@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA1556: (2016-03-27 )
MQQHSSKTAYVYSDKLLQYRFHDQHPFNQMRLKLTTELLLNANLLSPEQIVQPRIATGDELMLIHKYDYVEAIKHASHGIISEDEAKKYGLNDEENGQFKHMHRHSATIVGGALTLADLIMSGKVLNGCHLGGGLHHAQPGRASGFCIYNDIAITAQYIAKEYNQRVLIIDTDAHHGDGTQWSFYADNHVTTYSIHETGKFLFPGSGHYTERGEDIGYGHTVNVPLEPYTEDASFLECFKLTVEPVVKSFKPDIILSVNGVDIHYRDPLTHLNCTLHSLYEIPYFVKYLADSYTNGKVIMFGGGGYNIWRVVPRAWSHVFLSLIDQPIQSGYLPLEWINKWKHYSSELLPKRWEDRLNDYTYVPRTKEISEKNKKLALHIASWYESTRQ

Atome Classification :

(37 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

B3N_A_5(1T67)
HDAC8_HUMAN
[Raw transfer]




NHB_A_6(1W22)
HDAC8_HUMAN
[Raw transfer]




B3N_A_2(4QA4)
HDAC8_HUMAN
[Raw transfer]




SHH_A_3(1T69)
HDAC8_HUMAN
[Raw transfer]




TSN_B_6(1C3R)
?
[Raw transfer]




9F4_C_10(4CBT)

[Raw transfer]




9F4_A_4(4CBT)
HDAC4_HUMAN
[Raw transfer]




9F4_B_7(4CBT)
HDAC4_HUMAN
[Raw transfer]




GOL_A_7(4QA3)
HDAC8_HUMAN
[Raw transfer]




HA3_A_6(2VQV)
HDAC4_HUMAN
[Raw transfer]




SHH_A_10(4LXZ)
HDAC2_HUMAN
[Raw transfer]




TSN_A_3(4QA3)
HDAC8_HUMAN
[Raw transfer]




SHH_A_3(1C3S)
?
[Raw transfer]




TSN_A_5(1C3R)
?
[Raw transfer]




TFG_B_12(2VQQ)

[Raw transfer]




TFG_B_12(2VQO)

[Raw transfer]




LLX_A_7(3MAX)
HDAC2_HUMAN
[Raw transfer]




TFG_A_7(2VQQ)
HDAC4_HUMAN
[Raw transfer]




HA3_B_13(2VQV)

[Raw transfer]




AGE_A_8(3F07)
HDAC8_HUMAN
[Raw transfer]




HA3_A_4(2VQM)

[Raw transfer]




TFG_A_7(2VQO)
HDAC4_HUMAN
[Raw transfer]




1DI_A_8(3SFH)
HDAC8_HUMAN
[Raw transfer]




TFG_A_8(2VQJ)

[Raw transfer]




0DI_A_2(3SFF)
HDAC8_HUMAN
[Raw transfer]




20Y_A_10(4LY1)
HDAC2_HUMAN
[Raw transfer]




NHB_B_10(1W22)
HDAC8_HUMAN
[Raw transfer]




TSN_B_12(4QA3)
HDAC8_HUMAN
[Raw transfer]




2 PsiBlast_PDB 95.8028% -74 - C9 -4A69 - HDAC3_HUMAN -
52 Fugue 95.4626% -86 - C9 -1C3P - ? -
56 Fugue 95.1724% -81 - C9 -4QA5 - HDAC8_HUMAN -
44 HHSearch 92.7826% -81 - C9 -1C3P - ? -
1 PsiBlast_PDB 92.0431% -90 - C9 -4BKX - HDAC1_HUMAN -
43 HHSearch 87.6125% -82 - C9 -1ZZ1 - HDAH_ALCSD -
42 HHSearch 86.3525% -85 - C9 -2VQM - -
20 PsiBlast_PDB 86.1226% -86 - C9 -3F0R - HDAC8_HUMAN -
12 PsiBlast_PDB 86.0526% -87 - C9 -1T64 - HDAC8_HUMAN -
57 Fugue 85.9323% -75 - C9 -4BZ7 - ? -
10 PsiBlast_PDB 85.8126% -84 - C9 -4QA4 4.0 HDAC8_HUMAN
11 PsiBlast_PDB 85.0426% -90 - C9 -4QA3 4.7 HDAC8_HUMAN
16 PsiBlast_PDB 84.5626% -90 - C9 -4QA1 - HDAC8_HUMAN -
19 PsiBlast_PDB 84.4126% -87 - C9 -3F07 4.7 HDAC8_HUMAN
13 PsiBlast_PDB 84.3426% -91 - C9 -1T67 4.0 HDAC8_HUMAN
14 PsiBlast_PDB 84.2626% -90 - C9 -1T69 3.1 HDAC8_HUMAN
15 PsiBlast_PDB 83.9226% -93 - C9 -1W22 4.5 HDAC8_HUMAN
45 HHSearch 83.3923% -81 * C9 *3MEN - APHA_BURP1 -
17 PsiBlast_PDB 82.7626% -98 - C9 -3SFF 6.8 HDAC8_HUMAN
58 Fugue 82.6722% -70 - C9 -3MEN - APHA_BURP1 -
6 PsiBlast_PDB 81.9330% -77 - C9 -4LXZ 5.5 HDAC2_HUMAN
7 PsiBlast_PDB 81.7630% -77 - C9 -4LY1 5.6 HDAC2_HUMAN
8 PsiBlast_PDB 81.5430% -77 - C9 -3MAX 6.3 HDAC2_HUMAN
21 PsiBlast_CBE 81.3531% -72 - C9 -1C3R 5.7 ?
5 PsiBlast_PDB 80.8831% -71 - C9 -1C3S 4.6 ?
4 PsiBlast_PDB 80.8331% -73 - C9 -1C3R 5.8 ?
36 PsiBlast_CBE 66.2032%-101 - C9 -4CBT 6.8 HDAC4_HUMAN
35 PsiBlast_CBE 65.9032%-100 - C9 -4CBT 6.6
30 PsiBlast_CBE 65.8832%-104 - C9 -2VQJ 3.6
25 PsiBlast_CBE 65.5933%-106 - C9 -2VQO 4.2 HDAC4_HUMAN
37 PsiBlast_CBE 65.5732%-105 - C9 -4CBT 6.7 HDAC4_HUMAN
24 PsiBlast_CBE 65.5133%-105 - C9 -2VQO 4.1
22 PsiBlast_CBE 65.4733%-103 - C9 -2VQV 4.1
29 PsiBlast_CBE 65.2232%-107 - C9 -2VQM 3.4
23 PsiBlast_CBE 65.0533%-103 - C9 -2VQV 4.2 HDAC4_HUMAN
27 PsiBlast_CBE 64.8532%-107 - C9 -2VQQ 4.7
28 PsiBlast_CBE 64.2332%-105 - C9 -2VQQ 4.7 HDAC4_HUMAN