@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1988: (2016-03-30 )
VTYKITSLAGDGIGPEIMTSGLQVLEAVAKKYNHTFEIESHPFGGAGIDVAQDPIPSSTLKACQDADAILLGAIGGPKWDNAPKRPEDGLLALRKALGLFANIRPIQVPSSITHLSPLKKEIVENTDFVVVRELTGGLYFGEPKHWDESAAVDSLTYTRAEIERIIEKAFEIAATRNKKVTSVDKANVLASSKLWRKIAEEVASRHPDITLEHLYIDAAAMLMIQRPTTFDVIVTENLFGDILSDEASVITGSLGMLPSASHAENGPSLYEPIHGSAPDIANQNIANPMSMISSVSMMLRQSFSLFKEADAIDAAATRTMQAGFLTADLGGNTTTTDFTNEVLKQIEGGE

Atome Classification :

(49 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAD_B_18(4WUO)
LEU3_THET8
[Raw transfer]




NAD_A_4(4WUO)
LEU3_THET8
[Raw transfer]




NAP_C_3(2D1C)
IDH_THET8
[Raw transfer]




NAP_C_3(2D1C)
IDH_THET8
[Raw transfer]




NAP_C_3(2D1C)
IDH_THET8
[Raw transfer]




NAP_D_4(2D1C)
IDH_THET8
[Raw transfer]




NAD_B_3(4XXV)
LEU3_BURTA
[Raw transfer]




NAD_X_2(3FMX)
TTUC_PSEPU
[Raw transfer]




GGG_B_7(3TY3)
LYS12_SCHPO
[Raw transfer]




CIT_E_5(2D1C)
IDH_THET8
[Raw transfer]




GOL_A_10(4WUO)
LEU3_THET8
[Raw transfer]




CIT_F_6(2D1C)
IDH_THET8
[Raw transfer]




GGG_A_3(3TY3)
LYS12_SCHPO
[Raw transfer]




GOL_B_4(4XXV)
LEU3_BURTA
[Raw transfer]




GOL_B_12(3TY4)
LYS12_SCHPO
[Raw transfer]




IPM_B_6(1A05)
LEU3_ACIFR
[Raw transfer]




IPM_A_5(1A05)
LEU3_ACIFR
[Raw transfer]




IPM_A_3(2Y41)
LEU3_THET8
[Raw transfer]




IPM_A_5(1A05)
LEU3_ACIFR
[Raw transfer]




IPM_A_2(3VL3)
LEU3_SHEON
[Raw transfer]




IPM_A_2(3VL4)
LEU3_SHEON
[Raw transfer]




IPM_A_2(3VL2)
LEU3_SHEON
[Raw transfer]




IPM_B_5(2Y41)
LEU3_THET8
[Raw transfer]




IPM_A_2(3VKZ)
LEU3_SHEON
[Raw transfer]




IPM_A_2(3VL7)
LEU3_SHEON
[Raw transfer]




GOL_A_6(3TY4)
LYS12_SCHPO
[Raw transfer]




IPM_A_2(3VL6)
LEU3_SHEON
[Raw transfer]




IPM_A_2(3VMJ)
LEU3_SHEON
[Raw transfer]




GOL_A_6(3TY4)
LYS12_SCHPO
[Raw transfer]




IPM_A_3(3VMK)
?
[Raw transfer]




IPM_B_6(3VMK)
?
[Raw transfer]




IPM_A_2(3VML)
LEU3_SHEON
[Raw transfer]




IPM_A_3(3VMK)
?
[Raw transfer]




DEI_A_3(2ZTW)
LEU3_THET8
[Raw transfer]




2PE_A_5(2Y3Z)
LEU3_THET8
[Raw transfer]




2PE_A_4(2Y3Z)
LEU3_THET8
[Raw transfer]




EOH_B_19(4WUO)
LEU3_THET8
[Raw transfer]




109 HHSearch 96.9059% -99 - C6 -3U1H - ? -
1 PsiBlast_PDB 96.6860% -98 - C6 -3U1H - ? -
107 HHSearch 93.9452% -89 - C6 -1VLC - LEU3_THEMA -
5 PsiBlast_PDB 93.9151% -88 - C6 -1VLC - LEU3_THEMA -
103 HHSearch 93.4748% -88 - C6 -1A05 3.7 LEU3_ACIFR
55 PsiBlast_CBE 92.9247% -87 - C6 -3R8W - LEU32_ARATH -
54 PsiBlast_CBE 92.7547% -88 - C6 -3R8W - LEU32_ARATH -
21 PsiBlast_CBE 92.5354% -84 - C6 -1V5B - LEU3_BACCO -
123 Fugue 92.3154% -90 - C6 -2AYQ - LEU3_BACCO -
27 PsiBlast_CBE 92.2948% -82 - C6 -4F7I - LEU3_THET8 -
39 PsiBlast_CBE 92.1548% -83 - C6 -4WUO 7.9 LEU3_THET8
50 PsiBlast_CBE 92.0847% -82 - C6 -1CNZ - LEU3_SALTY -
28 PsiBlast_CBE 92.0748% -82 - C6 -4F7I - LEU3_THET8 -
29 PsiBlast_CBE 92.0548% -82 - C6 -4F7I - LEU3_THET8 -
23 PsiBlast_CBE 92.0454% -84 - C6 -1V5B - LEU3_BACCO -
51 PsiBlast_CBE 91.9847% -81 - C6 -1CNZ - LEU3_SALTY -
41 PsiBlast_CBE 91.9348% -90 - C6 -1A05 3.7 LEU3_ACIFR
108 HHSearch 91.8847% -86 * C6 *3R8W - LEU32_ARATH -
52 PsiBlast_CBE 91.8847% -86 - C6 -3R8W - LEU32_ARATH -
26 PsiBlast_CBE 91.8448% -81 - C6 -4F7I - LEU3_THET8 -
40 PsiBlast_CBE 91.7848% -88 - C6 -1A05 3.7 LEU3_ACIFR
105 HHSearch 91.4748% -89 - C6 -3VMK 3.4 ?
17 PsiBlast_PDB 91.4148% -84 - C6 -2Y3Z 2.6 LEU3_THET8
36 PsiBlast_CBE 91.3949% -97 - C6 -3VMK 3.1 ?
19 PsiBlast_PDB 91.3948% -83 - C6 -2Y41 4.3 LEU3_THET8
104 HHSearch 91.1648% -84 - C6 -2Y3Z 2.6 LEU3_THET8
38 PsiBlast_CBE 90.9548% -81 - C6 -4WUO 8.1 LEU3_THET8
44 PsiBlast_CBE 90.6149% -96 - C6 -3VL7 3.0 LEU3_SHEON
37 PsiBlast_CBE 90.6049% -94 - C6 -3VMK 3.4 ?
45 PsiBlast_CBE 90.5749% -94 - C6 -3VL6 3.6 LEU3_SHEON
47 PsiBlast_CBE 90.5649% -89 - C6 -3VL3 3.8 LEU3_SHEON
48 PsiBlast_CBE 90.5149% -92 - C6 -3VL2 3.3 LEU3_SHEON
49 PsiBlast_CBE 90.3949% -92 - C6 -3VKZ 3.3 LEU3_SHEON
46 PsiBlast_CBE 90.1249% -92 - C6 -3VL4 3.4 LEU3_SHEON
43 PsiBlast_CBE 90.0249% -96 - C6 -3VMJ 3.2 LEU3_SHEON
33 PsiBlast_CBE 90.0248% -83 - C6 -2Y41 4.2 LEU3_THET8
42 PsiBlast_CBE 89.9549% -95 - C6 -3VML 3.4 LEU3_SHEON
16 PsiBlast_PDB 89.8048% -82 - C6 -2ZTW 3.3 LEU3_THET8
63 PsiBlast_CBE 87.8146% -91 - C6 -4XXV 8.1 LEU3_BURTA
67 PsiBlast_CBE 83.9434% -80 - C6 -3FMX 6.6 TTUC_PSEPU
115 HHSearch 78.5234% -75 - C6 -2D1C 6.7 IDH_THET8
124 Fugue 78.1532% -74 - C6 -2D1C 6.7 IDH_THET8
92 PsiBlast_CBE 77.3934% -77 - C6 -2D1C 6.9 IDH_THET8
93 PsiBlast_CBE 77.0934% -76 - C6 -2D1C 6.7 IDH_THET8
113 HHSearch 75.8032% -84 - C6 -3TY4 3.0 LYS12_SCHPO
94 PsiBlast_CBE 68.9431% -77 - C6 -3TY4 2.3 LYS12_SCHPO
95 PsiBlast_CBE 68.7831% -73 - C6 -3TY4 3.0 LYS12_SCHPO
97 PsiBlast_CBE 68.5231% -74 - C6 -3TY3 3.0 LYS12_SCHPO
96 PsiBlast_CBE 67.7131% -74 - C6 -3TY3 2.2 LYS12_SCHPO