@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0765: (2016-03-18 )
LVIENRDFIQISTEKIKKEINNQKLVEMYKRCMENTLDTTIKIRDSGLTFILTGDIPAMWLRDSVCQVRPFLIFAKENEEIESMLIGLSKEQVSLVEIDPYANAFNETPNGAGHQADKTEMHPQVWERKYEIDSLCYPIQLAYLIWKITGRTEQFDAAFFKMLQTIFALWEVEQHHETKSPYRFERLDCVPSDTLKRNGLGTETAYTGMLWSGFRPSDDACEYGYLIPSNMFAVVVLGYAKEIIEAFYPSEIETIKQAATLQNDIQLGIEKFGTYNHPTFGEIFAFEVDGLGNQLLMDDANVPSLLSMPIIEYLEKESPIYQNTRKFILSKSNPYYFEGKLAKGIGSPHTPAGYIWPIGLAIQGLTASDKSEKLEILQMLLRTDAGTGLMHESFHPDYPEDFTREWFSWANMMFCELVLDVAGFRMANVLKN

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

YDR_A_8(3QT9)
?
[Raw transfer]



YDR_A_8(3QT9)
?
[Raw transfer]



DMJ_A_10(3QRY)
?
[Raw transfer]



DMJ_B_3(3QRY)
?
[Raw transfer]



DMJ_B_3(3QRY)
?
[Raw transfer]



EDO_A_5(3QSP)
?
[Raw transfer]



EDO_A_9(3ON6)
?
[Raw transfer]



EDO_A_2(3QT3)
?
[Raw transfer]



SUGAR_A_3(3QSP)
?
[Raw transfer]
-
SUGAR_B_8(3QSP)
?
[Raw transfer]
-
EDO_A_3(3P2C)
?
[Raw transfer]



EDO_A_3(3P2C)
?
[Raw transfer]
20 HHSearch 97.9451% -94 - C3 -3QRY 3.6 ?
2 PsiBlast_PDB 97.8652% -92 - C3 -3QT9 6.5 ?
22 HHSearch 97.7151% -91 - C3 -3QT9 6.5 ?
18 PsiBlast_CBE 97.6253% -96 - C3 -3QPF - ? -
1 PsiBlast_PDB 97.5152% -94 - C3 -3QT3 2.4 ?
3 PsiBlast_PDB 96.6153% -96 - C3 -3QPF - ? -
5 PsiBlast_PDB 96.6053% -95 - C3 -3QSP 3.5 ?
16 PsiBlast_CBE 96.5953% -94 - C3 -3QSP 2.7 ?
4 PsiBlast_PDB 96.5353% -96 - C3 -3QRY 3.6 ?
17 PsiBlast_CBE 96.3053% -94 - C3 -3QRY 4.2 ?
19 HHSearch 94.8042% -92 * C3 *3P2C 2.7 ?
8 PsiBlast_PDB 93.6042% -90 - C3 -3P2C 2.7 ?
7 PsiBlast_PDB 93.1243% -93 - C3 -3ON6 3.6 ?
6 PsiBlast_PDB 81.3350% -0 - C3 -2NVP - ? -
21 HHSearch 70.6942% -13 - C3 -2P0V - ? -
9 PsiBlast_PDB 68.2241% -8 - C3 -2P0V - ? -
30 HHSearch 56.3813% -71 - C3 -2OKX - ? -
29 HHSearch 54.3012% -68 - C3 -2JG0 - TREA_ECOLI -
28 HHSearch 52.9813% -72 - C3 -3W7T - YGJK_ECOLI -
23 HHSearch 52.8811% -61 - C3 -2FBA - AMYG_SACFI -