@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1272: (2016-03-23 )
MTIQWFPGHMAKARREVTEKLKLVDVIFELVDARIPLSSSNPMLEEIIHQKRRVIILNKADTADEKTTKEWIDYFAEKGLPAVAVNAQEGKGLFKIEQAAEKLMAEKFDRLRSKGMKPRAIRAMILGIPNVGKSTLINRLAKKNIARTGNKPGVTKAQQWIKVGKTLELLDTPGILWPKFEDQEIGYKLALTGAIKDDLLQMEEIAGYGLRFLENHYPDRLQTWLKVETVSEDPIETLAFIAEKRGLLDRYNDPDYSRAAETVVREIRQQKLGRMSFDFPNWEDEVE

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GNP_A_3(1PUJ)
RBGA_BACSU
[Raw transfer]



GNP_A_3(1PUJ)
RBGA_BACSU
[Raw transfer]



GNP_A_3(1PUJ)
RBGA_BACSU
[Raw transfer]



GTP_A_2(3CNN)
RBGA_THEMA
[Raw transfer]



GNP_A_2(3CNL)
RBGA_THEMA
[Raw transfer]



GNP_A_2(3CNL)
RBGA_THEMA
[Raw transfer]



GDP_A_2(3CNO)
RBGA_THEMA
[Raw transfer]



DGI_A_2(3H2Y)
?
[Raw transfer]
113 HHSearch 95.1858%-105 - C12 -1PUJ 7.7 RBGA_BACSU
1 PsiBlast_PDB 95.1858%-105 - C12 -1PUJ 7.7 RBGA_BACSU
104 Fugue 93.6155%-101 - C12 -1PUJ 7.7 RBGA_BACSU
3 PsiBlast_PDB 66.5132% -76 - C12 -3CNN 7.7 RBGA_THEMA
4 PsiBlast_PDB 66.4832% -74 - C12 -3CNO 7.4 RBGA_THEMA
2 PsiBlast_PDB 65.6732% -74 - C12 -3CNL 7.3 RBGA_THEMA
114 HHSearch 65.5534% -69 - C12 -3CNL 7.4 RBGA_THEMA
121 HHSearch 61.0326%-101 - C12 -2RCN - RSGA_SALTY -
117 HHSearch 60.4224% -98 - C12 -2YV5 - RSGA_AQUAE -
9 PsiBlast_PDB 58.6529% -78 - C12 -3EC1 - ? -
116 HHSearch 57.4729% -76 * C12 *3H2Y 7.3 ?
115 HHSearch 56.6828% -63 - C12 -3EC1 - ? -
118 HHSearch 54.8422% -67 - C12 -1U0L - RSGA_THEMA -
7 PsiBlast_PDB 51.7725% -61 - C12 -3H2Y - ? -
120 HHSearch 44.6020% -75 - C12 -1T9H - RSGA_BACSU -
105 Fugue 43.2116% -14 - C12 -3EC1 - ? -
106 Fugue 42.4718% -25 - C6 -1MKY - DER_THEMA -
82 PsiBlast_CBE 41.6133% -53 - C8 -1UDX - OBG_THET8 -
109 Fugue 41.4414% -18 - C3 -2QTH - HFLX_SULSO -
108 Fugue 41.3520% -19 - C13 -1XZP - MNME_THEMA -