@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Rv2147c: (2016-05-08 )
MNSHCSHTFITDNRSPRARRGHAMSTLHKVKAYFGMAPMEDYDDEYYDDRAPSRGYARPRFDDDYGRYDGRDYDDARSDSRGDLRGEPADYPPPGYRGGYADEPRFRPREFDRAEMTRPRFGSWLRNSTRGALAMDPRRMAMMFEDGHPLSKITTLRPKDYSEARTIGERFRDGSPVIMDLVSMDNADAKRLVDFAAGLAFALRGSFDKVATKVFLLSPADVDVSPEERRRIAETGFYAYQ
Atome Classification :
(20 SA)
---------------------------------.......------..10.-.--------......20.----------..-----.....30......----..40........-50......---..60.---...--....70..--..--------.....80----------..-.....--..90..-......100.....-..110.....--.--.120.......130-.........140...--.....----------------------.150--.......-160....--...170..----...-----..180--...--.--.----------------------------...190------.....-.----------.200.------------------....-..-----210.--.--......--220.......230.......240---------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------MNSHCS
H
------
T
F
I
TD-N--------RSPRARRG
H
----------
A
M
-----
S
T
L
H
K
V
K
A
Y
FGMA----PMEDYDDEYYDD-RAPSRGYA---RPRFD---DDY--GRYDG-RD--YD--------DARSDS-----------RG-DLRGE--PADYPP-PGYRGGYADEPRFR-PREF
D
R
A
EMT--R--
P
R
F
G
S
W
L
R
NSTR---GALAM
D
P
R
R
M
--
A
M
M--FEDGH----------------------PLS
K
--
I
T
TLRPK-
D
Y
S
E
A
R
T
--
I
G
E
RFRDG----S
P
V
-----
I
M
D
-
L
--VSM--D--N----------------------------
A
D
A
K
R
L
------
V
D
F
A
A
-
G
----------
L
A
F
A
L------------------RG
S
F
-
D
K
-----
V
-
A
T
--
K
--
V
F
L
LSP--ADVDV
S
P
E
E
R
R
R
I
A
ETGFYAYQ----------------------------------------------------------
3
PsiBlast_PDB
70.83
30%
-106
- C6 -
3ZII
-
SEPF_BACSU
A:
[62-142]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
K
--
V
V
L
S
E
P
R
-
V
Y
A
E
A
Q
E
--
I
A
D
H
L
K
N
R
----
R
A
V
-----
V
V
N
-
L
--
Q
R
I
--
Q
--
H
----------------------------
D
Q
A
K
R
I
------
V
D
F
L
S
-
K
----------
T
V
Y
A
I
------------------
G
G
D
I
-
Q
R
-----
I
-
G
S
--
D
--
I
F
L
C
T
P
--
D
N
V
D
V
S
G
T
I
S
E
L
--------------------------------------------------------------------
1
PsiBlast_PDB
70.37
32%
-105
- C6 -
3ZIH
-
SEPF_BACSU
A:
[62-139]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
K
--
V
V
L
S
E
P
R
-
V
Y
A
E
A
Q
E
--
I
A
D
H
L
K
N
R
----
R
A
V
-----
V
V
N
-
L
--
Q
R
I
--
Q
--
H
----------------------------
D
Q
A
K
R
I
------
V
D
F
L
S
-
G
----------
T
V
Y
A
I
------------------
G
G
D
I
-
Q
R
-----
I
-
G
S
--
D
--
I
F
L
C
T
P
--
D
N
V
D
V
S
G
T
I
-----------------------------------------------------------------------
26
Fugue
69.72
31%
-104
- C6 -
3ZIH
-
SEPF_BACSU
A:
[61-139]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
S
K
--
V
V
L
S
E
P
R
-
V
Y
A
E
A
Q
E
--
I
A
D
H
L
K
N
R
----
R
A
V
-----
V
V
N
-
L
--
Q
R
I
--
Q
--
H
----------------------------
D
Q
A
K
R
I
------
V
D
F
L
S
-
G
----------
T
V
Y
A
I
------------------
G
G
D
I
-
Q
R
-----
I
-
G
S
--
D
--
I
F
L
C
T
P
--
D
N
V
D
V
S
G
T
I
-----------------------------------------------------------------------
14
HHSearch
69.07
29%
-104
- C6 -
3ZIH
-
SEPF_BACSU
A:
[61-139]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
S
K
--
V
V
L
S
E
P
R
-
V
Y
A
E
A
Q
E
--
I
A
D
H
L
K
N
R
----
R
A
V
-----
V
V
N
-
L
--
Q
R
I
--
Q
--
H
----------------------------
D
Q
A
K
R
I
------
V
D
F
L
S
-
G
----------
T
V
Y
A
I
------------------
G
G
D
I
-
Q
R
-----
I
-
G
S
--
D
--
I
F
L
C
T
P
--
D
N
V
D
V
S
G
T
I
-----------------------------------------------------------------------
34
Fugue
62.92
17%
-8
- C3 -
4TN3
2
ENLYS_BPT4
A:
[27-400]
----------------------------------
V
D
H
C
A
R
HGEKLL
L
F
C
Q
E
-
D
S
K
V
I
C
W
L
C
K
D
S
Q
E
H
R
G
H
----------
H
T
-----
F
L
M
E
E
V
A
Q
E
Y
H
V
K
----
L
Q
T
A
L
E
M
L
R
Q
K
Q
-
Q
E
A
E
K
L
E
A
---
D
I
R
E
E
---
K
A
S
--
W
K
I
Q
--
I
D
--
Y
D
--------
K
T
N
V
S
A
-----------
D
F
-
E
Q
L
R
E
--
I
L
D
W
E
E
-
S
N
E
L
Q
N
L
E
K
E
E
E
D
I
-
L
K
S
L
T
K
S
E
T
E
--
M
--
V
Q
Q
T
Q
Y
M
R
E
L
I
S
----
E
L
E
H
R
L
Q
M
M
--
D
L
L
--
Q
G
V
D
G
----------------------
I
I
K
R
--
I
E
N
M
T
L
F
-
R
A
P
D
L
K
G
--
M
L
D
M
F
R
D
A
AAEE
S
P
V
LLAMN
I
F
E
-
M
--
L
R
I
--
D
--
E
GLRL
K
I
Y
K
N
TEGYYTIGIGHLLTKSPS
L
N
A
A
K
S
E
------
L
D
K
A
I
-
G
RNTNGVIT
K
D
E
A
E
K
L
------------------
F
N
Q
D
-
V
D
-----
A
-
A
V
--
R
--
G
I
L
R
N
A
KL
K
P
V
Y
D
S
L
D
A
V
R
R
A
A
L
I
N
M
V
F
Q
M
G
E
T
G
V
A
G
F
T
N
S
L
R
M
L
Q
Q
KRW
D
E
A
A
V
N
L
A
K
S
R
W
Y
N
Q
T
P
N
R
A
K
R
V
I
T
T
F
R
TGTWDAYKNL
31
Fugue
62.62
21%
-16
- C2 -
4RGL
1
?
A:
[8-335]
---------------YQPP
Y
T
I
T
P
A
I
V
N
L
V
A
E
I
G
E
I
I
G
R
Y
------
T
V
L
A
E
Q
N
--------
L
T
P
R
L
R
R
E
N
----------
R
I
-----
R
T
I
Q
A
S
L
A
I
E
N
N
T
L---
T
L
E
Q
V
T
A
V
I
D
G
K
-
R
V
L
G
H
P
R
E
---
I
Q
E
V
R
---
N
A
F
--
A
T
Y
E
A
M
E
D
--
W
D
ASV
E
G
D
L
L
A
A
H
E
L
L
M
----------
R
G
--
L
V
D
E
--
T
G
R
Y
R
S
-
G
G
-
V
G
I
F
R
G
E
Q
L
V
H
M
A
P
P
A
D
R
V
P
-
K
--
L
M
-
A
D
L
L
D
W
L
E
N
T
N
E
H
P
L
V
A
S
C
I
F
H
Y
E
F
--
E
F
I
HP
F
A
D
G
N
G
R
M
G
R
L
W
Q
T
L
I
L
R
N
W
KPLLAYL
P
V
E
T
--
V
I
R
D
R
Q
E
-
D
Y
Y
R
V
L
A
--
V
A
D
S
Q
A
D
A
----
T
P
F
-----
V
E
F
M
L
--
G
A
L
--
R
--
D
----------------------------
A
V
R
E
A
V
S
T
D
HQV
T
D
Q
V
A
-
A
----------
L
I
R
A
I
GG
G
E
L
S
S
N
D
L
M
Q
A
L
GLSH
R
P
T
F
-
R
N
NY
L
N
P
A
M
E
D
--
E
--
W
I
E
R
T
Q
--
P
D
S
P
R
S
P
T
Q
R
Y
R
L
T
G
K
G
Q
R
-------------------------------------------------------------
32
Fugue
61.78
16%
5
- C1 -
4V12
2
?
A:
[7-343]
DTSTLESRVG
H
Y
Y
Q
M
E
D
T
Y
L
V
G
R
E
K
V
R
E
F
A
R
A
V
Q
D
Y
H
P
A
H
------
W
-----
N
--------
L
A
T
A
A
D
L
G
H
PGLIAPLTFT
S
A
-----
P
A
M
A
C
N
Q
R
M
F
E
S
V
VVGY
D
M
Y
L
Q
T
E
E
V
F
E
Q
-
H
R
P
I
V
E
G
D
---
E
L
S
I
D
I
E
L
T
S
V
--
R
R
I
A
G
-
R
D
--
L
I
--------
T
V
T
N
T
F
T
D
TAGEVV
H
T
L
H
T
-
T
V
V
G
I
--
T
A
E
D
V
D
-
P
A
I
R
P
A
V
Q
G
V
M
M
H
G
-
I
N
M
L
G
V
E
E
T
N
--
A
--
P
Y
E
K
T
V
R
P
E
G
E
L
---
R
I
A
Q
G
G
A
T
R
T
PT
S
L
N
--
F
D
D
L
K
----------------------
V
G
E
E
--
L
P
V
H
T
A
R
L
S
R
G
D
L
V
N
--
Y
A
G
V
A
G
D
A
----
N
P
L
HWD
E
N
I
A
K
-
L
--
A
G
Q
--
P
--
D
----------------------------
V
I
A
H
G
M
------
L
T
M
G
L
-
G
----------
A
G
F
V
S
------------------
S
W
S
G
-
D
P
-----
G
-
A
I
--
T
--
R
Y
A
V
R
L
--
S
Q
P
A
V
V
P
A
E
G
T
E
I
E
Y
S
G
R
I
K
S
L
DPETR
T
G
V
V
I
V
A
A
K
S
GGRKIFG
L
A
T
A
T
I
R
F
S---------------------------
17
HHSearch
60.77
19%
-76
- C6 -
3ZIE
-
?
A:
[38-118]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
--
I
R
V
A
E
V
T
-
G
L
N
E
V
P
E
--
I
K
R
E
I
Y
D
G
----
N
I
V
-----
V
A
D
-
I
--
A
F
I
KH
D
--
K
----------------------------
L
T
L
D
R
V
------
L
K
D
L
R
-
Q
----------
L
A
E
D
V
------------------
K
G
D
I
-
V
G
-----
L
-
G
E
--
D
--
Y
V
I
M
T
P
--
T
G
I
K
V
D
R
N
K
I
R
---------------------------------------------------------------------
27
Fugue
59.79
18%
-73
* C6 *
3ZIE
-
?
A:
[37-119]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
Y
--
I
R
V
A
E
V
T
-
G
L
N
E
V
P
E
--
I
K
R
E
I
Y
D
G
----
N
I
V
-----
V
A
D
-
I
--
A
F
I
KH
D
--
K
----------------------------
L
T
L
D
R
V
------
L
K
D
L
R
-
Q
----------
L
A
E
D
V
------------------
K
G
D
I
-
V
G
-----
L
-
G
E
--
D
--
Y
V
I
M
T
P
--
T
G
I
K
V
D
R
N
K
I
R
S
--------------------------------------------------------------------
15
HHSearch
59.10
36%
-51
- C6 -
3P04
-
?
A:
[65-140]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
Q
S
T
--
I
V
P
V
E
L
H
-
S
F
E
D
A
Q
V
--
I
G
G
A
F
R
D
G
----
D
A
V
-----
V
F
D
-
M
--
S
L
L
--
S
--
R
----------------------------
E
E
A
R
R
I
------
V
D
F
A
A
-
G
----------
L
C
F
A
L
------------------
H
G
K
M
-
Q
K
-----
I
-
D
S
--
V
--
T
F
A
V
V
P
--
E
L
S
N
I
---------------------------------------------------------------------------
2
PsiBlast_PDB
59.04
37%
-49
- C6 -
3P04
-
?
A:
[67-140]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
T
--
I
V
P
V
E
L
H
-
S
F
E
D
A
Q
V
--
I
G
G
A
F
R
D
G
----
D
A
V
-----
V
F
D
-
M
--
S
L
L
--
S
--
R
----------------------------
E
E
A
R
R
I
------
V
D
F
A
A
-
G
----------
L
C
F
A
L
------------------
H
G
K
M
-
Q
K
-----
I
-
D
S
--
V
--
T
F
A
V
V
P
--
E
L
S
N
I
---------------------------------------------------------------------------
25
Fugue
58.32
36%
-59
- C6 -
3P04
-
?
A:
[64-140]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
----------------------
Y
Q
S
T
--
I
V
P
V
E
L
H
-
S
F
E
D
A
Q
V
--
I
G
G
A
F
R
D
G
----
D
A
V
-----
V
F
D
M
S
---
L
L
--
S
--
R
----------------------------
E
E
A
R
R
I
------
V
D
F
A
A
-
G
----------
L
C
F
A
L
------------------
H
G
-
K
M
Q
K
-----
I
-
D
S
--
V
--
T
F
A
V
V
P
--
E
L
S
N
I
---------------------------------------------------------------------------
16
HHSearch
53.72
15%
-56
- C6 -
3ZIG
-
?
A:
[49-130]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
V
V
Y
--
I
K
K
I
V
I
S
-
T
H
A
D
L
K
R
--
V
S
D
E
L
K
S
G
----
N
I
V
-----
I
V
E
-
L
--
T
P
L
--
E
QK
P
----------------------------
E
L
L
K
K
I
------
A
E
Q
L
M
-
T
----------
T
A
S
I
I
------------------
G
G
D
Y
-
A
K
-----
I
-
C
G
--
S
P
L
K
V
I
L
T
P
--
P
E
I
K
I
A
K
-------------------------------------------------------------------------
33
Fugue
52.22
17%
1
- C4 -
2XQH
4
?
A:
[23-280]
-------------------------------SD
A
K
A
S
G
E
F
------
S
V
A
V
G
-
N
G
A
R
A
T
E
--
K
A
S
T
A
V
G
S
W
----------
A
A
ADGKQ
S
T
A
L
G
V
G
T
Y
A
Y
A
N
----
A
S
T
A
L
G
S
V
A
F
V
D
-
N
T
A
T
Y
G
T
A
A
G
N
R
A
K
V
D
---
K
D
A
TE
G
T
A
L
G
-
A
K
AT
V
T
--------
N
K
N
S
V
A
-----------
L
G
-
A
N
S
V
T
--
T
R
D
N
E
V
Y
I
G
Y
K
T
G
T
E
S
D
K
T
Y
G
-
T
R
-------
V
--
L
--
G
G
L
S
D
G
T
R
N
S
D
A
---
A
T
V
G
Q
L
N
R
K
V
--
G
G
V
--
Y
D
D
V
K
----------------------
A
R
I
T
--
V
E
S
E
K
Q
K
-
K
Y
T
D
Q
K
T
S
E
V
N
E
K
V
E
A
R
----
T
T
V
-----
G
V
D
-
S
DG
K
L
T
--
R
--
A
----------------------------
E
G
A
T
K
T
------
I
A
V
N
D
-
G
----------
L
V
-
A
L
------------------
S
G
R
T
-
D
R
-----
I
-
D
Y
--
A
--
V
G
A
I
D
G
--
R
V
T
R
N
T
Q
S
I
E
K
N
S
K
A
I
A
A
N
T
R
T
----------------------------------------------------------
28
Fugue
47.97
12%
-43
- C6 -
3ZIG
-
?
A:
[49-130]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
V
V
Y
--
I
K
K
I
V
I
S
-
T
H
A
D
L
K
R
--
V
S
D
E
L
K
S
G
----
N
I
V
-----
I
V
E
-
L
--
T
P
L
--
E
--
Q
K---------------------------
P
E
L
L
K
K
------
I
A
E
Q
L
M
T
----------
T
A
S
I
I
------------------
G
G
D
Y
-
A
K
-----
I
-
C
G
SP
L
--
K
V
I
L
T
P
--
P
E
I
K
I
A
K
-------------------------------------------------------------------------
4
PsiBlast_PDB
46.48
22%
22
- C6 -
1VJS
-
AMY_BACLI
A:
[144-272]
-----------------------------------------------------------------------------------------------------------------------
P
G
R
G
S
T
---
Y
S
D
F
K
---
W
H
W
--
Y
H
F
D
G
-
T
D
--
W
D
--------
E
S
R
K
L
N
-----------
R
I
Y
K
F
Q
G
K
--
A
------------
Y
-
D
Y
L
M
Y
A
-
D
I
D
Y
D
H
P
D
V
A
--
A
E
I
K
R
W
G
T
W
Y
A
N
E
-------
L
Q
L
D
G
F
R
L
--
D
A
V
--
K
H
I
K
F
----------------------
S
F
L
R
D
W
V
N
H
V
R
E
K
-
T
G
K
E
M
F
T
--
V
A
E
Y
W
Q
N
---------------
D
-
L
--
G
A
L
--
E
--
N
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
41.00
27%
30
- C6 -
1E3X
3
AMY_BACAM
A:
[129-230]
----------------------------------------------------------------------------------------------------------
E
E
Y
Q
I
K
A
W
T
D
F
R
F
P
G
R
G
N
T
---
Y
S
D
F
K
---
W
H
W
--
Y
H
F
D
G
-
A
D
--
W
D
--------
E
S
R
K
I
S
-----------
R
I
F
K
F
R
G
E
GK
A
W
D
W
E
V
-
S
S
E
N
G
N
Y
-
D
Y
L
M
Y
A
-
D
V
D
Y
D
H
P
D
V
V
A
E
T
--
K
K
W
G
I
W
Y
A
N
E
-------
L
S
L
D
G
F
R
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
40.80
27%
29
- C6 -
1E40
4
AMY_BACAM
A:
[129-230]
----------------------------------------------------------------------------------------------------------
E
E
Y
Q
I
K
A
W
T
D
F
R
F
P
G
R
G
N
T
---
Y
S
D
F
K
---
W
H
W
--
Y
H
F
D
G
-
A
D
--
W
D
--------
E
S
R
K
I
S
-----------
R
I
F
K
F
R
G
E
GK
A
W
D
W
E
V
-
S
S
E
N
G
N
Y
-
D
Y
L
M
Y
A
-
D
V
D
Y
D
H
P
D
V
V
A
E
T
--
K
K
W
G
I
W
Y
A
N
E
-------
L
S
L
D
G
F
R
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
40.13
27%
32
- C6 -
1E3Z
6
AMY_BACAM
A:
[129-230]
----------------------------------------------------------------------------------------------------------
E
E
Y
Q
I
K
A
W
T
D
F
R
F
P
G
R
G
N
T
---
Y
S
D
F
K
---
W
H
W
--
Y
H
F
D
G
-
A
D
--
W
D
--------
E
S
R
K
I
S
-----------
R
I
F
K
F
R
G
E
GK
A
W
D
W
E
V
-
S
S
E
N
G
N
Y
-
D
Y
L
M
Y
A
-
D
V
D
Y
D
H
P
D
V
V
A
E
T
--
K
K
W
G
I
W
Y
A
N
E
-------
L
S
L
D
G
F
R
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
39.13
27%
34
- C6 -
1E43
3
AMY_BACAM
A:
[129-230]
----------------------------------------------------------------------------------------------------------
E
E
Y
Q
I
K
A
W
T
D
F
R
F
P
G
R
G
N
T
---
Y
S
D
F
K
---
W
H
W
--
Y
H
F
D
G
-
A
D
--
W
D
--------
E
S
R
K
I
S
-----------
R
I
F
K
F
R
G
E
GK
A
W
D
W
E
V
-
S
S
E
N
G
N
Y
-
D
Y
L
M
Y
A
-
D
V
D
Y
D
H
P
D
V
V
A
E
T
--
K
K
W
G
I
W
Y
A
N
E
-------
L
S
L
D
G
F
R
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------