@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0231: (2016-03-13 )
MNVFEPRLSSWLENAGDDDDVVLSSRIRLARNLKDEQFPIYEQKEEIVDNIAEVFDDNFILIKMNQISLLQKALLVEKHLISPYMMNKSEYGAVLLNEEENVSIMLNEEDHLRIQCMTPGLRLFDALEAALQIDGYVEEKLSYAFDKEFGYLTSCVTNIGTGMRASVMVHLPGLVTTKRIKSVIEAIRSLGFVVRGIYGEGSMPASNIFQVSNQVTLGKTEAEIVEDLTQVMEQIIMQERVARTTLKQKFHIALEDRVFRSYGLLMNCRIISMKEAADAISDIRFGVELGFFEHISRQKMNELVLFSQPAFLRREAGRDMDELEEKVIRAKVIREILGDK

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

DAR_A_6(1BG0)
KARG_LIMPO
[Raw transfer]



ARG_A_5(1M15)
KARG_LIMPO
[Raw transfer]



DAR_A_5(4GVZ)
KARG_LIMPO
[Raw transfer]



IOM_A_4(1RL9)
KARG_LIMPO
[Raw transfer]



ARG_A_2(4WOD)
KTRC_SCHMA
[Raw transfer]



ILO_A_4(4GW0)
KARG_LIMPO
[Raw transfer]



CIR_A_4(4GVY)
KARG_LIMPO
[Raw transfer]
21 HHSearch 95.1726% -98 - C6 -1M15 - KARG_LIMPO -
12 PsiBlast_PDB 95.0027% -89 - C6 -2J1Q - KARG_TRYCR -
7 PsiBlast_PDB 94.8128%-103 - C6 -4GW2 - KARG_LIMPO -
8 PsiBlast_PDB 94.6828%-106 - C6 -1RL9 2.5 KARG_LIMPO
2 PsiBlast_PDB 94.6528%-106 - C6 -1M15 4.1 KARG_LIMPO
1 PsiBlast_PDB 94.3428%-102 - C6 -1BG0 4.1 KARG_LIMPO
5 PsiBlast_PDB 94.1828%-100 - C6 -4GVZ 3.9 KARG_LIMPO
9 PsiBlast_PDB 93.8828%-102 - C6 -1P52 - KARG_LIMPO -
6 PsiBlast_PDB 93.8828%-104 - C6 -4GW0 3.5 KARG_LIMPO
4 PsiBlast_PDB 93.8828%-106 - C6 -4GVY 3.1 KARG_LIMPO
11 PsiBlast_PDB 92.9628%-103 - C6 -1SD0 - KARG_LIMPO -
10 PsiBlast_PDB 92.6328% -99 - C6 -1P50 - KARG_LIMPO -
3 PsiBlast_PDB 91.8328%-106 - C6 -3M10 - KARG_LIMPO -
24 HHSearch 91.0525% -89 - C6 -3L2D - ? -
15 PsiBlast_PDB 90.6425% -89 - C6 -1QK1 - KCRU_HUMAN -
25 HHSearch 90.5024% -95 - C6 -1QH4 - KCRB_CHICK -
16 PsiBlast_PDB 86.5924% -80 - C6 -4Z9M - KCRS_HUMAN -
23 HHSearch 85.9123% -89 * C6 *3JU5 - KARG_STIJA -
17 PsiBlast_PDB 84.1825% -95 - C6 -1CRK - KCRS_CHICK -
33 Fugue 77.5820% -57 - C4 -2BMF - ? -
19 PsiBlast_PDB 68.8531% -99 - C6 -4WOD 2.8 KTRC_SCHMA