T
R
R
E
I
I
E
G
Y
Y
G
EYVDKAD
M
F
I
G
F
G
RFST
F
D
F
P
L
L
S
S
-
G
K
T
S
L
Y
F
T
V
A
P
S
Y
Y
M
T
E
T
T
L
R
R
I
L
Y
D
H
I
YLRHFRP
K
P
D
Y
S
A
M
S
A
D
Q
L
N
V
L
R
N
R
Y
R
A
Q
P
D
R
V
F
G
V
G
C
V
H
D
G
I
W
F
A
------------------------------------------------------------------------------------------
12
HHSearch
61.42
35%
-9
- C4 -
2WY7
-
?
Q:
[27-75]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
A
N
-------
D
-
A
I
S
-
K
L
N
E
K
D
S
I
----
E
N
R
R
L
------
A
-----
Q
R
E
V
N
K
--
A
P
M
-
D
--
V
K
E
H
L
Q
K
--
Q
L
D
A
L
V
A
Q
K
D
--------
A
E
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
60.32
29%
-9
- C4 -
2GOM
-
FIB_STAAM
A:
[109-159]
--------------------------------------------------------------------------------------------------------------------------------------------------------
Q
K
L
I
Q
A
Q
N
L
V
R
E
F
E
K
T
-------
H
T
----
V
S
A
H
R
K
A
Q
K
A
V
N
L
V
---
S
--
F
EY
K
V
K
K
M
V
L
Q
E
-
R
------
I
D
N
V
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
59.99
31%
-16
- C4 -
2NOJ
-
?
B:
[55-104]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
V
D
A
Q
-------
K
-
A
V
E
-
L
F
K
R
T
R
T
V
----
A
T
H
R
K
------
A
-----
Q
R
A
V
N
L
--
I
H
F
Q
H
S
Y
E
K
K
K
L
Q
R
--
Q
I
D
L
V
L
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
59.92
28%
54
- C4 -
2A4A
-
?
A:
[87-185]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
K
V
L
N
D
T
E
K
A
L
D
--------
D
--
G
A
D
E
I
D
L
V
I
-
N
------
Y
K
K
I
I
E
N
--
T
D
E
---
G
--
L
K
E
A
T
K
L
T
Q
-------
S
-
V
K
K
-
L
L
T
N
K
I
L
K
----
V
I
I
E
V
------
G
-----
E
L
K
T
E
D
--
L
I
I
K
T
--
T
L
A
V
L
N
G
--
N
A
D
F
I
K
T
S
T
G
--------
K
V
Q
I-----
N
A
T
P
S
S
V
E
-
Y
I
I
K
A
I
K
E
Y
I
K
N
N
P
E
K
N
N
K
I
G
L
K
V
-----------
S
G
G
I
S
D
L
N
T
A
S
H
Y
I
L
L
A
R
R
F
L
S
D
N
F
R
I
G
S
S
S
L
V
I
K
L
R
K
V
I
-----------------------------------------------------------------------------------------
8
HHSearch
56.22
34%
-13
- C4 -
2GOM
-
FIB_STAAM
A:
[112-160]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
Q
A
Q
-------
N
-
L
V
R
-
E
F
E
K
T
H
T
V
----
S
A
H
R
K
------
A
-----
Q
K
A
V
N
L
--
V
S
F
E
Y
K
V
K
K
M
V
L
Q
E
--
R
I
D
N
V
L
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
53.40
16%
-12
- C4 -
1ZV1
-
DSX_DROME
A:
[6-64]
------------------------------------------------------------------------------------------------------------------------------------------------------
Q
D
V
F
L
D
Y
C
Q
K
L
L
E
K
F
--
R
-------
Y
P
----
W
E
L
M
P
L
M
Y
V
I
L
K
D
A
---
D
--
A
--
N
--
I
E
E
A
S
R
-
R
------
I
E
E
G
Q
Y
V
V
N
E
Y
S
---
R
--
Q
H
N
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
53.21
26%
21
- C4 -
3GOD
1
CAS1_PSEAB
A:
[113-212]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
Y
R
-------
P
T
----
E
Y
L
Q
R
W
V
G
F
W
F
D
E
E
---
K
--
R
--
L
V
A
A
R
H
F
Q
R
A
R
------
L
E
R
I
R
H
S
W
L
E
D
R
---
V
L
R
D
A
G
F
A
V
D
A
T
A
L
A
V
A
V
E
D
-
S
A
R
-
A
L
E
Q
A
P
N
H
----
E
H
L
L
T
------
E
-----
E
A
R
L
S
K
--
R
L
F
K
L
--
A
A
Q
A
-----------
T
R
Y
G
--------
E
F
V
------
R
A
K
R
G
S
G
G
-
D
P
A
N
R
F
L
D
H
G
N
Y
L
A
Y
G
L
A
A
T
A
T
W
V
-----------
L
G
I
P
H
G
L
A
V
L
H
G
K
T
R
R
G
G
L
V
F
D
V
A
D
L
I
K
D
S
L
I
L
P
Q
A
F
L
S
A
-----------------------------------------------------------------------------------------
24
Fugue
50.18
18%
38
- C4 -
1YOZ
-
Y941_ARCFU
A:
[9-124]
----------------------------------------------------------------------------------------------------------------
G
----
H
M
-
L
Y
I
N
S
F
L
D
R
M
G
E
I
I
R
G
---------------
E
K
S
V
E
E
A
D
K
L
L
D
--
Q
K
N
-------
I
F
----
E
M
F
R
S
D
C
E
E
I
L
N
L
Y
K
--
S
--
G
--
K
A
E
K
E
E
V
Q
R
-
N
------
F
Y
L
L
K
-
T
Y
V
V
S
Q
---
L
--
S
I
H
F
E
R
L
K
E
-------
F
-
A
E
S
-
K
G
E
K
K
L
D
P
----
E
V
I
N
E
------
I
-----
A
L
Y
I
D
R
--
V
E
K
E
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
48.18
16%
39
- C3 -
1BOU
-
PCYA_SPHPI
A:
[8-139]
-----------------------------------------------------------------------------------------------------------------------------------------------------------
I
D
V
H
A
Y
L
A
E
F
D
D
I
-------
P
G
TRVF
T
A
Q
R
A
R
K
G
Y
N
L
N
Q
F
---
A
--
M
--
S
L
M
K
A
E
N
R
E
-
R
------
F
K
A
D
E
S
A
Y
L
D
E
W
NLT
P
--
A
A
K
A
A
V
L
A
R
-------
D
-
Y
N
A
-
M
I
D
E
G
G
N
V
----
Y
F
L
S
K
------
L
------
F
S
T
D
G
--
K
S
F
Q
F
--
A
A
G
S
M
T
G
--
M
T
Q
E
E
Y
A
Q
M
M
--------
I
D
G
------
G
R
S
P
A
G
V
R
-
S
I
K
G
G
Y
--------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
46.74
18%
53
- C4 -
2F8X
-
MAML1_HUMAN
M:
[5-59]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
--
S
A
V
M
E
R
L
R
R
-
R
------
I
E
L
C
R
R
H
H
S
T
C
E
---
A
--
R
Y
E
A
V
S
P
E
R
-------
L
-
E
L
E
-
R
Q
H
T
F
A
L
H
----
Q
R
C
I
Q
------
A
-----
K
A
K
R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
44.28
26%
40
- C- -
1US7
-
CDC37_HUMAN
B:
[293-348]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
-
P
V
E
-
V
Y
E
S
L
P
E
E
LQKC----
M
------
L
-----
Q
D
A
I
S
K
--
M
D
P
T
D
--
A
K
Y
H
M
Q
R
--
C
I
D
S
-----
G
--------
L
W
V
------
P
N
S
K
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
41.62
14%
22
- C4 -
2WT7
3
B:
[1-90]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
Q
L
V
S
M
S
V
R
E
L
N
R
H
L
RG
F
--
T
--
K
D
E
V
I
R
L
K
Q
-
K
------
R
R
T
L
K
N
R
G
Y
A
Q
S
---
C
--
R
Y
K
R
V
Q
Q
K
H
-------
H
-
L
E
N
-
E
K
T
Q
L
I
Q
Q
----
V
E
Q
L
K
------
Q
-----
E
V
S
R
L
A
--
R
E
R
D
A
--
Y
K
V
K
S
E
K
--
L
A
N
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
41.15
29%
86
- C4 -
1OGC
-
RBSD_BACSU
A:
[60-127]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
E
M
-------
A
V
----
E
K
V
I
A
A
A
E
I
---
K
A
---
S
--
N
--
Q
E
N
A
K
F
L
E
N
-
L
------
F
S
E
Q
E
I
E
Y
L
S
H
E
---
E
--
F
K
L
L
T
K
D
A
K
-------
A
-
V
I
R
-
T
G
E
F
T
P
Y
A
----
N
C
I
L
Q
------
A
-----
G
V
L
F
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
41.05
29%
91
- C4 -
1OGF
1
RBSD_BACSU
A:
[60-127]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
E
M
-------
A
V
----
E
K
V
I
A
A
A
E
I
---
K
A
---
S
--
N
--
Q
E
N
A
K
F
L
E
N
-
L
------
F
S
E
Q
E
I
E
Y
L
S
H
E
---
E
--
F
K
L
L
T
K
D
A
K
-------
A
-
V
I
R
-
T
G
E
F
T
P
Y
A
----
N
C
I
L
Q
------
A
-----
G
V
L
F
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
39.95
29%
94
- C4 -
1OGD
1
RBSD_BACSU
A:
[60-127]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
E
M
-------
A
V
----
E
K
V
I
A
A
A
E
I
---
K
A
---
S
--
N
--
Q
E
N
A
K
F
L
E
N
-
L
------
F
S
E
Q
E
I
E
Y
L
S
H
E
---
E
--
F
K
L
L
T
K
D
A
K
-------
A
-
V
I
R
-
T
G
E
F
T
P
Y
A
----
N
C
I
L
Q
------
A
-----
G
V
L
F
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------