@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Wbm0403: (2015-12-01 )
MNFKSVVLCILDGWGNGIGDSKYNAISNANPPCWQYISSNYPRCSLSACGTDVGLPDGQIGNSEVGHMNICSGRVVMQSLQRIDREIKTIENNKNLRSFISDLKDKNGVCHIMGLVSDGGVHSHQKHISTLANKISQHEIKVVIHAFLDGRDTLPNSGKKCVQEFEENIKGNDIRIATVSGRYYAMDRDNRWERTIETYEAIAFARATCHNNVMSLIDNNYQNNITDEFIRPTVIGDYKGIELKDGVLLANFRADRMIQLASILLGKTGYTEVAKFSSILSMMKYKEDLQIPCLFPPAFFTNTLGEIIADNKLRQLRIAETEKYAHVTFFFNCGKEEPFSNEERILIPSPKVETYDLQPEMSAFELTEKLVGKIRSQEFTLIVANYANPDMVGHTGNMEAAKKAVLAVDDCLAKVLNTVKEINDAVLIVTADHGNVECMFDEKNNTPHTAHTLNKVPFIIYPNSCNNLKLKDGRLSDIAPTILQLLGIKKPDEMTGSSLIV

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

2PG_A_4(1O98)
GPMI_GEOSE
[Raw transfer]




2PG_A_3(1O99)
GPMI_GEOSE
[Raw transfer]




3PG_A_4(1EJJ)
GPMI_GEOSE
[Raw transfer]




2PG_A_4(1O98)
GPMI_GEOSE
[Raw transfer]




2PG_A_4(1EQJ)
GPMI_GEOSE
[Raw transfer]




3PG_A_4(1EJJ)
GPMI_GEOSE
[Raw transfer]




3PG_B_5(3IGY)
?
[Raw transfer]




2PG_A_4(4QAX)
?
[Raw transfer]




2PG_A_2(4NWX)
?
[Raw transfer]




3PG_A_4(4NWJ)
?
[Raw transfer]




42 Fugue 95.5843% -85 - C2 -1EJJ 6.4 GPMI_GEOSE
9 PsiBlast_PDB 95.2842% -91 - C2 -4QAX 3.2 ?
22 HHSearch 95.0443% -85 - C2 -1O98 6.2 GPMI_GEOSE
3 PsiBlast_PDB 94.9843% -88 - C2 -1O98 6.2 GPMI_GEOSE
6 PsiBlast_PDB 94.9542% -91 - C2 -4MY4 - ? -
7 PsiBlast_PDB 94.8842% -91 - C2 -4NWJ 4.1 ?
5 PsiBlast_PDB 94.8743% -93 - C2 -2IFY - GPMI_BACAN -
8 PsiBlast_PDB 94.6442% -92 - C2 -4NWX 4.1 ?
2 PsiBlast_PDB 94.6043% -87 - C2 -1EQJ 5.7 GPMI_GEOSE
1 PsiBlast_PDB 94.3843% -88 - C2 -1EJJ 6.4 GPMI_GEOSE
4 PsiBlast_PDB 94.2743% -89 - C2 -1O99 5.9 GPMI_GEOSE
12 PsiBlast_PDB 88.0730% -84 - C2 -3IGZ - ? -
11 PsiBlast_PDB 87.8830% -85 - C2 -3IGY 6.2 ?
23 HHSearch 87.1631% -82 * C2 *3IGZ - ? -
10 PsiBlast_PDB 86.5231% -89 - C2 -3NVL - ? -
21 PsiBlast_CBE 85.2431% -90 - C2 -3NVL - ? -
25 HHSearch 44.4026% -58 - C2 -3OT9 - DEOB_BACCR -
29 HHSearch 43.7924% -58 - C2 -3M7V - DEOB_STRMU -
28 HHSearch 41.6118% -46 - C2 -3B5Q - ? -
44 Fugue 41.4212% -43 - C2 -2ZKT - APGM_PYRHO -