@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : gbs1750: (2015-12-10 )
MNRLSWEDYFMANAELISKRSTCDRAFVGAVLVKNNRIIATGYNGGVSETDNCNEVGHYMEDGHCIRTVHAEMNALIQCAKEGISTNNTEIYVTHFPCINCTKALLQAGVKKITYKANYRPHPFAIELMEAKGVAYVQHDVPEVTLGMEE
Atome Classification :
(20 SA)
.........10........20--..---...--....30....-....40........50...-----------......60------------------.......-------------------..-70........80.......---.90.......------.------100----.........110.......-120-----.----......130......----.140.......150--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
MNRL
S
W
E
D
Y
F
M
A
N
A
E
L
I
SKR---ST---C
D
R
--
A
F
V
G
A
V
L
V
KN-
N
R
I
I
A
TGYNGGVSET-D
N
C
-----------
N
E
V
G
HYM-------------------EDG
H
C
I
R
-------------------
T
V
-
H
A
E
M
N
A
L
I
Q
C
A
K
EGISTNN---
T
E
I
Y
V
T
HFP
C
------
I
------
N
------
C
T
K
A
L
L
Q
A
G
V
K
K
I
T
Y
KANY-RPH-----
P
----
F
A
I
E
L
MEAK
G
V
A
Y
V
Q----HDVP
E
V
TLGMEE----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
PsiBlast_CBE
95.11
86%
-128
- C5 -
2HVW
6
?
C:
[38-182]
--
R
L
S
W
Q
D
Y
F
M
A
N
A
E
L
I
S
K
R
---
S
T
---
C
N
R
--
A
Y
V
G
A
V
L
V
K
N
-
N
R
I
I
A
T
G
Y
N
G
G
V
A
D
T
-
D
N
C
-----------
D
D
V
G
H
E
M
-------------------
E
D
G
H
C
I
R
-------------------
T
V
-
H
A
E
M
N
A
L
I
Q
C
A
K
E
G
I
S
A
N
N
---
T
E
I
Y
V
T
H
F
P
C
------
I
------
N
------
C
T
K
A
L
L
Q
A
G
V
K
K
I
T
Y
N
T
A
Y
-
R
I
H
-----
P
----
F
A
I
E
L
M
T
Q
K
E
V
E
Y
V
Q
----
H
D
V
P
R
V
K
L
G
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
PsiBlast_CBE
94.80
86%
-127
- C5 -
2HVW
8
?
B:
[38-182]
--
R
L
S
W
Q
D
Y
F
M
A
N
A
E
L
I
S
K
R
---
S
T
---
C
N
R
--
A
Y
V
G
A
V
L
V
K
N
-
N
R
I
I
A
T
G
Y
N
G
G
V
A
D
T
-
D
N
C
-----------
D
D
V
G
H
E
M
-------------------
E
D
G
H
C
I
R
-------------------
T
V
-
H
A
E
M
N
A
L
I
Q
C
A
K
E
G
I
S
A
N
N
---
T
E
I
Y
V
T
H
F
P
C
------
I
------
N
------
C
T
K
A
L
L
Q
A
G
V
K
K
I
T
Y
N
T
A
Y
-
R
I
H
-----
P
----
F
A
I
E
L
M
T
Q
K
E
V
E
Y
V
Q
----
H
D
V
P
R
V
K
L
G
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
72
Fugue
94.31
86%
-129
- C5 -
2HVW
5
?
A:
[37-183]
-
N
R
L
S
W
Q
D
Y
F
M
A
N
A
E
L
I
S
K
R
---
S
T
---
C
N
R
--
A
Y
V
G
A
V
L
V
K
N
-
N
R
I
I
A
T
G
Y
N
G
G
V
A
D
T
-
D
N
C
-----------
D
D
V
G
H
E
M
-------------------
E
D
G
H
C
I
R
-------------------
T
V
-
H
A
E
M
N
A
L
I
Q
C
A
K
E
G
I
S
A
N
N
---
T
E
I
Y
V
T
H
F
P
C
------
I
------
N
------
C
T
K
A
L
L
Q
A
G
V
K
K
I
T
Y
N
T
A
Y
-
R
I
H
-----
P
----
F
A
I
E
L
M
T
Q
K
E
V
E
Y
V
Q
----
H
D
V
P
R
V
K
L
G
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
94.18
86%
-129
- C5 -
2HVW
5
?
A:
[37-182]
-
N
R
L
S
W
Q
D
Y
F
M
A
N
A
E
L
I
S
K
R
---
S
T
---
C
N
R
--
A
Y
V
G
A
V
L
V
K
N
-
N
R
I
I
A
T
G
Y
N
G
G
V
A
D
T
-
D
N
C
-----------
D
D
V
G
H
E
M
-------------------
E
D
G
H
C
I
R
-------------------
T
V
-
H
A
E
M
N
A
L
I
Q
C
A
K
E
G
I
S
A
N
N
---
T
E
I
Y
V
T
H
F
P
C
------
I
------
N
------
C
T
K
A
L
L
Q
A
G
V
K
K
I
T
Y
N
T
A
Y
-
R
I
H
-----
P
----
F
A
I
E
L
M
T
Q
K
E
V
E
Y
V
Q
----
H
D
V
P
R
V
K
L
G
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
52
HHSearch
92.92
85%
-129
- C5 -
2HVW
5
?
A:
[37-182]
-
N
R
L
S
W
Q
D
Y
F
M
A
N
A
E
L
I
S
K
R
---
S
T
---
C
N
R
--
A
Y
V
G
A
V
L
V
K
N
-
N
R
I
I
A
T
G
Y
N
G
G
V
A
D
T
-
D
N
C
-----------
D
D
V
G
H
E
M
-------------------
E
D
G
H
C
I
R
-------------------
T
V
-
H
A
E
M
N
A
L
I
Q
C
A
K
E
G
I
S
A
N
N
---
T
E
I
Y
V
T
H
F
P
C
------
I
------
N
------
C
T
K
A
L
L
Q
A
G
V
K
K
I
T
Y
N
T
A
Y
-
R
I
H
P
----
F
----
A
I
-
E
L
M
T
Q
K
E
V
E
Y
V
Q
----
H
D
V
P
R
V
K
L
G
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
PsiBlast_CBE
91.09
86%
-115
- C5 -
2HVV
8
?
B:
[39-181]
---
L
S
W
Q
D
Y
F
M
A
N
A
E
L
I
S
K
R
---
S
T
---
C
N
R
--
A
Y
V
G
A
V
L
V
K
N
-
N
R
I
I
A
T
G
Y
N
G
G
V
A
D
T
-
D
N
C
-----------
D
D
V
G
H
E
M
-------------------
E
D
G
H
C
I
R
-------------------
T
V
-
H
A
E
M
N
A
L
I
Q
C
A
K
E
G
I
S
A
N
N
---
T
E
I
Y
V
T
H
F
P
C
------
I
------
N
------
C
T
K
A
L
L
Q
A
G
V
K
K
I
T
Y
N
T
A
Y
-
R
I
H
-----
P
----
F
A
I
E
L
M
T
Q
K
E
V
E
Y
V
Q
----
H
D
V
P
R
V
K
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
90.94
86%
-112
- C5 -
2HVV
9
?
A:
[39-181]
---
L
S
W
Q
D
Y
F
M
A
N
A
E
L
I
S
K
R
---
S
T
---
C
N
R
--
A
Y
V
G
A
V
L
V
K
N
-
N
R
I
I
A
T
G
Y
N
G
G
V
A
D
T
-
D
N
C
-----------
D
D
V
G
H
E
M
-------------------
E
D
G
H
C
I
R
-------------------
T
V
-
H
A
E
M
N
A
L
I
Q
C
A
K
E
G
I
S
A
N
N
---
T
E
I
Y
V
T
H
F
P
C
------
I
------
N
------
C
T
K
A
L
L
Q
A
G
V
K
K
I
T
Y
N
T
A
Y
-
R
I
H
-----
P
----
F
A
I
E
L
M
T
Q
K
E
V
E
Y
V
Q
----
H
D
V
P
R
V
K
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
72.45
30%
-123
- C5 -
1VQ2
3
DCTD_BPT4
A:
[10-179]
-------------
A
Y
L
V
S
Q
E
---
S
K
---
C
C
S
--
W
K
V
G
A
V
I
E
K
N
-
G
R
I
I
S
T
G
Y
N
G
S
P
A
G
G
-
V
N
C
C
D
Y
A
A
E
Q
GWLL
N
K
-------------------------------RFVLAKEH
R
S
A
H
S
E
W
S
S
K
N
E
I
-
H
A
E
L
N
A
I
L
F
A
A
E
N
G
S
S
I
E
G
---
A
T
M
Y
V
T
L
S
P
C
------
P
------
D
------
C
A
K
A
I
A
Q
S
G
I
K
K
L
V
Y
C
E
T
Y
D
K
N
K
-----
P
----
G
W
D
D
I
L
R
N
A
G
I
E
V
F
------
N
V
P
K
K
N
L
N
K
L
N
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
53
HHSearch
66.16
33%
-98
- C5 -
1VQ2
3
DCTD_BPT4
A:
[2-181]
-----
K
A
S
T
V
L
Q
I
A
Y
L
V
S
Q
E
---
S
K
---
C
C
S
--
W
K
V
G
A
V
I
E
K
N
-
G
R
I
I
S
T
G
Y
N
G
S
P
A
G
G
-
V
N
C
-----------
C
D
Y
A
A
E
Q
GWLLNKRFVLAKEH
R
S
A
H
S
E
W
S
S
K
-
N
-------------------
E
I
-
H
A
E
L
N
A
I
L
F
A
A
E
N
G
S
S
I
E
G
---
A
T
M
Y
V
T
L
S
P
C
------
P
------
D
------
C
A
K
A
I
A
Q
S
G
I
K
K
L
V
Y
C
E
T
Y
-
D
K
N
K----
P
----
G
W
D
D
I
L
R
N
A
G
I
E
V
F
N
----
V
P
K
K
N
L
N
K
L
N
W
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
54
HHSearch
65.46
28%
-104
- C5 -
2W4L
4
DCTD_HUMAN
A:
[8-155]
-
D
Y
L
E
W
P
E
Y
F
M
A
V
A
F
L
S
A
Q
R
---
S
K
---
D
P
N
--
S
Q
V
G
A
C
I
V
N
S
E
N
K
I
V
G
I
G
Y
N
G
M
P
N
G
C
-
S
D
D
-----------
V
L
P
W
R
R
T
AENKL--------------
D
T
K
Y
P
-
Y
-------------------
V
C
-
H
A
E
L
N
A
I
M
N
------
D
V
K
G
---
C
S
M
Y
V
A
L
F
P
C
------
N
------
E
------
C
A
K
L
I
I
Q
A
G
I
K
E
V
I
F
M
S
D
K
-
Y
H
D
S
D
E
A
T
A
----
A
R
-
L
L
F
N
M
A
G
V
T
F
R
K
----
F
I
P
K
C
S
K
I
V
I
D
F
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
73
Fugue
65.06
31%
-107
- C5 -
2B3Z
1
RIBD_BACSU
A:
[13-371]
-----
M
E
E
Y
Y
M
K
L
A
L
D
L
A
K
Q
G
EG
Q
T
---
E
S
N
--
P
L
V
G
A
V
V
V
K
D
-
G
Q
I
V
G
M
G
A
H
L
K
Y
G
E
A
----------------------------------------------------------------------
H
A
E
V
H
A
I
H
M
A
---
G
A
H
A
E
G
---
A
D
I
Y
V
T
L
E
P
C
------
S
------
H
YGKTPP
C
A
E
L
I
I
N
S
G
I
K
R
V
F
V
-
A
M
R
-
D
P
N
-----
P
--------
L
V
A
G
R
G
I
S
M
M
K
----
E
A
G
I
E
V
R
E
G
I
L
A
D
Q
A
E
R
L
N
E
K
F
L
H
F
M
R
T
GL
P
Y
V
T
L
K
A
A
A
S
LDGKIATSTGDSKWITS
E
A
A
R
Q
D
A
Q
Q
Y
R
K
T
H
Q
S
I
L
V
G
V
G
T
V
K
A
DNPSLTCRLPNVTKQ
P
V
R
V
I
L
D
TVLSIPEDAKVICDQI
A
P
T
W
I
F
T
T
ARAD
E
E
K
K
K
R
L
S
A
F
G
V
N
I
F
T
L
ETERIQ
I
P
D
V
L
K
I
L
A
E
E
GIMSVYVEGG
S
A
V
H
G
S
F
V
K
E
GCFQ
E
I
I
F
Y
F
A
P
K
L
I
G
G
THAPSL
I
S
G
EGFQSMKD
V
P
L
L
Q
FT
D
I
T
Q
I
GR
D
I
K
L
T
A
K
P
T
38
PsiBlast_CBE
63.64
44%
-103
- C5 -
4P9C
3
?
C:
[9-120]
------
K
E
A
Y
M
K
T
A
E
L
F
S
Q
V
---
S
N
---
C
K
R
--
M
K
V
G
A
I
V
V
K
N
-
G
S
I
L
A
H
G
W
N
G
T
P
S
G
F
H
T
N
C
-----------
C
E
----
L
-------------------
E
D
G
S
T
N
P
-------------------
F
V
L
H
A
E
Q
N
A
L
V
K
M
A
K
S
S
E
S
I
D
G
---
S
E
L
F
C
T
H
S
P
C
------
P
------
D
------
C
S
K
M
I
A
Q
A
G
V
K
K
V
Y
Y
R
N
E
Y
-
R
I
T
-----
D
----
G
I
D
V
L
Q
Q
L
G
V
E
V
E
K
M
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
63.59
30%
-93
- C5 -
2A8N
1
TADA_AGRFC
A:
[2-131]
----
A
E
R
T
H
F
M
E
L
A
-
L
V
E
A
R
---
S
A
---
G
E
R
DE
V
P
I
G
A
V
L
V
L
D
-
G
R
V
I
A
R
S
G
N
----
R
T
-
R
E
L
-----------
N
D
V
-------------------------------------------------
T
A
-
H
A
E
I
-
A
V
I
R
M
A
C
E
A
L
G
Q
E
R
LPG
A
D
L
Y
V
T
L
E
P
C
------
T
------
M
------
C
A
A
A
I
S
F
A
R
I
R
R
L
Y
Y
G
A
Q
--
D
P
K
-----
G
----
G
A
V
E
----
S
G
V
R
F
F
S
QPTC
H
H
A
P
D
V
Y
S
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
PsiBlast_CBE
63.38
44%
-99
- C5 -
4P9C
1
?
G:
[9-120]
------
K
E
A
Y
M
K
T
A
E
L
F
S
Q
V
---
S
N
---
C
K
R
--
M
K
V
G
A
I
V
V
K
N
-
G
S
I
L
A
H
G
W
N
G
T
P
S
G
F
H
T
N
C
-----------
C
E
----
L
-------------------
E
D
G
S
T
N
P
-------------------
F
V
L
H
A
E
Q
N
A
L
V
K
M
A
K
S
S
E
S
I
D
G
---
S
E
L
F
C
T
H
S
P
C
------
P
------
D
------
C
S
K
M
I
A
Q
A
G
V
K
K
V
Y
Y
R
N
E
Y
-
R
I
T
-----
D
----
G
I
D
V
L
Q
Q
L
G
V
E
V
E
K
M
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
37
PsiBlast_CBE
63.36
44%
-101
- C5 -
4P9C
3
?
D:
[9-120]
------
K
E
A
Y
M
K
T
A
E
L
F
S
Q
V
---
S
N
---
C
K
R
--
M
K
V
G
A
I
V
V
K
N
-
G
S
I
L
A
H
G
W
N
G
T
P
S
G
F
H
T
N
C
-----------
C
E
----
L
-------------------
E
D
G
S
T
N
P
-------------------
F
V
L
H
A
E
Q
N
A
L
V
K
M
A
K
S
S
E
S
I
D
G
---
S
E
L
F
C
T
H
S
P
C
------
P
------
D
------
C
S
K
M
I
A
Q
A
G
V
K
K
V
Y
Y
R
N
E
Y
-
R
I
T
-----
D
----
G
I
D
V
L
Q
Q
L
G
V
E
V
E
K
M
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
65
HHSearch
62.74
26%
-106
- C5 -
2HXV
4
?
A:
[13-146]
-----
M
Y
E
T
F
M
K
R
A
I
E
L
A
K
K
---
G
L
GRV
N
P
N
--
P
P
V
G
A
V
V
V
K
D
-
G
R
I
I
A
E
G
F
H
P
Y
F
--------------------------------------------------
G
-------------------
G
P
-
H
A
E
R
M
A
I
E
S
A
R
K
K
G
E
D
L
R
G
---
A
T
L
I
V
T
L
E
P
C
DHHGKT
P
------
P
------
C
T
D
L
I
I
E
S
G
I
K
T
V
V
I
G
T
R
D
-
P
N
P
VSG--
N
----
G
V
-
E
K
F
R
N
H
G
I
E
V
I
E
----
G
V
L
E
E
E
V
K
K
L
C
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
PsiBlast_CBE
62.61
44%
-95
- C5 -
4P9D
7
?
B:
[9-120]
------
K
E
A
Y
M
K
T
A
E
L
F
S
Q
V
---
S
N
---
C
K
R
--
M
K
V
G
A
I
V
V
K
N
-
G
S
I
L
A
H
G
W
N
G
T
P
S
G
F
H
T
N
C
-----------
C
E
----
L
-------------------
E
D
G
S
T
N
P
-------------------
F
V
L
H
A
E
Q
N
A
L
V
K
M
A
K
S
S
E
S
I
D
G
---
S
E
L
F
C
T
H
S
P
C
------
P
------
D
------
C
S
K
M
I
A
Q
A
G
V
K
K
V
Y
Y
R
N
E
Y
-
R
I
T
-----
D
----
G
I
D
V
L
Q
Q
L
G
V
E
V
E
K
M
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
66
HHSearch
62.27
24%
-105
- C5 -
2B3Z
1
RIBD_BACSU
A:
[13-144]
-----
M
E
E
Y
Y
M
K
L
A
L
D
L
A
K
Q
---
G
E
GQT
E
S
N
--
P
L
V
G
A
V
V
V
K
D
-
G
Q
I
V
G
M
G
A
H
L
K
Y
--------------------------------------------------
G
-------------------
E
A
-
H
A
E
V
H
A
I
H
M
A
G
A
---
H
A
E
G
---
A
D
I
Y
V
T
L
E
P
C
------
S
HYGKTP
P
------
C
A
E
L
I
I
N
S
G
I
K
R
V
F
V
A
M
R
D
-
P
N
P
-----
L
VAG
R
G
I
-
S
M
M
K
E
A
G
I
E
V
R
E
----
G
I
L
A
D
Q
A
E
R
L
N
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
62.18
44%
-99
- C5 -
4P9D
7
?
A:
[9-120]
------
K
E
A
Y
M
K
T
A
E
L
F
S
Q
V
---
S
N
---
C
K
R
--
M
K
V
G
A
I
V
V
K
N
-
G
S
I
L
A
H
G
W
N
G
T
P
S
G
F
H
T
N
C
-----------
C
E
----
L
-------------------
E
D
G
S
T
N
P
-------------------
F
V
L
H
A
E
Q
N
A
L
V
K
M
A
K
S
S
E
S
I
D
G
---
S
E
L
F
C
T
H
S
P
C
------
P
------
D
------
C
S
K
M
I
A
Q
A
G
V
K
K
V
Y
Y
R
N
E
Y
-
R
I
T
-----
D
----
G
I
D
V
L
Q
Q
L
G
V
E
V
E
K
M
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
PsiBlast_CBE
62.12
44%
-96
- C5 -
4P9D
6
?
D:
[9-120]
------
K
E
A
Y
M
K
T
A
E
L
F
S
Q
V
---
S
N
---
C
K
R
--
M
K
V
G
A
I
V
V
K
N
-
G
S
I
L
A
H
G
W
N
G
T
P
S
G
F
H
T
N
C
-----------
C
E
----
L
-------------------
E
D
G
S
T
N
P
-------------------
F
V
L
H
A
E
Q
N
A
L
V
K
M
A
K
S
S
E
S
I
D
G
---
S
E
L
F
C
T
H
S
P
C
------
P
------
D
------
C
S
K
M
I
A
Q
A
G
V
K
K
V
Y
Y
R
N
E
Y
-
R
I
T
-----
D
----
G
I
D
V
L
Q
Q
L
G
V
E
V
E
K
M
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------