@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1092: (2016-03-21 )
MTNLFQDDSLTLHTDLYQLNMMKAYFDDGLHERRSVFEVFFRDMPFDSGFVVFAGLERIIHYMQNLRFTETDIAYLHDELGFDGPFLEYLRNFKFKGNILAAKEGEFVFKTEPILQVEASLAEAQLIETALLNIVNFQTLIATKAARIRSVIDDETFAEFGTRRAQEMDAAIWGTRAAYIGGCDSTSNVRAGKIFGIPVSGTMAHAMVQAYRDELEAFRSYAKTHFDSIFLVDTYDTLKSGVPNAIKVAKEMGDKINFIGIRLDSGDMAFLSKKARQMLDEAGFTEAKIFASSDLDEHTILSLKAQKAKIDSWGVGTKLITAYDQPALGAVYKMAAIADENDILQDSIKLSSNTEKVSTPGKKKVYRIITNEDGLKAEGDYIALADESLENVDKLTMFHPVHTYIMKTVENFTARELLVPIFQNGELVYDMPSLDEIKAYKEENLALLWDEYKRTVRPEQYPVDLSVKCWKNKMRNIEKVRKSVQLHSPVELDMPF

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NCN_G_7(1YTK)
PNCB_THEAC
[Raw transfer]



DPO_A_12(2F7F)
?
[Raw transfer]



DPO_A_12(2F7F)
?
[Raw transfer]



FMT_A_21(4MZY)
?
[Raw transfer]



TRS_A_10(2I1O)
PNCB_THEAC
[Raw transfer]



PCP_G_7(1YTE)
PNCB_THEAC
[Raw transfer]



MLA_A_16(4MZY)
?
[Raw transfer]



MPD_A_11(2I1O)
PNCB_THEAC
[Raw transfer]



ACY_A_13(2I1O)
PNCB_THEAC
[Raw transfer]
2 PsiBlast_PDB 99.1762% -95 - C5 -4MZY 3.0 ?
41 Fugue 98.8863% -93 - C5 -2F7F 3.3 ?
1 PsiBlast_PDB 98.5462% -93 - C5 -2F7F 3.3 ?
3 PsiBlast_PDB 78.3231% -80 - C5 -4YUB - PNCB_HUMAN -
21 HHSearch 70.6028% -84 - C5 -2I14 - ? -
24 HHSearch 70.0827% -72 * C5 *2I1O - PNCB_THEAC -
42 Fugue 61.6222% -59 - C5 -1YTK - PNCB_THEAC -
4 PsiBlast_PDB 61.5528% -67 - C5 -2I14 - ? -
43 Fugue 60.3018% -59 - C5 -2H3B - NAMPT_MOUSE -
10 PsiBlast_PDB 59.6822% -70 - C5 -1YIR - PNCB2_PSEAE -
22 HHSearch 58.7323% -61 - C5 -1YIR - PNCB2_PSEAE -
26 HHSearch 58.4624% -69 - C5 -3OS4 - PNCB_YERPE -
25 HHSearch 58.2124% -66 - C5 -2IM5 - ? -
27 HHSearch 57.9224% -55 - C5 -1VLP - NPT1_YEAST -
11 PsiBlast_PDB 57.0322% -68 - C5 -3OS4 - PNCB_YERPE -
45 Fugue 56.6719% -53 - C5 -2E5D - NAMPT_HUMAN -
8 PsiBlast_PDB 56.3732% -74 - C5 -2I1O 2.3 PNCB_THEAC
7 PsiBlast_PDB 56.2932% -72 - C5 -1YTK 5.2 PNCB_THEAC
5 PsiBlast_PDB 55.6632% -76 - C5 -1YTD - PNCB_THEAC -
23 HHSearch 55.5322% -61 - C5 -1YBE - PNCB_AGRFC -
6 PsiBlast_PDB 54.8632% -74 - C5 -1YTE 3.3 PNCB_THEAC