@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA2342: (2016-04-03 )
MTEKEKMLAEKWYDANFDQDLINERARAKDICFELNHTKPSDTNKRKELIDQLFQTTTDNVSISIPFDTDYGWNVKLGKNVYVNTNCYFMDGGQITIGDNVFIGPNCGFYTATHPLNFYHRNEGYEKAGPIHIGSNTWFGGHVAVLPGVTIGEGSVIGAGSVVTKDIPPHSLAVGNPCKVVRKIDNDLPSETLNDETIK

Atome Classification :

(32 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GOL_F_14(4EGG)
ATRF2_STAAC
[Raw transfer]




GOL_E_12(4EGG)
ATRF2_STAAC
[Raw transfer]




COA_B_8(3V4E)
ATRF2_STAAC
[Raw transfer]




COA_A_6(3V4E)
ATRF2_STAAC
[Raw transfer]




COA_B_9(3V4E)
ATRF2_STAAC
[Raw transfer]




ACO_A_3(4ISX)
?
[Raw transfer]




ACO_E_5(1KRR)
THGA_ECOLI
[Raw transfer]




COA_F_6(1KRU)
THGA_ECOLI
[Raw transfer]




ACO_F_6(1KRR)
THGA_ECOLI
[Raw transfer]




COA_H_8(1KRV)
THGA_ECOLI
[Raw transfer]




COA_E_5(1KRU)
THGA_ECOLI
[Raw transfer]




COA_D_4(1KRU)
THGA_ECOLI
[Raw transfer]




GOL_A_8(4EGG)
ATRF2_STAAC
[Raw transfer]




GOL_C_10(4EGG)
ATRF2_STAAC
[Raw transfer]




GOL_A_9(4EGG)
ATRF2_STAAC
[Raw transfer]




COA_I_9(1KRV)
THGA_ECOLI
[Raw transfer]




ACO_D_4(1KRR)
THGA_ECOLI
[Raw transfer]




ACO_D_4(1KRR)
THGA_ECOLI
[Raw transfer]




COA_G_7(1KRV)
THGA_ECOLI
[Raw transfer]




COA_E_5(1KQA)
THGA_ECOLI
[Raw transfer]




COA_F_6(1KQA)
THGA_ECOLI
[Raw transfer]




GOL_A_4(3SRT)
?
[Raw transfer]




COA_D_4(1KQA)
THGA_ECOLI
[Raw transfer]




GOL_A_4(3SRT)
?
[Raw transfer]




1 PsiBlast_PDB 90.8197%-119 - C2 -3V4E 5.0 ATRF2_STAAC
22 PsiBlast_CBE 90.7497%-116 - C2 -3V4E 4.4 ATRF2_STAAC
24 PsiBlast_CBE 90.6493%-119 - C2 -4EGG Error ATRF2_STAAC
26 PsiBlast_CBE 90.5993%-119 - C2 -4EGG 2.5 ATRF2_STAAC
21 PsiBlast_CBE 90.5797%-118 - C2 -3V4E 4.3 ATRF2_STAAC
4 PsiBlast_PDB 90.2393%-115 - C2 -4EGG 3.1 ATRF2_STAAC
3 PsiBlast_PDB 90.2094%-115 - C2 -4DCL - ATRF2_STAAC -
23 PsiBlast_CBE 90.1993%-119 - C2 -4EGG - ATRF2_STAAC -
27 PsiBlast_CBE 89.6393%-120 - C2 -4EGG 2.6 ATRF2_STAAC
25 PsiBlast_CBE 89.6193%-119 - C2 -4EGG Error ATRF2_STAAC
6 PsiBlast_PDB 71.2746%-108 - C2 -4ISX 5.1 ?
115 HHSearch 70.5447%-106 - C2 -3SRT 1.9 ?
37 PsiBlast_CBE 70.5439%-110 - C2 -1OCX - MAA_ECOLI -
36 PsiBlast_CBE 70.5339%-107 - C2 -1OCX - MAA_ECOLI -
5 PsiBlast_PDB 70.5246%-104 - C2 -3SRT 1.9 ?
13 PsiBlast_PDB 70.2739%-109 - C2 -1OCX - MAA_ECOLI -
114 HHSearch 69.6942%-110 - C2 -2P2O - ? -
116 HHSearch 69.3539%-108 - C2 -1OCX - MAA_ECOLI -
12 PsiBlast_PDB 69.0642%-109 - C2 -2P2O - ? -
35 PsiBlast_CBE 69.0442%-112 - C2 -1KQA 3.6 THGA_ECOLI
33 PsiBlast_CBE 69.0442%-112 - C2 -1KRR 4.6 THGA_ECOLI
30 PsiBlast_CBE 68.8442%-111 - C2 -1KRU 4.1 THGA_ECOLI
29 PsiBlast_CBE 68.7542%-109 - C2 -1KRV 4.5 THGA_ECOLI
34 PsiBlast_CBE 68.6642%-108 - C2 -1KQA 3.7 THGA_ECOLI
32 PsiBlast_CBE 68.1842%-108 - C2 -1KRR 4.4 THGA_ECOLI
31 PsiBlast_CBE 68.1842%-114 - C2 -1KRU 3.9 THGA_ECOLI
10 PsiBlast_PDB 67.9442%-109 - C2 -1KRV 3.7 THGA_ECOLI
9 PsiBlast_PDB 67.7842%-112 - C2 -1KRU 3.8 THGA_ECOLI
118 HHSearch 67.1142%-103 - C2 -1KRR 5.3 THGA_ECOLI
28 PsiBlast_CBE 67.0142%-109 - C2 -1KRV 4.0 THGA_ECOLI
8 PsiBlast_PDB 66.4742%-105 - C2 -1KRR 5.3 THGA_ECOLI
7 PsiBlast_PDB 66.4742%-105 - C2 -1KQA 3.4 THGA_ECOLI