@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : gbs1413: (2015-12-07 )
MEVIREQEFVNQYHYDARNLEWEEENGTPKTNFEVTFQLANRDEAAKVTSIVAVLQFVIVRDEFVISGVISQMAHIQGRLINEPSEFSQDEVENLAAPLLEIVKRLTYEVTEIALDRPGVTLEFNS
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------.........-10........20..--......30...-----....-.40.........-------50.-----..-....-.60...----.....70........80.....--------...90-.....--.-...100.....--------------..-110.......120....-------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------ME
V
I
R
E
Q
E
F
-
V
N
Q
Y
HYDARN
L
E
WE--EENGTPKT
N
F
E
-----
V
T
F
Q
-LA-NR
D
E
A
A
K
V
T
-------
S
I
V
-----
A
V
-
L
Q
F
V
-
I
VR
D
E
F
----
V
I
S
G
V
I
S
Q
M
A
H
I
Q
G
R
LINE
P
S
E--------F
S
Q
D
--
E
V
E
N
L
--
A
-
A
P
L
L
E
I
V
K
R
L
T
--------------
Y
E
-
V
T
E
IALDRP
G
V
T
L
E
FNS-------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
87.91
99%
-67
* C3 *
2O2A
-
?
A:
[2-124]
-------------------------------------------------------------------------------------------------------------------------------------
E
V
I
R
E
Q
E
F
-
V
N
Q
Y
H
Y
D
A
R
N
L
E
W
E
--
E
E
N
G
T
P
K
T
N
F
E
-----
V
T
F
Q
-
L
A
-
N
R
D
E
A
A
K
V
T
-------
S
I
V
-----
A
V
-
L
Q
F
V
-
I
V
R
D
E
F
----
V
I
S
G
V
I
S
Q
M
A
H
I
Q
G
R
L
I
N
E
P
S
E
--------
F
S
Q
D
--
E
V
E
N
L
--
A
-
A
P
L
L
E
I
V
K
R
L
T
--------------
Y
E
-
V
T
E
I
A
L
D
R
P
G
V
T
L
E
F
---------------------------------------------------------------------------------------------------
19
HHSearch
70.78
100%
-17
- C3 -
2O2A
-
?
A:
[1-124]
------------------------------------------------------------------------------------------------------------------------------------
M
E
V
I
R
E
Q
E
F
-
V
N
Q
Y
H
Y
D
A
R
N
L
E
W
E
--
E
E
N
G
T
P
K
T
N
F
E
-----
V
T
F
Q
-
L
A
-
N
R
D
E
A
A
K
V
T
-------
S
I
V
-----
A
V
-
L
Q
F
V
-
I
V
R
D
E
F
----
V
I
S
G
V
I
S
Q
M
A
H
I
Q
G
R
L
I
N
E
P
S
E
--------
F
S
Q
D
--
E
V
E
N
L
--
A
-
A
P
L
L
E
I
V
K
R
L
T
--------------
Y
E
-
V
T
E
I
A
L
D
R
P
G
V
T
L
E
F
---------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
64.22
63%
-34
- C3 -
2HNG
-
?
A:
[9-128]
----------------------------------------------------------------------------------------------------------------------------------------
R
E
Q
E
F
-
V
S
Q
Y
H
F
D
A
R
N
F
E
W
E
--
N
E
N
G
A
P
E
T
K
V
D
-----
V
N
F
Q
-
L
L
-
Q
H
D
Q
E
N
Q
V
T
-------
S
L
I
-----
V
I
-
L
S
F
--
I
V
F
D
K
F
----
V
I
S
G
T
I
S
Q
V
N
H
I
D
G
R
I
V
N
E
P
S
E
--------
L
N
Q
E
--
E
V
E
T
L
--
A
-
R
P
C
L
N
-
L
N
R
L
T
--------------
Y
E
-
V
T
E
I
A
L
D
L
P
G
I
N
L
E
F
---------------------------------------------------------------------------------------------------
29
Fugue
57.71
60%
-2
- C3 -
2HNG
-
?
A:
[4-128]
------------------------------------------------------------------------------------------------------------------------------------
A
N
L
K
R
E
Q
E
F
-
V
S
Q
Y
H
F
D
A
R
N
F
E
W
E
--
N
E
N
G
A
P
E
T
K
V
D
-----
V
N
F
Q
-
L
L
-
Q
H
D
Q
E
N
Q
V
T
-------
S
L
I
-----
V
I
-
L
S
F
I
-
V
-
F
D
K
F
----
V
I
S
G
T
I
S
Q
V
N
H
I
D
G
R
I
V
N
E
P
S
E
--------
L
N
Q
E
--
E
V
E
T
L
--
A
-
R
P
C
L
N
L
-
N
R
L
T
--------------
Y
E
-
V
T
E
I
A
L
D
L
P
G
I
N
L
E
F
---------------------------------------------------------------------------------------------------
32
Fugue
52.50
16%
-28
- C4 -
2VKC
-
N4BP2_HUMAN
A:
[1666-1770]
----------------------------------------------------------------------------------------------------------------------------------------------
M
K
E
A
N
H
L
A
A
I
E
I
F
E
--
K
V
N
A
S
L
L
P
Q
N
V
-----
L
D
L
H
-
G
L
-
H
V
D
E
A
L
E
H
L
-------
M
R
V
-----
L
E
-
K
K
T
E
-
E
F
K
Q
--------
N
G
G
K
P
Y
L
S
V
I
T
G
R
G
N
H
-------------
S
Q
G
--
G
V
A
R
I
--
K
-
P
A
V
I
K
Y
L
I
S
H
S
--------------
F
R
-
F
S
E
---
I
K
P
G
C
L
K
V
M
L
K
-------------------------------------------------------------------------------------------------
34
Fugue
50.91
18%
-45
- C4 -
2CZR
3
?
A:
[1-226]
-------------------------------------------------------------------------------------------------------------------GL
V
P
R
G
S
H
M
Y
A
E
LS
P
G
T
K
K
V
Y
T
Q
V
R
Y
-
L
D
D
Y
H
W
E
I
E
G
S
T
I
T
--
G
I
H
--
K
K
S
N
V
K
-----
V
V
I
D
-
V
A
K
N
R
E
E
A
D
S
L
A
-------
G
K
D
-----
V
N
G
I
H
I
V
-
A
I
P
D
N
------------------
G
V
F
Y
I
K
N
G
S
--------
F
V
L
T
---
Y
R
Y
L
--
K
-
A
T
L
A
D
I
N
D
H
I
V
--------------
W
S
G
F
K
V
V
E
D
N
G
K
L
V
Q
E
D
V
Y
E
Y
L
G
A
A
L
V
N
H
I
K
N
NALAGQD
Y
I
F
W
Q
F
Y
KCEECG
K
Y
V
D
IEN
L
E
A
H
L
R
E
H
GIKLHEKS
E
E
H
Y
E
V
F
E
LNFREG
K
V
F
D
KFG
G
E
V
P
MDKFS
S
E
A
R
E
F
I
K
E
V
L
S
16
PsiBlast_PDB
50.40
23%
-73
- C3 -
3ERV
1
?
A:
[42-133]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
-
L
P
-
E
L
D
R
G
C
E
V
T
-------
S
L
A
-----
M
M
-
L
Q
Y
A
G
I
T
V
D
K
M
----
K
L
A
N
E
I
K
K
V
D
F
M
N
D
G
V
R
G
N
P
N
E
GFVGNIYT
F
S
E
S
--
G
Y
G
V
Y
--
H
-
G
P
L
F
Q
L
A
K
K
Y
------------------
L
P
N
K
A
V
D
L
T
G
K
S
I
E
E
L
Y
-------------------------------------------------------------------------------------------------
37
Fugue
49.81
9%
-70
- C4 -
3D7J
4
?
A:
[19-152]
---------------------------------------------------------------------------------------------------------------------------------S
H
M
F
S
I
T
V
R
D
H
I
M
I
A
H
S
F
R
G
D
V
F
---
G
--
P
A
Q
R
L
H
G
A
T
F
L
-----
V
D
A
T
-
F
R
-
R
E
Q
L
D
E
D
----------------------
N
I
-
V
V
D
I
G
L
----
A
T
Q
E
L
G
A
V
V
G
A
L
N
Y
R
N
L
D
N
E
P
D
--------
F
A
G
V
NT
S
T
E
F
L
--
A
-
K
V
I
A
D
R
L
A
E
R
V
H
K
GALGEGARGLA
G
L
T
-
V
T
L
H
E
S
H
V
A
W
A
S
Y
E
R
A
L
-------------------------------------------------------------------------------------------------
31
Fugue
48.60
20%
-29
- C1 -
4LK4
-
?
A:
[10-350]
RIINGSNANSAEWPS
I
V
A
L
V
K
R
GADAYQGQF
C
G
G
S
F
LGGR
Y
V
L
T
A
AHCFDSRSAAS
V
D
V
I
I
GAYDLNNSS
Q
G
E
R
I
A
A
Q
K
I
Y
R
HLSYSPSNLLND
I
A
I
V
E
L
AQTSS
L
P
A
I
T
L
A
G
PATRTSLPALT
P
L
T
V
A
G
WG
I
T
F
T
P
I
L
Q
E
-
V
D
V
D
L
V
S
Q
S
L
C
Q
I
V
--
M
Q
H
G
I
S
S
D
P
N
S
-----
T
N
F
C
-
A
A
-
R
L
T
Q
G
D
A
G
G
-------
P
I
V
VKTGR
E
Q
-
L
G
I
V
-
S
W
G
D
E
Q
----
G
T
Y
G
V
Y
T
N
V
S
Y
F
R
D
W
I
T
K
H
T
N
Q
--------
L
S
Y
D
--
Q
V
A
N
L
--
G
I
R
P
L
G
K
V
S
Q
S
F
T
--------------
Y
T
-
N
----
L
D
A
N
A
L
T
Y
T
G
N
T
FSSLPADFSVLSD
G
C
S
T
K
VTLATG
E
S
C
S
V
E
V
A
V
DAQ
H
Y
R
Q
Y
Q
Y
D
F
E
L
I
F
S
Y
AG
G
S
K
R
A
T
S
R
I
Q
L
D
T-------------------------------
35
Fugue
42.56
22%
-69
- C3 -
1KVE
-
?
?:
[19-81]
------------------------------------------------------------------------------------------------------------------------------------------------------
W
S
L
R
W
R
--
M
Q
K
S
T
T
I
A
A
I
A
G
C
S
GA
A
T
F
G
G
L
A
-
G
G
I
V
G
C
I
A
A
-------
G
I
L
-----
A
I
-
L
Q
G
F
-
E
V
N
W
H
N
G
G
G
G
D
R
S
N
P
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
41.36
27%
4
* C4 *
1QYS
-
?
A:
[3-94]
----------------------------------------------------------------------------------------------------------------------------------------
D
I
Q
V
Q
-
V
N
I
D
-------------
D
N
G
K
---
N
F
D
-----
Y
T
Y
T
-
V
T
-
T
E
S
E
L
Q
K
V
L
-------
N
E
L
M
----
D
-------
Y
I
K
K
Q
G
----
A
K
R
V
R
I
S
I
T
A
R
--------------------
T
K
K
--
E
A
E
K
F
--
A
-
A
I
L
I
K
V
F
A
E
L
G
--------------
Y
N
-
D
I
N
V
T
F
D
G
D
T
V
T
V
E
G
Q
L
-------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
40.12
26%
-32
- C3 -
1SH0
-
?
A:
[227-302]
--------------------------------------------------------------------------------------------------------------------------------------
I
I
F
E
R
H
S
-
R
Y
R
Y
H
Y
D
A
D
Y
S
R
W
D
ST
Q
Q
R
A
V
L
A
A
A
L
E
-----
I
M
V
K
-
F
S
-
S
E
P
H
L
A
Q
V
V
A
E
D
L
L
SP
S
V
V
-----
D
V
-
G
D
F
T
-
I
S
I
N
E
G
----
L
P
S
G
V
P
C
T
S
Q
W
N
S
I
A
H
W
L
L
T
L
C
--------
A
L
S
E
--
V
T
N
L
S
--
P
-
D
I
I
Q
A
N
S
L
F
S
F
--------------
Y
G
-
D
D
E
I
V
S
T
D
I
K
L
D
P
E
K
L
T
-------------------------------------------------------------------------------------------------
17
PsiBlast_PDB
38.97
37%
-6
- C3 -
4RH7
-
DYHC2_HUMAN
A:
[3151-3192]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
----
I
S
S
Q
V
I
S
Q
L
-
R
I
L
G
R
S
I
T
A
G
S
K
--------
F
D
R
E
--
I
W
S
N
E
--
L
-
S
P
V
L
N
L
W
K
K
L
------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
38.79
26%
-30
- C3 -
3BSN
5
?
A:
[227-302]
--------------------------------------------------------------------------------------------------------------------------------------
I
I
F
E
R
H
S
-
R
Y
R
Y
H
Y
D
A
D
Y
S
R
W
D
ST
Q
Q
R
A
V
L
A
A
A
L
E
-----
I
M
V
K
-
F
S
-
S
E
P
H
L
A
Q
V
V
A
E
D
L
L
SP
S
V
V
-----
D
V
-
G
D
F
T
-
I
S
I
N
E
G
----
L
P
S
G
V
P
C
T
S
Q
W
N
S
I
A
H
W
L
L
T
L
C
--------
A
L
S
E
--
V
T
N
L
S
--
P
-
D
I
I
Q
A
N
S
L
F
S
F
--------------
Y
G
-
D
D
E
I
V
S
T
D
I
K
L
D
P
E
K
L
T
-------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
38.76
26%
-35
- C3 -
3H5X
5
?
A:
[227-302]
--------------------------------------------------------------------------------------------------------------------------------------
I
I
F
E
R
H
S
-
R
Y
R
Y
H
Y
D
A
D
Y
S
R
W
D
ST
Q
Q
R
A
V
L
A
A
A
L
E
-----
I
M
V
K
-
F
S
-
S
E
P
H
L
A
Q
V
V
A
E
D
L
L
SP
S
V
V
-----
D
V
-
G
D
F
T
-
I
S
I
N
E
G
----
L
P
S
G
V
P
C
T
S
Q
W
N
S
I
A
H
W
L
L
T
L
C
--------
A
L
S
E
--
V
T
N
L
S
--
P
-
D
I
I
Q
A
N
S
L
F
S
F
--------------
Y
G
-
D
D
E
I
V
S
T
D
I
K
L
D
P
E
K
L
T
-------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
38.52
26%
-24
- C3 -
3BSO
5
?
A:
[227-302]
--------------------------------------------------------------------------------------------------------------------------------------
I
I
F
E
R
H
S
-
R
Y
R
Y
H
Y
D
A
D
Y
S
R
W
D
ST
Q
Q
R
A
V
L
A
A
A
L
E
-----
I
M
V
K
-
F
S
-
S
E
P
H
L
A
Q
V
V
A
E
D
L
L
SP
S
V
V
-----
D
V
-
G
D
F
T
-
I
S
I
N
E
G
----
L
P
S
G
V
P
C
T
S
Q
W
N
S
I
A
H
W
L
L
T
L
C
--------
A
L
S
E
--
V
T
N
L
S
--
P
-
D
I
I
Q
A
N
S
L
F
S
F
--------------
Y
G
-
D
D
E
I
V
S
T
D
I
K
L
D
P
E
K
L
T
-------------------------------------------------------------------------------------------------
28
HHSearch
38.42
17%
-25
- C3 -
3LF5
2
NB5R4_HUMAN
A:
[7-43]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
--------
V
T
E
E
--
E
L
K
K
H
NK
K
-
D
D
C
W
I
C
I
R
G
F
V
--------------
Y
N
-
V
S
P
Y
M
E
Y
H
P
G
G
E
D
E
L
M
R
-------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
38.12
26%
-26
- C3 -
3H5Y
6
?
A:
[227-302]
--------------------------------------------------------------------------------------------------------------------------------------
I
I
F
E
R
H
S
-
R
Y
R
Y
H
Y
D
A
D
Y
S
R
W
D
ST
Q
Q
R
A
V
L
A
A
A
L
E
-----
I
M
V
K
-
F
S
-
S
E
P
H
L
A
Q
V
V
A
E
D
L
L
SP
S
V
V
-----
D
V
-
G
D
F
T
-
I
S
I
N
E
G
----
L
P
S
G
V
P
C
T
S
Q
W
N
S
I
A
H
W
L
L
T
L
C
--------
A
L
S
E
--
V
T
N
L
S
--
P
-
D
I
I
Q
A
N
S
L
F
S
F
--------------
Y
G
-
D
D
E
I
V
S
T
D
I
K
L
D
P
E
K
L
T
-------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
37.52
26%
-24
- C3 -
4QPX
5
?
A:
[227-302]
--------------------------------------------------------------------------------------------------------------------------------------
I
I
F
E
R
H
S
-
R
Y
R
Y
H
Y
D
A
D
Y
S
R
W
D
ST
Q
Q
R
A
V
L
A
A
A
L
E
-----
I
M
V
K
-
F
S
-
S
E
P
H
L
A
Q
V
V
A
E
D
L
L
SP
S
V
V
-----
D
V
-
G
D
F
T
-
I
S
I
N
E
G
----
L
P
S
G
V
P
C
T
S
Q
W
N
S
I
A
H
W
L
L
T
L
C
--------
A
L
S
E
--
V
T
N
L
S
--
P
-
D
I
I
Q
A
N
S
L
F
S
F
--------------
Y
G
-
D
D
E
I
V
S
T
D
I
K
L
D
P
E
K
L
T
-------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
37.50
26%
-22
- C3 -
1SH2
-
?
A:
[227-302]
--------------------------------------------------------------------------------------------------------------------------------------
I
I
F
E
R
H
S
-
R
Y
R
Y
H
Y
D
A
D
Y
S
R
W
D
ST
Q
Q
R
A
V
L
A
A
A
L
E
-----
I
M
V
K
-
F
S
-
S
E
P
H
L
A
Q
V
V
A
E
D
L
L
SP
S
V
V
-----
D
V
-
G
D
F
T
-
I
S
I
N
E
G
----
L
P
S
G
V
P
C
T
S
Q
W
N
S
I
A
H
W
L
L
T
L
C
--------
A
L
S
E
--
V
T
N
L
S
--
P
-
D
I
I
Q
A
N
S
L
F
S
F
--------------
Y
G
-
D
D
E
I
V
S
T
D
I
K
L
D
P
E
K
L
T
-------------------------------------------------------------------------------------------------