@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0227: (2016-03-13 )
MFKIGNVEIKNQVVVAPMAGISNSAFRLTVKEFGAGLVCCEMISDKGIAYRNAKTLDMLYIDEKEKPLSLQIFGGEKETLVEAAKFVAENTTADIIDINMGCPVNKIIKCEAGAKWLLDPNKVYDMVAAVVDAVDKPVTVKMRIGWDEEHVFAIENALAAERAGAAAVAMHGRTRVQMYEGSANWDVLRDVKRELKIPFMANGDVRTPEDAKRILEHTGADGVMIGRAALGNPWMIYRTVKFLETGELLLEPEPREKMQTAMLHLNRLVELKGENIAVREFRQHAAYYLKGARGSTRAKVAANQATKQSEMEAILNEFVLQYEEKALAKQD

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FMN_A_3(4YCP)
DUSC_ECOLI
[Raw transfer]




FMN_A_3(4BFA)
DUSC_ECOLI
[Raw transfer]




FMN_A_2(3W9Z)
DUSC_ECOLI
[Raw transfer]




FMN_A_5(1VHN)
?
[Raw transfer]




FMN_A_5(1VHN)
?
[Raw transfer]




FMN_A_3(3B0P)
DUSAL_THET8
[Raw transfer]




81 HHSearch 94.9635% -92 - C2 -1VHN 8.5 ?
1 PsiBlast_PDB 91.2937% -95 - C2 -1VHN 8.5 ?
104 Fugue 86.3734% -80 - C2 -1VHN - ? -
106 Fugue 80.8127% -79 - C2 -4BFA - DUSC_ECOLI -
82 HHSearch 78.9225% -94 - C2 -3B0P - DUSAL_THET8 -
105 Fugue 75.9425% -89 - C2 -3B0P - DUSAL_THET8 -
3 PsiBlast_PDB 71.2230% -90 - C2 -4BFA 10.1 DUSC_ECOLI
2 PsiBlast_PDB 70.4730% -90 - C2 -3W9Z 9.9 DUSC_ECOLI
8 PsiBlast_PDB 70.2730% -93 - C2 -3B0U - DUSAL_THET8 -
5 PsiBlast_PDB 69.6930% -86 - C2 -4YCO - DUSC_ECOLI -
10 PsiBlast_PDB 69.6329% -92 - C2 -3B0V - DUSAL_THET8 -
7 PsiBlast_PDB 69.0230%-101 - C2 -3B0P 9.6 DUSAL_THET8
9 PsiBlast_PDB 68.9529% -87 - C2 -4BF9 - DUSC_ECOLI -
6 PsiBlast_PDB 68.3130% -82 - C2 -4YCP 10.3 DUSC_ECOLI
103 HHSearch 65.3320% -98 - C2 -1GTE - DPYD_PIG -
85 HHSearch 64.4920% -94 - C2 -3KRU - ? -
102 HHSearch 63.9020% -83 - C2 -1EP3 - PYRDB_LACLM -
98 HHSearch 63.4520% -91 - C2 -1JUB - PYRDA_LACLM -
86 HHSearch 62.7819% -91 - C2 -3HGJ - ? -
84 HHSearch 61.1021% -89 - C2 -3GR7 - NAMA_GEOKA -