@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1774: (2016-03-28 )
LDKKFLLTNSTIGIIGGGQLGRMLALAAKAMGYRIIVLDPTADCPAAQVSDEQIIADYDDKVALRELSEKADVVTYEFENIDYDALKMTQNLVSVPQGSELLSITQDRILEKAYLESANINIAPYAVIVEQDEIENEIKSIGYPAVLKTAQGGYDGKGQVVIHDARDIETAARLLRYGSCVLEAWIPFEKEISVVVARNLDGQIETFPVAENVHVNNILHTTMVPADVAADVYEEAEEIARKLAEVLQLCGVLAVEMFVTKSGAIYVNELAPRPHNSGHFTIEACSISQFTQHIRAIVGLPLVKPELLKPAVMINILGQHVDAVNKQMVNYPHWFVHYYGKKEAKINRKMGHVTVLADEPKAVIQDLEETQIWK

Atome Classification :

(30 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_B_6(3V4S)
?
[Raw transfer]



ADP_A_3(3ETJ)
PURK_ECOLI
[Raw transfer]



ADP_A_3(3V4S)
?
[Raw transfer]



ANP_A_2(4MA5)
?
[Raw transfer]



ADP_A_3(3QFF)
?
[Raw transfer]



ATP_B_6(3ETH)
PURK_ECOLI
[Raw transfer]



ATP_A_3(3ETH)
PURK_ECOLI
[Raw transfer]



ATP_B_12(4DLK)
?
[Raw transfer]



A12_A_3(4MAM)
?
[Raw transfer]



ATP_A_3(3ETH)
PURK_ECOLI
[Raw transfer]



ADP_B_4(3QFF)
?
[Raw transfer]



ADP_A_3(3R5H)
?
[Raw transfer]



ADP_B_8(3ETJ)
PURK_ECOLI
[Raw transfer]



ADP_B_6(3R5H)
?
[Raw transfer]



ADP_A_4(3ORQ)
?
[Raw transfer]



ADP_A_4(3ORQ)
?
[Raw transfer]



AMP_A_3(3AW8)
?
[Raw transfer]



AMP_A_3(3AW8)
?
[Raw transfer]



AMP_B_5(3AW8)
?
[Raw transfer]



AMP_A_2(4MA0)
?
[Raw transfer]



ATP_A_7(4DLK)
?
[Raw transfer]



ATP_A_8(4DLK)
?
[Raw transfer]
25 PsiBlast_CBE 99.5952%-114 - C2 -3Q2O - ? -
4 PsiBlast_PDB 98.5552%-115 - C2 -3QFF 7.0 ?
1 PsiBlast_PDB 98.5352%-111 - C2 -4DLK 4.3 ?
21 PsiBlast_CBE 98.4052%-111 - C2 -4DLK 7.7 ?
24 PsiBlast_CBE 98.3552%-113 - C2 -3QFF 5.9 ?
76 HHSearch 98.2652%-116 - C2 -3Q2O - ? -
3 PsiBlast_PDB 98.1752%-115 - C2 -3Q2O - ? -
2 PsiBlast_PDB 98.1552%-110 - C2 -3V4S 7.9 ?
23 PsiBlast_CBE 97.8852%-113 - C2 -3R5H 6.2 ?
5 PsiBlast_PDB 97.7852%-112 - C2 -3R5H 7.2 ?
22 PsiBlast_CBE 97.4452%-111 - C2 -3V4S 7.9 ?
77 HHSearch 89.5944% -99 - C2 -3ORQ 4.8 ?
8 PsiBlast_PDB 86.2441% -99 - C2 -4E4T - ? -
6 PsiBlast_PDB 85.0543%-101 - C2 -3ORQ 4.8 ?
26 PsiBlast_CBE 85.0141%-102 - C2 -4E4T - ? -
81 HHSearch 84.6142%-102 - C2 -3AX6 - ? -
78 HHSearch 81.5835%-104 * C2 *3AW8 4.6 ?
79 HHSearch 80.6432% -93 - C2 -3K5I - ? -
32 PsiBlast_CBE 79.1933%-102 - C2 -3K5H - ? -
30 PsiBlast_CBE 79.0933%-103 - C2 -3K5H - ? -
15 PsiBlast_PDB 78.7734% -98 - C2 -4MAM 7.1 ?
13 PsiBlast_PDB 78.0834% -99 - C2 -4MA0 5.5 ?
14 PsiBlast_PDB 77.1234% -99 - C2 -4MA5 5.5 ?
27 PsiBlast_CBE 76.9734% -94 - C2 -3AW8 5.1 ?
10 PsiBlast_PDB 76.2634% -96 - C2 -3AW8 4.6 ?
34 PsiBlast_CBE 75.7233%-103 - C2 -3ETH 7.7 PURK_ECOLI
20 PsiBlast_PDB 75.6633%-101 - C2 -3ETJ 7.0 PURK_ECOLI
19 PsiBlast_PDB 75.4133%-102 - C2 -3ETH 7.3 PURK_ECOLI
84 HHSearch 74.5333% -98 - C2 -3ETH 7.3 PURK_ECOLI
33 PsiBlast_CBE 73.9933%-103 - C2 -3ETJ 6.3 PURK_ECOLI