@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu35270: (2016-07-29 )
MKSKLSILMIGFALSVLLAACGSNDAKEEKTDTGSKTEATASEGEELYQQSCVGCHGKDLEGVSGPNLQEVGGKYDEHKIESIIKNGRGNMPKGLVDDNEAAVIAKWLSEKK
Atome Classification :
(20 SA)
------------.........10........20........30........40.......-.-50........60----------------------------..--.....-.70..-----------------------..-----.-----...80.......-------------------.------90-.---.-----.--..-------------------------------------..-.100.......110----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------MKS
K
L
S
I
L
M
I
G
F
A
L
S
V
L
L
A
ACGSNDAKEEKTDTGSKTEA
T
A
S
E
G
E
E
L
Y
-
Q
-
Q
SCVGCHGKDLE----------------------------GV--SGP
N
L
-
Q
E
VGG-----------------------K
Y
-----
D
-----
E
H
K
I
E
S
I
I
K
NGR-------------------G------NM-P---K-----G--LV-------------------------------------DD-N
E
A
A
V
I
A
K
W
L
SEKK----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
73
Fugue
77.61
45%
-94
- C1 -
1C75
1
CY553_SPOPA
A:
[1-71]
-----------------------------------------------------
V
D
A
E
A
V
V
-
Q
-
Q
K
C
I
S
C
H
G
G
D
L
T
----------------------------
G
A
--
S
A
P
A
I
-
D
K
A
G
A
-----------------------
N
Y
-----
S
-----
E
E
E
I
L
D
I
I
L
N
G
Q
-------------------
G
------
G
M
-
P
---
G
-----
G
--
I
A
-------------------------------------
K
G
-
A
E
A
E
A
V
A
A
W
L
A
E
K
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
72
Fugue
77.43
45%
-101
- C1 -
1K3G
1
CY553_SPOPA
A:
[1-71]
-----------------------------------------------------
V
D
A
E
A
V
V
-
Q
-
Q
K
C
I
S
C
H
G
G
D
L
T
----------------------------
G
A
--
S
A
P
A
I
-
D
K
A
G
A
-----------------------
N
Y
-----
S
-----
E
E
E
I
L
D
I
I
L
N
G
Q
-------------------
G
------
G
M
-
P
---
G
-----
G
--
I
A
-------------------------------------
K
G
-
A
E
A
E
A
V
A
A
W
L
A
E
K
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
75.55
45%
-95
- C1 -
1C75
1
CY553_SPOPA
A:
[2-71]
------------------------------------------------------
D
A
E
A
V
V
-
Q
-
Q
K
C
I
S
C
H
G
G
D
L
T
----------------------------
G
A
--
S
A
P
A
I
-
D
K
A
G
A
-----------------------
N
Y
-----
S
-----
E
E
E
I
L
D
I
I
L
N
G
Q
-------------------
G
------
G
M
-
P
---
G
-----
G
--
I
A
-------------------------------------
K
G
-
A
E
A
E
A
V
A
A
W
L
A
E
K
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
74.85
45%
-100
- C1 -
1K3G
1
CY553_SPOPA
A:
[2-71]
------------------------------------------------------
D
A
E
A
V
V
-
Q
-
Q
K
C
I
S
C
H
G
G
D
L
T
----------------------------
G
A
--
S
A
P
A
I
-
D
K
A
G
A
-----------------------
N
Y
-----
S
-----
E
E
E
I
L
D
I
I
L
N
G
Q
-------------------
G
------
G
M
-
P
---
G
-----
G
--
I
A
-------------------------------------
K
G
-
A
E
A
E
A
V
A
A
W
L
A
E
K
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
74.85
45%
-96
* C1 *
1B7V
1
CY553_SPOPA
A:
[2-71]
------------------------------------------------------
D
A
E
A
V
V
-
Q
-
Q
K
C
I
S
C
H
G
G
D
L
T
----------------------------
G
A
--
S
A
P
A
I
-
D
K
A
G
A
-----------------------
N
Y
-----
S
-----
E
E
E
I
L
D
I
I
L
N
G
Q
-------------------
G
------
G
M
-
P
---
G
-----
G
--
I
A
-------------------------------------
K
G
-
A
E
A
E
A
V
A
A
W
L
A
E
K
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
74.35
45%
-96
- C1 -
1K3H
1
CY553_SPOPA
A:
[2-71]
------------------------------------------------------
D
A
E
A
V
V
-
Q
-
Q
K
C
I
S
C
H
G
G
D
L
T
----------------------------
G
A
--
S
A
P
A
I
-
D
K
A
G
A
-----------------------
N
Y
-----
S
-----
E
E
E
I
L
D
I
I
L
N
G
Q
-------------------
G
------
G
M
-
P
---
G
-----
G
--
I
A
-------------------------------------
K
G
-
A
E
A
E
A
V
A
A
W
L
A
E
K
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
72.87
45%
-85
- C1 -
1N9C
1
CY553_SPOPA
A:
[2-71]
------------------------------------------------------
D
A
E
A
V
V
-
Q
-
Q
K
C
I
S
C
H
G
G
D
L
T
----------------------------
G
A
--
S
A
P
A
I
-
D
K
A
G
A
-----------------------
N
Y
-----
S
-----
E
E
E
I
L
D
I
I
L
N
G
Q
-------------------
G
------
G
M
-
P
---
G
-----
G
--
I
A
-------------------------------------
K
G
-
A
E
A
E
A
V
A
A
W
L
A
E
K
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
80
HHSearch
69.56
45%
-58
- C1 -
1C75
1
CY553_SPOPA
A:
[2-71]
------------------------------------------------------
D
A
E
A
V
V
-
Q
-
Q
K
C
I
S
C
H
G
G
D
L
T
----------------------------
G
A
--
S
A
P
A
I
-
D
K
A
G
A
-----------------------
N
Y
-----
S
-----
E
E
E
I
L
D
I
I
L
N
G
Q
-------------------
G
------
G
M
-
P
---
G
--------
G
I
-------------------------------------
A
K
G
A
E
A
E
A
V
A
A
W
L
A
E
K
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
96
HHSearch
63.48
26%
-35
- C1 -
3CP5
2
?
A:
[30-120]
------------------------------------------------
D
A
A
L
A
Q
Q
G
E
Q
L
F
-
N
-
T
Y
C
T
A
C
H
R
L
D
E
R
----------------------------
F
---
I
G
P
A
L
-
R
D
V
T
K
-----------------------
R
R
-----
G
-----
P
V
Y
I
M
N
V
M
L
N
P
N
G
M
I
Q
RH
P
V
M
K
Q
L
V
Q
E
YG--
T
------
M
M
-
T
---
D
-----
M
---
A
-------------------------------------
L
S
E
E
Q
A
R
A
I
L
E
Y
L
R
Q
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
PsiBlast_CBE
59.97
34%
45
- C1 -
2EXV
3
CY551_PSEAE
C:
[12-82]
-----------------------------------------------------------------
C
V
A
C
H
A
I
D
T
K
----------------------------
M
V
---
G
P
A
Y
-
K
D
V
A
A
-----------------------
K
F
-----
A
GQAGA
E
A
E
L
A
Q
R
I
K
N
G
S
-------------------
Q
GVWGPI
P
M
-
P
---
P
-----
N
--
A
V
-------------------------------------
S
D
-
D
E
A
Q
T
L
A
K
W
V
L
S
Q
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
75
Fugue
58.78
20%
63
- C1 -
1NIR
9
NIRS_PSEAE
A:
[6-543]
A
A
E
Q
Y
Q
GAASAV
D
P
A
H
V
V
R
T
---
N
G
A
P
D
M
-------------------
S
E
S
E
F
N
E
A
K
Q
I
Y
-
F
-
Q
R
C
A
G
C
H
G
V
L
R
K
----------------------------
G
A
--
T
G
K
P
L
T
P
D
I
T
Q
-----------------------
Q
R
-----
G
-----
Q
Q
Y
L
E
A
L
I
T
Y
G
T
-------------------
P
------
L
G
-
M
---
P
NWGSS
G
--
E
L
-------------------------------------
S
K
-
E
Q
I
T
L
M
A
K
Y
I
Q
H
T
P
P
Q
P
P
EWG
M
P
E
M
R
E
S
WKVLVKPEDRPKKQLNDLDLPN
L
F
S
V
T
LRDAG
Q
I
A
L
V
D
GDSKKIV
K
V
I
D
T
G
YAVH
I
S
R
M
S
ASGR
Y
L
L
V
I
G
RDA
R
I
D
M
I
D
LWAKEPTKVAEIKIGIEAR
S
V
E
S
SKFKGYEDR
Y
T
I
A
G
A
YWPP
Q
F
A
I
M
DGETLEPK
Q
I
V
S
T
R
G
M
T
VDTQTYHPEPRV
A
A
I
I
A
S
HEHP
E
F
I
V
N
V
K
ETGKVLLVNYKDID
N
L
T
V
T
S
I
G
A
A
PFLHDGGWDSSHR
Y
F
M
T
A
ANNSN
K
V
A
V
I
DSKDRRLS
A
L
V
D
V
G
KTPHPGR
G
A
N
F
V
H
PKY
G
P
V
W
S
T
S
H
LGDG
S
I
S
L
I
G
TDPKNHPQYAWKKV
A
E
L
Q
G
QGGGSL
F
I
K
T
H
PKSS
H
L
Y
V
D
TTFNPD
A
R
I
S
Q
S
V
A
V
F
D
LKNLD
A
K
Y
Q
V
L
P
I
A
E
W
A
DLGEGAKRV
V
Q
P
E
Y
N
KRGD
E
V
W
F
S
VWNGKN
D
S
S
A
L
V
V
V
DDKTLKLK
A
V
V
K
D
PRLITP
T
G
K
F
N
V
Y
N
T
Q
H
DVY
85
HHSearch
58.39
30%
58
- C1 -
3MK7
5
?
B:
[48-196]
-----------------------------------------------
P
Y
T
A
L
Q
L
E
G
R
D
L
Y
-
I
R
E
G
C
V
G
C
H
S
Q
M
I
R
PF
R
A
E
T
E
R
YGHYSVAGESVYDHPFLWGS
K
R
--
T
G
P
D
L
-
A
R
V
G
G
-----------------------
R
Y
-----
S
-----
D
D
W
H
R
A
H
L
Y
N
P
R
NVVPE--------------
S
------
K
M
-
P
---
S
-----
Y
--
P
W
LVENTLDGKD
T
A
K
K
M
S
A
L
R
M
L
GVPYTEEDIAG
A
R
D
S
V
N
G
K
T
E
M
D
A
M
V
A
Y
L
Q
V
L
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
83
HHSearch
57.98
35%
55
- C1 -
2EXV
2
CY551_PSEAE
A:
[1-82]
-----------------------------------------------------
E
D
P
E
V
L
A
K
N
-
K
G
C
V
A
C
H
A
I
D
T
K
----------------------------
M
---
V
G
P
A
Y
-
K
D
V
A
A
-----------------------
K
F
AGQAG
A
-----
E
A
E
L
A
Q
R
I
K
N
G
S
QGVWGP-------------
I
------
P
M
-
P
---
P
-----
N
--
A
--------------------------------------
V
S
D
D
E
A
Q
T
L
A
K
W
V
L
S
Q
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
74
Fugue
57.11
32%
-27
- C1 -
1DII
1
CY4C_PSEPU
C:
[2-74]
--------------------------------------------------
S
Q
W
G
S
G
K
N
L
Y
-
D
-
K
V
C
G
H
C
H
K
P
E
V
G
--------------------------------
V
G
P
V
L
-
E
--
G
R
-----------------------
G
L
-----
P
-----
E
A
Y
I
K
D
I
V
R
N
G
F
-------------------
R
------
A
M
-
P
AFP
A
-----
S
--
Y
V
-------------------------------------
D
D
-
E
S
L
T
Q
V
A
E
Y
L
S
S
L
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
98
HHSearch
56.74
28%
53
- C1 -
3C2C
1
CYC2_RHORU
A:
[3-112]
---------------------------------------------------
D
A
A
A
G
E
K
V
S
---
K
K
C
L
A
C
H
T
F
D
Q
G
----------------------------
G
A
NK
V
G
P
N
L
-
F
G
V
F
E
NTAAHKDNYAYS
E
S
Y
T
E
M
K
A
K
GL
T
W
-----
T
-----
E
A
N
L
A
A
Y
V
K
N
P
K
A
F
V
L
E
K
S
GDPKAK------
S
------
K
M
-
T
---------
F
--
K
L
-------------------------------------
T
K
D
D
E
I
E
N
V
I
A
Y
L
K
T
L
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
90
HHSearch
56.15
23%
46
- C1 -
1I8O
4
CYC22_RHOPA
A:
[2-114]
---------------------------------------------------
D
A
K
A
G
E
A
V
F
-
K
--
Q
C
M
T
C
H
R
A
D
K
N
----------------------------
M
---
V
G
P
A
L
-
A
G
V
V
G
RKAGTAAG
F
T
Y
S
P
L
N
H
N
S
G
E
A
GL
V
W
-----
T
-----
A
D
N
I
V
P
Y
L
A
D
P
N
A
F
L
K
K
F
L
T
E
K
GKADQA
V
G
V
T
------
K
M
-
T
---------
F
--
K
L
-------------------------------------
A
N
E
Q
Q
R
K
D
V
V
A
Y
L
A
T
L
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
PsiBlast_CBE
56.04
38%
4
- C1 -
2D0W
5
?
B:
[49-122]
-----------------------------------------------------
P
K
G
E
E
I
Y
-
L
-
E
S
C
S
G
C
H
G
H
I
G
E
----------------------------
G
K
--
V
G
P
G
L
-
N
D
S
Y
W
-----------------------
T
Y
PKNTT
D
-----
K
G
L
F
E
T
I
F
G
G
A
N
-------------------
G
------
M
M
G
P
---
H
-----
G
QD
L
E
-------------------------------------
L
D
-
N
M
L
K
L
I
A
-
W
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
55.77
38%
6
- C1 -
2D0W
5
?
A:
[49-122]
-----------------------------------------------------
P
K
G
E
E
I
Y
-
L
-
E
S
C
S
G
C
H
G
H
I
G
E
----------------------------
G
K
--
V
G
P
G
L
-
N
D
S
Y
W
-----------------------
T
Y
PKNTT
D
-----
K
G
L
F
E
T
I
F
G
G
A
N
-------------------
G
------
M
M
G
P
---
H
-----
G
QD
L
E
-------------------------------------
L
D
-
N
M
L
K
L
I
A
-
W
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
55.42
34%
54
- C1 -
2EXV
2
CY551_PSEAE
A:
[12-82]
-----------------------------------------------------------------
C
V
A
C
H
A
I
D
T
K
----------------------------
M
V
---
G
P
A
Y
-
K
D
V
A
A
-----------------------
K
F
-----
A
GQAG
A
E
A
E
L
A
Q
R
I
K
N
G
S
-------------------
Q
GVWGPI
P
M
-
P
---
P
-----
N
--
A
V
-------------------------------------
S
D
-
D
E
A
Q
T
L
A
K
W
V
L
S
Q
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
53.96
32%
82
- C1 -
2I8F
1
CY551_PSEST
A:
[2-78]
------------------------------------------------------
D
G
E
A
L
F
-
K
S
K
P
C
A
A
C
H
S
V
D
T
K
----------------------------
M
V
---
G
P
A
L
-
K
E
V
A
A
-----------------------
K
N
-----
A
GVE
G
A
A
D
T
L
A
L
A
I
K
N
G
S
-------------------
Q
GVWGP
I
P
M
-
P
---
P
-----
N
--
P
V
-------------------------------------
T
E
-
E
E
A
K
I
L
A
E
W
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------