@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1254: (2016-03-22 )
MTKFAQKTIYQVYPKSFYDTTGDGTGDIPGITAKLDYLQKLGIEMIWLNPFYPSPQNDNGYDIADYTAVDPLFGTMDDVTTLIKEAKKRNIGIMIDLVLNHTSTEHPWFKKALAGDPFYRDFYYFRPAKADGSPPTNWVSKFGGNAWEKLPDSSEYYLHLYDVTQADLDWANPNVREALFAVVNFWIDKGVEGFRLDVLNVIAKPKFLEDDFEGDGRRFYTDGPGIHAYLKELHERTFGDKPIITVGEMSSTDIDNCIRYSNPDEKELSMVFHFHHLKVDYPDGEKWRLADVNFENLKSIFHTWQVAMSDENGWDALFWNNHDQPRALGRFASDKPEHYYHSATLLGATIHFMRGTPFVYMGEEIGMMNPKFPTIDDYVDVETLNHFDILQKNGLSEQEVMEIIKERSRDNSRTPMQWDDSQNAGFTTGTPWLKVADNANEINVQTALSNKTSIFYFYQKLIALRKEHPVIQTGDYTPYLTEEDSIIAYKRSNETTSLLSIHHFGSEKKKIQLPTEFLNAEVLLSNYERQRISSELELAPYETLTLIQ

Atome Classification :

(55 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

SUC_A_4(4HPH)
?
[Raw transfer]



SUC_B_4(2PWE)
?
[Raw transfer]



SUC_A_3(2PWE)
?
[Raw transfer]



SUC_A_4(4H8U)
?
[Raw transfer]



TEU_B_6(4H8V)
?
[Raw transfer]



TEU_A_4(4H8V)
?
[Raw transfer]



GLC_A_2(3AXI)
MALX3_YEAST
[Raw transfer]



GLC_A_4(4H7V)
?
[Raw transfer]



ISL_A_4(4HA1)
?
[Raw transfer]



GLC_A_2(3A4A)
MALX3_YEAST
[Raw transfer]



GLC_B_6(4H7V)
?
[Raw transfer]



TEU_B_6(4H8U)
?
[Raw transfer]



SUGAR_A_2(2ZID)
DEXB_STRMU
[Raw transfer]
-
NOJ_A_5(2PWD)
?
[Raw transfer]



GLC_A_4(4HP5)
?
[Raw transfer]



NOJ_B_6(2PWD)
?
[Raw transfer]



CTS_B_6(2PWG)
?
[Raw transfer]



NOJ_A_11(3GBE)
?
[Raw transfer]



GLC_A_4(4HOZ)
?
[Raw transfer]



CTS_A_5(2PWG)
?
[Raw transfer]



TRS_B_6(4GO8)
?
[Raw transfer]



GOL_B_8(4GI9)
?
[Raw transfer]



GOL_B_12(4GIA)
?
[Raw transfer]



GOL_B_15(4GI8)
?
[Raw transfer]



TRS_B_6(1ZJA)
?
[Raw transfer]



TRS_A_5(1ZJB)
?
[Raw transfer]



TRS_B_6(1ZJB)
?
[Raw transfer]



TRS_A_4(4GO8)
?
[Raw transfer]



BGC_A_2(4WLC)
?
[Raw transfer]



GLC_B_6(4HA1)
?
[Raw transfer]



GOL_A_3(4GIN)
?
[Raw transfer]



TRS_A_2(4M8U)
O16G1_BACSU
[Raw transfer]



TRS_A_2(4MAZ)
O16G1_BACSU
[Raw transfer]



GOL_A_3(4H2C)
?
[Raw transfer]



GLO_B_7(4M56)
O16G1_BACSU
[Raw transfer]



GOL_A_3(4HOW)
?
[Raw transfer]



TRS_A_2(4MB1)
O16G1_BACSU
[Raw transfer]



TRS_A_5(2ZIC)
DEXB_STRMU
[Raw transfer]



TRS_B_6(4GO9)
?
[Raw transfer]



TRS_A_4(4GO9)
?
[Raw transfer]



TRS_A_2(4HOX)
?
[Raw transfer]



TRS_A_5(1ZJA)
?
[Raw transfer]



GOL_A_7(4H2C)
?
[Raw transfer]



GLC_A_4(4GI6)
?
[Raw transfer]



GLC_A_3(3AXH)
MALX3_YEAST
[Raw transfer]



GOL_A_14(3UCQ)
?
[Raw transfer]



EDO_A_4(3GBD)
?
[Raw transfer]



EDO_A_2(3GBD)
?
[Raw transfer]



TRS_A_4(4GI9)
?
[Raw transfer]



TRS_B_9(4GI6)
?
[Raw transfer]



TRS_A_11(4GI8)
?
[Raw transfer]



TRS_A_4(4GIA)
?
[Raw transfer]
1 PsiBlast_PDB 96.1943% -80 - C1 -1UOK - O16G_BACCE -
70 HHSearch 93.1244% -76 - C1 -1UOK - O16G_BACCE -
6 PsiBlast_PDB 92.8138% -80 - C1 -4MB1 4.0 O16G1_BACSU
21 PsiBlast_CBE 92.0938% -78 - C1 -4M56 2.7 O16G1_BACSU
7 PsiBlast_PDB 92.0838% -79 - C1 -4MAZ 4.0 O16G1_BACSU
8 PsiBlast_PDB 91.1437% -78 - C1 -4M8U 3.1 O16G1_BACSU
3 PsiBlast_PDB 89.5442% -76 - C1 -4WLC 4.6 ?
9 PsiBlast_PDB 88.7640% -70 - C1 -4HOW 4.2 ?
12 PsiBlast_PDB 88.5939% -72 - C1 -4HP5 4.8 ?
4 PsiBlast_PDB 88.4042% -77 - C1 -4XB3 - ? -
10 PsiBlast_PDB 88.3140% -70 - C1 -4HOX 4.2 ?
13 PsiBlast_PDB 88.2739% -71 - C1 -4HOZ 3.9 ?
2 PsiBlast_PDB 87.7742% -75 - C1 -2ZIC 3.3 DEXB_STRMU
5 PsiBlast_PDB 87.5142% -75 - C1 -2ZID 4.9 DEXB_STRMU
11 PsiBlast_PDB 87.1139% -69 - C1 -4HPH 3.4 ?
42 PsiBlast_CBE 86.0039% -75 - C1 -4H2C 3.9 ?
25 PsiBlast_CBE 85.8239% -73 - C1 -1ZJA 4.0 ?
43 PsiBlast_CBE 85.5139% -71 - C1 -2PWF - ? -
22 PsiBlast_CBE 85.4539% -71 - C1 -4H8V 2.8 ?
26 PsiBlast_CBE 85.3739% -71 - C1 -2PWH - ? -
30 PsiBlast_CBE 85.3439% -73 - C1 -4GIA 2.9 ?
20 PsiBlast_PDB 85.3039% -70 - C1 -4GO8 4.1 ?
29 PsiBlast_CBE 85.1939% -73 - C1 -4GIN 2.9 ?
23 PsiBlast_CBE 85.1439% -71 - C1 -2PWD 5.0 ?
53 PsiBlast_CBE 85.0339% -72 - C1 -4H7V 4.2 ?
24 PsiBlast_CBE 85.0239% -72 - C1 -1ZJB 3.9 ?
35 PsiBlast_CBE 85.0039% -72 - C1 -4GI8 2.3 ?
14 PsiBlast_PDB 84.9239% -72 - C1 -1ZJA 3.7 ?
31 PsiBlast_CBE 84.8539% -72 - C1 -4GIA 2.7 ?
17 PsiBlast_PDB 84.8439% -72 - C1 -4H8V 4.3 ?
33 PsiBlast_CBE 84.6339% -72 - C1 -4GI9 2.3 ?
16 PsiBlast_PDB 84.6139% -70 - C1 -2PWD 5.0 ?
18 PsiBlast_PDB 84.5639% -72 - C1 -2PWG 4.1 ?
15 PsiBlast_PDB 84.3639% -72 - C1 -1ZJB 4.0 ?
27 PsiBlast_CBE 84.0839% -71 - C1 -2PWG 2.9 ?
37 PsiBlast_CBE 83.9139% -73 - C1 -4GI6 2.1 ?
56 PsiBlast_CBE 83.8638% -73 - C1 -3GBD 3.8 ?
51 PsiBlast_CBE 83.8639% -72 - C1 -4H8U 3.9 ?
39 PsiBlast_CBE 83.8339% -70 - C1 -2PWE 3.8 ?
32 PsiBlast_CBE 83.8239% -73 - C1 -4GI9 2.9 ?
54 PsiBlast_CBE 83.7339% -69 - C1 -4H7V 4.5 ?
41 PsiBlast_CBE 83.7139% -71 - C1 -4GO9 4.4 ?
36 PsiBlast_CBE 83.4839% -71 - C1 -4GI6 3.1 ?
38 PsiBlast_CBE 83.4739% -71 - C1 -2PWE 3.2 ?
50 PsiBlast_CBE 83.2839% -73 - C1 -4HA1 3.1 ?
49 PsiBlast_CBE 83.2439% -72 - C1 -4HA1 4.3 ?
34 PsiBlast_CBE 83.2339% -72 - C1 -4GI8 3.0 ?
28 PsiBlast_CBE 83.1639% -70 - C1 -4GO8 4.2 ?
40 PsiBlast_CBE 83.1239% -71 - C1 -4GO9 4.4 ?
55 PsiBlast_CBE 82.1138% -70 * C1 *3GBE 3.5 ?
52 PsiBlast_CBE 81.4939% -72 - C1 -4H8U 3.7 ?
60 PsiBlast_CBE 81.1333% -70 - C1 -3AXI 4.6 MALX3_YEAST
58 PsiBlast_CBE 80.2133% -70 - C1 -3A4A 4.9 MALX3_YEAST
61 PsiBlast_CBE 79.6333% -72 - C1 -3AXH 2.6 MALX3_YEAST
63 PsiBlast_CBE 42.3634% -77 - C1 -3UCQ 2.9 ?