@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2537: (2016-04-04 )
LAKIKVMSIFGTRPEAIKMAPLVLALEKEPETFESTVVITAQHREMLDQVLEIFDIKPDIDLDIMKKGQTLAEITSRVMNGINEVIAAENPDIVLVHGDTTTSFAAGLATFYQQKMLGHVEAGLRTWNKYSPFPEEMNRQLTGVMADIHFSPTKQAKENLLAEGKDPATIFVTGNTAIDALKTTVQKDYHHPILENLGDNRLILMTAHRRENLGEPMQGMFEAVREIVESREDTELVYPMHLNPAVREKAMAILGGHERIHLIEPLDAIDFHNFLRKSYLVFTDSGGVQEEAPGMGVPVLVLRDTTERPEGIEAGTLKLIGTNKENLIKEALDLLDNKESHDKMAQAANPYGDGFAANRILAAIKSHFEETDRPEDFIV

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

UD1_B_5(4FKZ)
MNAA_BACSU
[Raw transfer]




UD1_A_3(3BEO)
?
[Raw transfer]




UD1_B_5(3BEO)
?
[Raw transfer]




UD1_A_3(4FKZ)
MNAA_BACSU
[Raw transfer]




UD1_A_2(4NES)
WECB_METJA
[Raw transfer]




GOL_A_4(1V4V)
?
[Raw transfer]




TRS_A_2(4NEQ)
WECB_METJA
[Raw transfer]




1 PsiBlast_PDB 99.9599% -98 - C2 -3OT5 - ? -
23 HHSearch 95.2894% -95 - C2 -3OT5 - ? -
20 PsiBlast_CBE 87.4767% -86 - C2 -3BEO 9.2 ?
2 PsiBlast_PDB 87.4067% -86 - C2 -3BEO 9.2 ?
3 PsiBlast_PDB 86.2362% -79 - C2 -4FKZ 10.0 MNAA_BACSU
21 PsiBlast_CBE 86.1262% -80 - C2 -4FKZ 10.0 MNAA_BACSU
22 PsiBlast_CBE 83.5849% -89 - C2 -3DZC - ? -
7 PsiBlast_PDB 83.1349% -91 - C2 -1VGV - WECB_ECOLI -
6 PsiBlast_PDB 82.7549% -94 - C2 -1F6D - WECB_ECOLI -
5 PsiBlast_PDB 82.3849% -87 - C2 -3DZC - ? -
25 HHSearch 80.8947% -88 - C2 -3DZC - ? -
8 PsiBlast_PDB 79.2841% -90 - C2 -1V4V 2.5 ?
26 HHSearch 77.4646% -85 - C2 -1VGV - WECB_ECOLI -
24 HHSearch 75.1339% -86 - C2 -1V4V - ? -
9 PsiBlast_PDB 69.4336% -79 - C2 -4NEQ 3.5 WECB_METJA
10 PsiBlast_PDB 68.1236% -69 - C2 -4NES 4.9 WECB_METJA
11 PsiBlast_PDB 65.7827% -73 - C2 -4HWG - ? -
27 HHSearch 52.9817% -66 - C2 -3C48 - MSHA_CORGL -
47 Fugue 52.6216% -60 - C2 -2X6Q - TRET_PYRHO -
41 HHSearch 52.3815% -60 - C2 -2X6Q - TRET_PYRHO -