@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs0874: (2015-12-03 )
MKIMFVAAEGAPFAKTGGLGDVIGALPKSLSKKGHDVVVVMPYYDMVDQKFGDQIENLMYFYTDVGWRHQYVGVKRLSQDNVTFYFIDNQYYFYRGHVYGDWDDGERFAYFQLAALELMEKINFIPDVLHVHDYHTAMIPFLLKEKYHWIQAYNNIRTVFTIHNIEFQGQFGPEMLGDLFGVGAERYEDGTLRWNNCLNWMKAAILYSDRVTTVSPSYANEIKTPEFGKGLDQIMRMEAGKLSGIVNGIDSDLLNPETDAFLPYHFSKSNLEGKIKNKLALQENLGLPQDKNVPLIGIVSRLTDQKGFDIIASELDNMLQQDIQMVILGTGYHHFEETFSYFASRYPEKLSANITFDLRLAQQIYAASDIFMMPSAFEPCGLSQMMAMRYGSLPLVHEVGGLKDTVVAFNQFDGSGTGFSFNHFSGYWLMQTLKLALEVYNDYPEAWKKLQWQAMSKDFSWDTACVAYEQLYQQLQ

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ADP_A_3(2R4T)
GLGA_ECOLI
[Raw transfer]




ADP_A_3(2R4U)
GLGA_ECOLI
[Raw transfer]




ADP_A_3(2QZS)
GLGA_ECOLI
[Raw transfer]




ADP_A_2(3GUH)
GLGA_ECOLI
[Raw transfer]




ADP_A_3(2QZS)
GLGA_ECOLI
[Raw transfer]




ADP_A_3(3COP)
GLGA_ECOLI
[Raw transfer]




ADP_A_2(3VUF)
SSG1_ORYSJ
[Raw transfer]




ADP_D_4(1RZU)
GLGA1_RHIRD
[Raw transfer]




250_A_4(2R4T)
GLGA_ECOLI
[Raw transfer]




SUGAR_A_2(3CX4)
GLGA_ECOLI
[Raw transfer]

-

250_A_4(2QZS)
GLGA_ECOLI
[Raw transfer]




GOL_A_4(3L01)
?
[Raw transfer]




ADP_C_3(1RZU)
GLGA1_RHIRD
[Raw transfer]




ADP_C_3(1RZU)
GLGA1_RHIRD
[Raw transfer]




ADP_C_3(1RZU)
GLGA1_RHIRD
[Raw transfer]




9 PsiBlast_PDB 96.0933%-111 - C1 -1RZU 3.8 GLGA1_RHIRD
21 PsiBlast_CBE 95.8033%-110 - C1 -1RZU 6.0 GLGA1_RHIRD
26 HHSearch 94.9334%-106 - C1 -2QZS 8.5 GLGA_ECOLI
47 Fugue 94.4834%-105 - C1 -1RZU 3.8 GLGA1_RHIRD
3 PsiBlast_PDB 94.1633%-103 - C1 -2QZS 8.5 GLGA_ECOLI
6 PsiBlast_PDB 93.6533%-104 - C1 -3GUH 8.0 GLGA_ECOLI
11 PsiBlast_PDB 93.5834%-102 - C1 -3VUE - SSG1_ORYSJ -
2 PsiBlast_PDB 93.4633%-102 - C1 -3D1J - GLGA_ECOLI -
31 HHSearch 93.4336%-100 - C1 -3VUE - SSG1_ORYSJ -
28 HHSearch 93.4233%-104 - C1 -1RZU 4.5 GLGA1_RHIRD
4 PsiBlast_PDB 92.9933%-103 - C1 -2R4T 8.8 GLGA_ECOLI
7 PsiBlast_PDB 92.7133%-101 - C1 -3COP 7.0 GLGA_ECOLI
12 PsiBlast_PDB 92.6834%-100 - C1 -3VUF 5.6 SSG1_ORYSJ
5 PsiBlast_PDB 92.4633%-102 - C1 -2R4U 8.4 GLGA_ECOLI
8 PsiBlast_PDB 92.1833%-104 - C1 -3CX4 3.5 GLGA_ECOLI
1 PsiBlast_PDB 89.5936% -98 - C1 -4HLN - ? -
13 PsiBlast_PDB 77.8825% -99 - C1 -3FRO - ? -
14 PsiBlast_PDB 77.4525% -98 - C1 -2BIS - ? -
15 PsiBlast_PDB 76.8425%-101 - C1 -3L01 3.3 ?
33 HHSearch 75.1225% -98 * C1 *3FRO - ? -