@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu34790: (2016-07-29 )
MSEEKIYDVIIIGAGPAGMTAAVYTSRANLSTLMIERGIPGGQMANTEDVENYPGFESILGPELSNKMFEHAKKFGAEYAYGDIKEVIDGKEYKVVKAGSKEYKARAVIIAAGAEYKKIGVPGEKELGGRGVSYCAVCDGAFFKGKELVVVGGGDSAVEEGVYLTRFASKVTIVHRRDKLRAQSILQARAFDNEKVDFLWNKTVKEIHEENGKVGNVTLVDTVTGEESEFKTDGVFIYIGMLPLSKPFENLGITNEEGYIETNDRMETKVEGIFAAGDIREKSLRQIVTATGDGSIAAQSVQHYVEELQETLKTLK

Atome Classification :

(43 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NDP_B_6(4A65)
?
[Raw transfer]




NDP_B_9(4CBQ)
?
[Raw transfer]




NDP_B_6(4A5L)
?
[Raw transfer]




NAP_C_9(3F8R)
?
[Raw transfer]




NAP_B_7(3F8R)
?
[Raw transfer]




NAP_A_6(2A87)
TRXB_MYCTU
[Raw transfer]




NDP_A_3(4CBQ)
?
[Raw transfer]




NAP_A_5(3F8R)
?
[Raw transfer]




NAP_D_11(3F8R)
?
[Raw transfer]




NAP_A_3(1TDF)
TRXB_ECOLI
[Raw transfer]




NAP_B_6(2Q0L)
TRXB_HELPY
[Raw transfer]




NDP_B_6(4UP3)
?
[Raw transfer]




NAP_A_4(2Q0L)
TRXB_HELPY
[Raw transfer]




NAP_B_7(4CCQ)
?
[Raw transfer]




NAP_A_4(2Q0K)
TRXB_HELPY
[Raw transfer]




NDP_A_3(4A5L)
?
[Raw transfer]




NAP_A_4(4CCQ)
?
[Raw transfer]




NDP_A_3(4A65)
?
[Raw transfer]




NDP_A_4(4UP3)
?
[Raw transfer]




NAP_A_4(3D8X)
TRXB1_YEAST
[Raw transfer]




GOL_A_19(4YKG)
AHPF_ECOLI
[Raw transfer]




ACY_B_9(3F8P)
?
[Raw transfer]




FDA_A_2(4JNQ)
?
[Raw transfer]




ACY_B_8(3F8D)
?
[Raw transfer]




CIT_D_14(3ITJ)
TRXB1_YEAST
[Raw transfer]




FAD_A_3(4GCM)
TRXB_STAAW
[Raw transfer]




FAD_A_5(2A87)
TRXB_MYCTU
[Raw transfer]




FAD_B_4(2Q7V)
?
[Raw transfer]




GOL_A_15(4YKF)
AHPF_ECOLI
[Raw transfer]




GOL_A_14(4YKG)
AHPF_ECOLI
[Raw transfer]




FAD_B_7(2A87)
TRXB_MYCTU
[Raw transfer]




CIT_B_9(3ITJ)
TRXB1_YEAST
[Raw transfer]




CIT_A_6(3ITJ)
TRXB1_YEAST
[Raw transfer]




FLC_A_5(2WHD)
?
[Raw transfer]




FLC_B_8(2WHD)
?
[Raw transfer]




1 PsiBlast_PDB 95.9370%-100 - C3 -4GCM - TRXB_STAAW -
69 HHSearch 93.3271% -68 - C3 -4GCM 13.4 TRXB_STAAW
48 PsiBlast_CBE 79.2939% -93 - C3 -3F8P 3.7 ?
3 PsiBlast_PDB 72.9244% -13 - C3 -2A87 7.5 TRXB_MYCTU
71 HHSearch 72.0342% -23 - C3 -4JNQ 6.8 ?
51 PsiBlast_CBE 71.8839% -35 - C3 -3F8D - ? -
77 HHSearch 71.6045% -14 - C3 -2A87 8.5 TRXB_MYCTU
49 PsiBlast_CBE 71.3639% -35 - C3 -3F8P - ? -
72 HHSearch 71.2137% -31 - C3 -3F8D - ? -
47 PsiBlast_CBE 71.0839% -34 - C3 -3F8P - ? -
6 PsiBlast_PDB 70.9238% -8 - C3 -2Q0L 9.5 TRXB_HELPY
43 PsiBlast_CBE 70.6939% -34 - C3 -3F8R 6.5 ?
8 PsiBlast_PDB 70.5242% -23 - C3 -4JNQ - ? -
78 HHSearch 70.5148% 15 - C3 -2Q7V - ? -
22 PsiBlast_CBE 69.8744% -13 - C3 -2A87 10.6 TRXB_MYCTU
21 PsiBlast_CBE 69.4847% 8 - C3 -2Q7V 9.8 ?
46 PsiBlast_CBE 69.2539% -15 - C3 -3F8P - ? -
25 PsiBlast_CBE 69.0938% -8 - C3 -2Q0L 7.9 TRXB_HELPY
5 PsiBlast_PDB 69.0138% -8 - C3 -2Q0K 8.2 TRXB_HELPY
24 PsiBlast_CBE 68.9938% -9 - C3 -3ISH - TRXB_HELPY -
45 PsiBlast_CBE 68.5939% -14 - C3 -3F8R 8.3 ?
44 PsiBlast_CBE 67.2339% -12 - C3 -3F8R 7.8 ?
52 PsiBlast_CBE 64.8139% -11 - C3 -3F8D 3.9 ?
42 PsiBlast_CBE 64.6139% -17 - C3 -3F8R 7.4 ?
20 PsiBlast_PDB 64.2238% -18 - C3 -1TDF 9.1 TRXB_ECOLI
54 PsiBlast_CBE 62.7038% 26 - C3 -2WHD 3.3 ?
55 PsiBlast_CBE 62.0238% 26 - C3 -2WHD 3.8 ?
32 PsiBlast_CBE 61.2737% 32 - C3 -4CBQ 7.7 ?
34 PsiBlast_CBE 60.4437% 36 - C3 -4A5L 7.0 ?
64 PsiBlast_CBE 60.0433% 30 - C3 -4YKG 3.1 AHPF_ECOLI
33 PsiBlast_CBE 59.8637% 35 - C3 -4A65 6.9 ?
31 PsiBlast_CBE 59.5337% 30 - C3 -4CCQ 8.4 ?
40 PsiBlast_CBE 59.0337% 33 - C3 -4UP3 6.9 ?
13 PsiBlast_PDB 58.8837% 32 - C3 -4A65 8.4 ?
14 PsiBlast_PDB 58.6637% 28 - C3 -4CBQ 8.9 ?
41 PsiBlast_CBE 58.5837% 31 - C3 -4UP3 9.5 ?
12 PsiBlast_PDB 58.3637% 28 - C3 -4A5L 8.6 ?
15 PsiBlast_PDB 57.8537% 31 - C3 -4CCQ 8.5 ?
19 PsiBlast_PDB 56.5737% 47 - C3 -3ITJ 3.0 TRXB1_YEAST
58 PsiBlast_CBE 56.1333% 29 - C3 -4YKF 2.0 AHPF_ECOLI
11 PsiBlast_PDB 55.9637% 44 - C3 -3D8X 6.0 TRXB1_YEAST
39 PsiBlast_CBE 54.6237% 46 - C3 -3ITJ 2.8 TRXB1_YEAST
38 PsiBlast_CBE 54.4237% 45 - C3 -3ITJ 3.1 TRXB1_YEAST