@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Wbm0608: (2015-12-03 )
MSDDITSVSDQNFKSEVADYKGFVLVDFWAEWCRPCKNLMPRVEQLAKDKKGKIKICKFNIDGGAEVLSKYGIQSIPTLIIFQDGKEIARKIGTINDLSSWVDDEIS

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

BME_A_2(2I4A)
?
[Raw transfer]




MPD_A_11(2TRX)
THIO_ECOLI
[Raw transfer]




GOL_A_4(3APS)
DJC10_MOUSE
[Raw transfer]




117 HHSearch 93.0043%-141 * C1 *2I4A 1.9 ?
7 PsiBlast_PDB 92.8942%-137 - C1 -2I4A - ? -
119 HHSearch 88.9938%-132 - C1 -2O8V - THIO_ECOLI -
128 HHSearch 87.5842%-137 - C1 -2YJ7 - ? -
132 HHSearch 85.9240%-137 - C1 -1DBY - TRXM_CHLRE -
44 PsiBlast_CBE 84.1142%-145 - C1 -2H6Z - THIO_ECOLI -
50 PsiBlast_CBE 82.9341%-147 - C1 -2H70 - THIO_ECOLI -
121 HHSearch 82.3341%-142 - C1 -1OAZ - THIO_ECO57 (first) -
35 PsiBlast_CBE 82.1842%-143 - C1 -1T8E - THIO_ECOLI -
39 PsiBlast_CBE 82.1442%-140 - C1 -2EIR - THIO_ECOLI -
27 PsiBlast_CBE 82.1243%-133 - C1 -2FCH - THIO_ECOLI -
52 PsiBlast_CBE 82.0942%-139 - C1 -1THO - THIO_ECOLI -
45 PsiBlast_CBE 81.9442%-133 - C1 -2H6Z - THIO_ECOLI -
3 PsiBlast_PDB 81.7843%-130 - C1 -2FCH - THIO_ECOLI -
71 PsiBlast_CBE 81.6144%-146 - C1 -2YJ7 - ? -
11 PsiBlast_PDB 81.5542%-141 - C1 -2TRX - THIO_ECOLI -
118 HHSearch 81.4428%-139 - C1 -3VFI - ? -
4 PsiBlast_PDB 81.4443%-130 - C1 -2H73 - THIO_ECOLI -
26 PsiBlast_CBE 81.3943%-142 - C1 -2FCH - THIO_ECOLI -
40 PsiBlast_CBE 81.3742%-140 - C1 -2EIR - THIO_ECOLI -
137 Fugue 80.7938%-148 - C1 -2TRX 3.0 THIO_ECOLI