@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1556: (2016-03-26 )
MKRKIIVGSRRSKLALTQSNWVINKLKENYPEFDFEIKEIVTKGDRILDVTLSKVGGKGLFVSEVEQALSDEAIDFAVHSMKDVPSSLKEGLIIGAIPKRESPLDCFVFNQVNSLDELPQGSVIGTSSLRRAAQLLKHRPDFVIKPIRGNIDTRLQKLHAENFDAIILAKAGLARMGWLENTTLKLEDIPPEVCLPAVGQGALAIECRESDQQIRDMLTSIHHEETGICVEAERVFLKKLNGGCEIPIAGFATRANEFVQFKGLVGNADGSIILESEQVGANPSEIGNKVAEDLLSEGADTIIKELRNV

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

DPM_A_2(4MLV)
?
[Raw transfer]



DPM_A_2(4MLQ)
?
[Raw transfer]



DPM_B_2(1YPN)
HEM3_ECOLI
[Raw transfer]



DPM_A_2(1GTK)
HEM3_ECOLI
[Raw transfer]



DPM_A_2(1GTK)
HEM3_ECOLI
[Raw transfer]



DPM_A_2(2YPN)
HEM3_ECOLI
[Raw transfer]



DPM_A_2(1AH5)
HEM3_ECOLI
[Raw transfer]



18W_A_2(4HTG)
HEM3_ARATH
[Raw transfer]



DPM_B_4(3ECR)
HEM3_HUMAN
[Raw transfer]



DPM_A_3(3ECR)
HEM3_HUMAN
[Raw transfer]



DPM_A_3(3ECR)
HEM3_HUMAN
[Raw transfer]



DPM_B_4(3EQ1)
HEM3_HUMAN
[Raw transfer]



DPM_A_3(3EQ1)
HEM3_HUMAN
[Raw transfer]



DPM_B_2(1PDA)
HEM3_ECOLI
[Raw transfer]



ACY_C_3(1PDA)
HEM3_ECOLI
[Raw transfer]
2 PsiBlast_PDB 97.6156% -87 - C5 -4MLV 9.0 ?
1 PsiBlast_PDB 96.7056% -87 - C5 -4MLQ 8.8 ?
15 HHSearch 95.9745% -84 - C5 -3ECR 7.8 HEM3_HUMAN
5 PsiBlast_PDB 93.1147% -77 - C5 -1PDA 9.5 HEM3_ECOLI
14 HHSearch 92.7846% -86 - C5 -1GTK 8.7 HEM3_ECOLI
4 PsiBlast_PDB 92.6447% -82 - C5 -1GTK 8.7 HEM3_ECOLI
6 PsiBlast_PDB 92.3847% -81 - C5 -1YPN 7.9 HEM3_ECOLI
7 PsiBlast_PDB 92.0647% -79 - C5 -1AH5 8.0 HEM3_ECOLI
3 PsiBlast_PDB 91.6747% -82 - C5 -2YPN 8.7 HEM3_ECOLI
10 PsiBlast_PDB 89.1742% -74 - C5 -4HTG 9.9 HEM3_ARATH
9 PsiBlast_PDB 86.5946% -89 - C5 -3EQ1 8.3 HEM3_HUMAN
13 PsiBlast_CBE 86.3346% -89 - C5 -3EQ1 8.7 HEM3_HUMAN
8 PsiBlast_PDB 85.4047% -87 - C5 -3ECR 7.8 HEM3_HUMAN
12 PsiBlast_CBE 84.8447% -83 - C5 -3ECR 8.4 HEM3_HUMAN
34 Fugue 78.7249% -80 - C5 -1PDA - ? -
39 Fugue 55.3622% -67 - C4 -4UOX - PAT_ECOLI -
19 HHSearch 44.2714% -48 * C5 *2X26 - SSUA_ECOLI -
26 HHSearch 43.6818% -62 - C5 -3UIF - ? -
36 Fugue 41.3412% -23 - C4 -1F6Y - ACSE_MOOTH -
38 Fugue 41.289% -35 - C5 -2X7P - ? -