@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : PA4388: (2016-02-26 )
MSVEAAKNARELLLKEYRAVLSTHSKKWPGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVGERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYHRVHDFDFWVLQPVQWRFIGGFGAIHWLAAERVPLANPFAGEAERGMVEHMNSDHAAAIAHYVELAGLPAHAAAQLAGIDTEGFHLRIGQGLHWLPFPAACGNPGAVRQALVQLARAERWPTVEPEQG
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------.........10.......-.20........30........-40...-.....50........60.....-.-..--.70.--.....--..--.80........90....--..--.------.100.......110..---.---.-.-..--.------------.-120.......130.......140-...-.....150---.......160.......170.......180.-......-.190.......200..----.....210.......220..---.....230.......240..---------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------MS
V
E
A
A
K
N
A
R
E
L
L
L
K
E
Y
R
-
A
V
L
S
THSKKWPGFPFGSVV
P
Y
-
C
LDAE-G
R
P
L
I
L
I
S
R
I
A
Q
H
T
HN-LQADP-R-C
S
--
M
L-V--GERG
A
--
E
D
--
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A
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T
L
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A
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A
R
Q
L
A
--
E
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--
E
------
V
A
A
A
A
E
R
Y
Y
R
YF--PE---S---A-D-YH--
R
------------
V
-HDF
D
F
W
V
LQP
V
Q
W
R
F
I
GGF
G
A
I
--
H
W
L
-
A
AERVPLA---NPFAG
E
A
E
R
G
M
V
E
HMNS
D
H
A
A
A
I
A
H
Y
V
E
L
-A-GL
P
A
H
A
-
A
A
Q
LAGIDTE
G
F
H
L
RI----GQGLHWLPFPAACGN
P
G
A
V
R
---
Q
A
L
V
Q
L
A
R
AERWPTVEPEQG---------
34
Fugue
99.94
100%
-122
- C2 -
2ARZ
5
?
A:
[5-242]
----------------------------------------------------------------------------------
S
V
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A
A
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L
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-
A
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-
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A
--
E
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--
E
------
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A
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Y
F
--
P
E
---
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---
A
-
D
-
Y
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--
R
------------
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-
H
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F
G
A
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--
H
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-
A
A
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L
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---
N
P
F
A
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E
A
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M
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M
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A
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-
A
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-
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F
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----
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F
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A
A
C
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N
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G
A
V
R
---
Q
A
L
V
Q
L
A
R
A
E
R
W
P
T
V
--------------
1
PsiBlast_PDB
99.75
100%
-122
- C2 -
2ARZ
5
?
A:
[5-242]
----------------------------------------------------------------------------------
S
V
E
A
A
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N
A
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E
L
L
L
K
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-
A
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-
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-
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M
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--
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A
--
E
E
--
E
------
V
A
A
A
A
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F
--
P
E
---
S
---
A
-
D
-
Y
H
--
R
------------
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-
H
D
F
D
F
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F
G
A
I
--
H
W
L
-
A
A
E
R
V
P
L
A
---
N
P
F
A
G
E
A
E
R
G
M
V
E
H
M
N
S
D
H
A
A
A
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A
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-
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G
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P
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-
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F
H
L
R
I
----
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Q
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L
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A
A
C
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N
P
G
A
V
R
---
Q
A
L
V
Q
L
A
R
A
E
R
W
P
T
V
--------------
13
HHSearch
98.95
98%
-122
- C2 -
2ARZ
5
?
A:
[5-242]
----------------------------------------------------------------------------------
S
V
E
A
A
K
N
A
R
E
L
L
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K
E
Y
R
-
A
V
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S
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K
W
P
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V
V
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Y
-
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A
E
-
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-
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--
M
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--
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--
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--
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A
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A
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Q
L
A
--
E
E
--
E
------
V
A
A
A
A
E
R
Y
Y
R
Y
F
--
P
E
---
S
---
A
-
D
-
Y
H
--
R
------------
V
-
H
D
F
D
F
W
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P
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Q
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F
G
A
I
--
H
W
L
-
A
A
E
R
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P
L
A
N
--
P
F
A
G
-
E
A
E
R
G
M
V
E
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M
N
S
D
H
A
A
A
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A
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Y
V
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L
-
A
-
G
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P
A
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A
-
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L
A
G
I
D
T
E
G
F
H
L
R
I
----
G
Q
G
L
H
W
L
P
F
P
A
A
C
G
N
P
G
A
V
R
---
Q
A
L
V
Q
L
A
R
A
E
R
W
P
T
V
--------------
17
HHSearch
57.51
18%
-120
- C2 -
3GAS
8
?
A:
[85-238]
-----------------------------------------------------------------------------------
K
G
V
E
E
E
V
K
A
F
K
E
G
F
D
S
-
V
C
L
A
T
L
H
P
--
N
G
H
V
V
C
S
Y
A
P
L
-
M
S
D
-
G
-
K
Q
Y
Y
I
Y
V
S
E
V
A
E
H
F
A
G
-
L
K
N
N
P
H
N
-
V
E
--
V
M
-
F
--
L
E
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E
S
KA
K
S
--
A
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L
R
Y
K
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N
T
R
F
I
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--
R
G
A
-
E
------
F
D
K
A
F
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K
T
--
G
G
---
A
GG
I
K
-
T
-
I
R
--
A
------------
M
-
Q
D
F
H
L
I
A
L
D
F
K
E
G
R
F
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K
G
F
G
Q
A
--
Y
D
I
-
L
G
D
K
I
A
Y
V
------------------------------------------------------------------------------------------------------------------
18
HHSearch
57.19
28%
-114
* C2 *
1VL7
6
?
A:
[23-157]
-----------------------------------------------------------------------------------------
Y
A
G
F
I
Q
E
F
Q
S
-
A
I
I
S
T
I
S
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--
Q
G
I
P
N
G
S
Y
A
P
F
-
V
I
D
D
A
-
K
N
I
Y
I
Y
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L
A
V
H
T
K
N
-
I
E
A
N
P
-
L
-
V
N
--
V
L
-
F
--
V
D
D
E
A
KT
N
Q
--
I
F
A
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L
S
F
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A
T
L
I
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--
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------
W
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Q
V
V
D
Q
F
Q
E
R
F
--
G
Q
---
I
---
I
E
V
-
L
R
--
G
------------
L
-
A
D
F
R
I
F
Q
L
T
P
K
E
G
R
F
V
I
G
F
G
A
---------------------------------------------------------------------------------------------------------------------------------
39
Fugue
56.76
18%
-88
- C2 -
4N7R
-
GLUBP_ARATH
C:
[48-299]
-------------------------------------------------------------------------------ST
H
K
P
F
P
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--
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G
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D
-
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R
------
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---
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D
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R
E
K
F
--
G
E
---
E
---
V
-
K
-
E
D
--
S
------------
L
-
Y
V
V
A
V
D
R
V
L
Q
M
E
D
F
M
E
D
G
I
W
V
A
--
S
S
D
-
Y
K
N
A
S
P
-----
D
P
L
R
D
I
A
E
D
-
I
V
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Q
I
N
A
N
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F
R
F
C
N
V
Y
V
-
D
L
D
F
V
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M
I
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M
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D
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F
P
M
E
V
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K
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F
N
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M
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A
W
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E
K
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Y
C
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N
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V
K
L
L
K
Q
V
V
16
HHSearch
56.73
19%
-115
- C2 -
3SWJ
2
?
A:
[86-238]
------------------------------------------------------------------------------------
G
V
E
K
E
L
N
E
F
M
L
S
F
N
S
-
V
A
L
A
T
L
N
A
--
N
G
E
V
V
C
S
Y
A
P
F
-
V
S
T
-
Q
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W
G
N
Y
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H
F
N
N
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V
N
P
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N
N
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E
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I
M
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F
--
L
E
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KA
A
S
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V
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L
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--
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G
E
-
R
------
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I
Y
D
E
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E
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Q
T
--
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G
EGG
I
---
K
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I
R
--
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------------
M
-
L
D
F
H
L
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L
E
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G
R
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G
Q
A
--
Y
D
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N
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N
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H
V
------------------------------------------------------------------------------------------------------------------
36
Fugue
56.52
28%
-106
- C2 -
1VL7
6
?
A:
[23-157]
-----------------------------------------------------------------------------------------
Y
A
G
F
I
Q
E
F
Q
S
-
A
I
I
S
T
I
S
E
Q
--
G
I
P
N
G
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Y
A
P
F
-
V
I
D
D
A
-
K
N
I
Y
I
Y
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G
L
A
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H
T
K
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A
N
P
-
L
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N
--
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L
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F
--
V
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A
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K
T
NQ
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F
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S
F
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C
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E
RE
S
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--
K
------
W
N
Q
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F
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G
Q
---
I
---
I
-
E
-
V
L
--
R
------------
G
L
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T
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K
E
G
R
F
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I
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A
---------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
54.74
27%
-99
- C2 -
3TGV
-
?
A:
[2-140]
------------------------------------------------------------------------------------
R
L
E
P
E
I
K
E
F
R
Q
E
R
K
T
-
L
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L
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A
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G
R
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N
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A
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F
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V
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N
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--
E
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-
M
--
I
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E
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EA
K
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--
L
F
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F
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E
---
I
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-
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Q
------------
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-
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M
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R
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Q
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E
Q
G
L
F
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K
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F
G
L
---------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
52.57
13%
-119
- C2 -
2IG6
3
?
A:
[17-148]
-----------------------------------------------------------------------------------
F
Q
G
M
K
R
A
L
E
F
L
K
E
C
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V
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F
Y
L
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N
E
---
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R
V
R
P
F
G
A
-
V
F
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E
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Y
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K
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E
--
I
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G
--
M
N
K
K
----------
G
Q
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E
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A
N
D
D
--
R
R
-----------
E
V
K
E
L
A
L
E
A
V
--
P
S
---
L
---
K
-
N
-
M
Y
SV
D
------------
D
-
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I
F
A
V
L
Y
F
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E
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C
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G
E
N
--
E
T
F
---------------------------------------------------------------------------------------------------------------------------
38
Fugue
51.80
18%
-95
- C2 -
3GAS
8
?
A:
[2-249]
L
N
R
I
I
E
H
M
N
A
HH
V
E
D
M
K
G
L
L
K
K
FGQVHHAEN
V
A
F
K
SVDSQ
G
I
V
I
G
Y
N
N
N
Q
T
L
R
I
E
F
NHEVKDPKD
Y
K
N
A
T
I
E
L
C
Q
S
V
E
K
T
H
D
L
K
G
V
E
E
E
V
K
A
F
K
E
G
F
D
S
-
V
C
L
A
T
L
H
P
--
N
G
H
V
V
C
S
Y
A
P
L
M
S
D
G
---
K
Q
Y
Y
I
Y
V
S
E
V
A
E
H
F
A
G
-
L
K
N
N
P
-
H
-
N
V
--
E
V
M
F
LE
D
E
S
K
A
--
K
S
--
A
I
L
R
K
R
L
R
Y
K
T
N
T
R
F
I
E
R-
G
A
--
E
------
F
D
K
A
F
D
S
F
I
E
K
T
GG
A
G
---
G
---
I
-
K
-
T
I
--
R
------------
A
M
Q
D
F
H
L
I
A
L
D
F
K
E
G
R
F
V
K
G
F
G
Q
A
--
Y
D
I
-
L
G
D
---------------
K
I
A
Y
V
G
D
K
G
N
P
H
N
F
A
H
----------------------------------------------------------------------------------------
10
PsiBlast_CBE
51.55
31%
-84
- C2 -
3TGV
1
?
D:
[10-139]
----------------------------------------------------------------------------------------------
F
R
Q
E
R
-
K
T
L
Q
L
A
T
V
D
A
Q
G
R
P
N
V
S
Y
A
P
F
-
V
Q
N
Q
E
-
G
Y
-
F
V
L
I
S
H
I
A
R
H
A
R
N
-
L
E
V
N
P
-
Q
-
V
S
IM
M
I
-
E
--
D
E
T
E
A
--
K
Q
--
L
F
A
R
K
R
L
T
F
D
A
V
A
S
M
V
E
--
R
D
--
S
ELWCQV
I
A
Q
M
G
E
R
----
F
--
G
E
---
I
---
I
-
D
G
L
S
--
Q
------------
L
-
Q
D
F
M
L
F
R
L
Q
P
E
Q
G
L
F
V
K
G
F
G
----------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_CBE
51.48
31%
-85
- C2 -
3TGV
1
?
C:
[10-139]
----------------------------------------------------------------------------------------------
F
R
Q
E
R
-
K
T
L
Q
L
A
T
V
D
A
Q
G
R
P
N
V
S
Y
A
P
F
-
V
Q
N
Q
E
-
G
Y
-
F
V
L
I
S
H
I
A
R
H
A
R
N
-
L
E
V
N
P
-
Q
-
V
S
IM
M
I
-
E
--
D
E
T
E
A
--
K
Q
--
L
F
A
R
K
R
L
T
F
D
A
V
A
S
M
V
E
--
R
D
--
S
ELWCQV
I
A
Q
M
G
E
R
----
F
--
G
E
---
I
---
I
-
D
G
L
S
--
Q
------------
L
-
Q
D
F
M
L
F
R
L
Q
P
E
Q
G
L
F
V
K
G
F
G
----------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_CBE
51.44
31%
-83
- C2 -
3TGV
2
?
B:
[10-139]
----------------------------------------------------------------------------------------------
F
R
Q
E
R
-
K
T
L
Q
L
A
T
V
D
A
Q
G
R
P
N
V
S
Y
A
P
F
-
V
Q
N
Q
E
-
G
Y
-
F
V
L
I
S
H
I
A
R
H
A
R
N
-
L
E
V
N
P
-
Q
-
V
S
IM
M
I
-
E
--
D
E
T
E
A
--
K
Q
--
L
F
A
R
K
R
L
T
F
D
A
V
A
S
M
V
E
--
R
D
--
S
ELWCQV
I
A
Q
M
G
E
R
----
F
--
G
E
---
I
---
I
-
D
G
L
S
--
Q
------------
L
-
Q
D
F
M
L
F
R
L
Q
P
E
Q
G
L
F
V
K
G
F
G
----------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
51.19
27%
-93
- C2 -
1VL7
6
?
A:
[26-157]
---------------------------------------------------------------------------------------------
F
I
Q
E
F
Q
S
A
I
I
S
T
I
S
E
Q
--
G
I
P
N
G
S
Y
A
P
F
-
V
I
D
D
A
-
K
N
I
Y
I
Y
V
S
G
L
A
V
H
T
K
N
-
I
E
A
N
P
-
L
-
V
N
--
V
L
-
F
--
V
D
D
E
A
--
K
T
--
N
Q
I
F
A
R
-------
R
R
L
S
--
F
D
--
C
------
T
A
T
L
I
E
R
E
S
Q
K
W
--
N
Q
---
V
---
V
-
D
-
Q
F
--
Q
E
R
FG
Q
I
I
E
V
L
R
G
L
-
A
D
F
R
I
F
Q
L
T
P
K
E
G
R
F
V
I
G
F
G
A
---------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
50.83
31%
-83
- C2 -
3TGV
-
?
A:
[10-139]
----------------------------------------------------------------------------------------------
F
R
Q
E
R
-
K
T
L
Q
L
A
T
V
D
A
Q
G
R
P
N
V
S
Y
A
P
F
-
V
Q
N
Q
E
-
G
Y
-
F
V
L
I
S
H
I
A
R
H
A
R
N
-
L
E
V
N
P
-
Q
-
V
S
I
M
M
I
-
E
--
D
E
T
E
A
--
K
Q
--
L
F
A
R
K
R
L
T
F
D
A
V
A
S
M
V
E
--
R
D
--
S
E
L
W
C
Q
V
I
A
Q
M
G
E
R
----
F
--
G
E
---
I
---
I
-
D
G
L
S
--
Q
------------
L
-
Q
D
F
M
L
F
R
L
Q
P
E
Q
G
L
F
V
K
G
F
G
----------------------------------------------------------------------------------------------------------------------------------
35
Fugue
50.54
22%
-31
- C2 -
3DNH
-
?
A:
[4-254]
--------------------------------------------------------------------------VAPPVIT
P
R
F
E
A
V
R
V
A
R
D
V
L
H
T
S
R
T
-
A
A
L
A
T
L
D
P
V
-
S
G
Y
P
Y
T
T
A
T
N
I
-
G
I
E
P
D
-
G
T
P
F
F
F
A
A
G
L
T
L
H
A
R
N
M
E
-
T
D
A
-
R
-
I
S
--
V
T
-
L
--
A
P
F
G
K
--
G
D
--
A
L
T
L
P
R
L
T
L
V
G
R
A
D
R
I
G
--
P
D
--
E
------
V
P
L
A
I
A
R
Y
I
A
R
Y
--
P
K
---
A
---
K
-
L
-
Y
L
--
S
------------
L
-
P
D
T
R
L
Y
R
L
R
T
E
G
V
Q
I
N
G
S
N
I
T
P
--
A
D
L
-
R
T
D
L
S
G
A
E
---
E
L
M
--
A
A
A
E
S
E
A
T
R
L
N
A
I
K
G
E
A
S
R
L
A
V
L
A
-
G
---
A
K
T
G
-
R
W
K
I
T
S
I
D
P
D
G
I
D
L
A
S
----
A
S
D
L
A
R
L
W
F
A
E
R
V
E
T
L
K
Q
F
E
---
K
A
L
A
Q
L
L
K
---------------------
14
HHSearch
50.45
22%
-31
- C2 -
3DNH
-
?
A:
[24-254]
-----------------------------------------------------------------------------------
F
E
A
V
R
V
A
R
D
V
L
H
T
S
R
T
-
A
A
L
A
T
L
D
P
V
-
S
G
Y
P
Y
T
T
A
T
N
I
-
G
I
E
P
D
-
G
T
P
F
F
F
A
A
G
L
T
L
H
A
R
N
-
M
E
T
D
A
-
R
-
I
S
--
V
T
-
L
--
A
P
F
G
K
--
G
D
--
A
L
T
L
P
R
L
T
L
V
G
R
A
D
R
I
G
--
P
D
--
E
------
V
P
L
A
I
A
R
Y
I
A
R
Y
--
P
K
---
A
---
K
-
L
-
Y
L
--
S
------------
L
-
P
D
T
R
L
Y
R
L
R
T
E
G
V
Q
I
N
G
-------
S
N
I
-
T
P
A
D
L
R
T
D
LSG
A
E
E
L
M
A
A
A
E
S
E
A
T
R
L
N
A
I
K
G
E
A
S
R
L
A
--
V
-
L
A
G
A
K
-
T
G
-
R
W
K
I
T
S
I
D
P
D
G
I
D
L
A
S
----
A
S
D
L
A
R
L
W
F
A
E
R
V
E
T
L
K
Q
F
E
---
K
A
L
A
Q
L
L
K
---------------------
30
HHSearch
49.46
14%
-110
- C2 -
2ASF
2
Y2074_MYCTU
A:
[11-135]
--------------------------------------------------------------------------------------
S
D
D
A
L
A
F
L
S
E
R
H
L
-
A
M
L
T
T
L
R
A
--
D
N
S
P
H
V
V
A
V
G
F
-
T
F
D
P
K
T
H
I
A
R
V
I
T
T
G
G
S
Q
K
A
V
N
-
A
D
R
S
G
-
L
-
A
V
--
L
S
-
Q
--
V
D
G
-----------
A
R
W
L
S
L
E
G
R
A
A
V
N
S
--
D
I
D
-
A
------
V
R
D
A
E
L
R
Y
A
Q
R
Y
--
R
T
---
P
---
R
-------
P
------------
N
-
P
R
R
V
V
I
E
V
Q
I
E
R
V
L
G
S
A
D
L
L
D
---------------------------------------------------------------------------------------------------------------------------------
42
Fugue
49.03
11%
-96
- C2 -
2IAB
1
?
A:
[3-155]
---------------------------------------------------------------------------TTPPAR
T
A
K
Q
R
I
Q
D
T
L
N
R
L
E
L
D
V
D
-
A
W
V
S
T
A
G
A
D
-
G
G
A
P
Y
L
V
P
L
S
Y
-
L
W
D
-
G
-
E
T
F
L
V
A
T
P
A
A
S
P
T
G
R
N
-
L
S
E
T
G
-
R
-
V
R
--
L
G
-
I
--
G
P
T
R
-----------
D
L
V
L
V
E
G
T
A
L
P
L
E
--
P
A
--
G
------
L
P
D
G
V
G
D
T
F
A
E
K
--
T
G
---
F
---
D
-
P
-
R
R
--
L
------------
T
-
T
S
Y
L
Y
F
R
I
S
P
R
R
V
Q
A
W
R
E
A
N
E
L
SG
R
E
L
M
R
D
G
E
W
L
V
T
---
D
--------------------------------------------------------------------------------------------------------------