@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv2538c: (2016-05-11 )
MTDIGAPVTVQVAVDPPYPVVIGTGLLDELEDLLADRHKVAVVHQPGLAETAEEIRKRLAGKGVDAHRIEIPDAEAGKDLPVVGFIWEVLGRIGIGRKDALVSLGGGAATDVAGFAAATWLRGVSIVHLPTTLLGMVDAAVGGKTGINTDAGKNLVGAFHQPLAVLVDLATLQTLPRDEMICGMAEVVKAGFIADPVILDLIEADPQAALDPAGDVLPELIRRAITVKAEVVAADEKESELREILNYGHTLGHAIERRERYRWRHGAAVSVGLVFAAELARLAGRLDDATAQRHRTILSSLGLPVSYDPDALPQLLEIMAGDKKTRAGVLRFVVLDGLAKPGRMVGPDPGLLVTAYAGVCAP

Atome Classification :

(42 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAD_B_4(3QBD)
AROB_MYCTU
[Raw transfer]




NAD_A_3(3QBD)
AROB_MYCTU
[Raw transfer]




NAD_A_8(1XAG)
AROB_STAAR
[Raw transfer]




NAD_A_3(3OKF)
AROB_VIBCH
[Raw transfer]




NAD_A_3(3OKF)
AROB_VIBCH
[Raw transfer]




NAD_A_3(5EKS)
?
[Raw transfer]




NAD_A_3(5EKS)
?
[Raw transfer]




NAD_A_2(5HVN)
?
[Raw transfer]




NAD_A_2(5HVN)
?
[Raw transfer]




NAD_A_6(1DQS)
ARO1_EMENI
[Raw transfer]




NAD_A_6(1DQS)
ARO1_EMENI
[Raw transfer]




NAD_B_8(1DQS)
ARO1_EMENI
[Raw transfer]




NAD_B_9(1NR5)
ARO1_EMENI
[Raw transfer]




NAD_A_5(1XAH)
AROB_STAAR
[Raw transfer]




NAD_A_8(1NR5)
ARO1_EMENI
[Raw transfer]




NAD_A_5(1SG6)
ARO1_EMENI
[Raw transfer]




NAD_A_19(1NRX)
ARO1_EMENI
[Raw transfer]




NAD_A_7(1NVB)
ARO1_EMENI
[Raw transfer]




NAD_B_6(1SG6)
ARO1_EMENI
[Raw transfer]




NAD_A_5(1SG6)
ARO1_EMENI
[Raw transfer]




NAD_B_20(1NRX)
ARO1_EMENI
[Raw transfer]




ADP_C_13(1NVF)
ARO1_EMENI
[Raw transfer]




ADP_B_12(1NVF)
ARO1_EMENI
[Raw transfer]




ADP_B_7(1NVA)
ARO1_EMENI
[Raw transfer]




ADP_A_11(1NVF)
ARO1_EMENI
[Raw transfer]




ADP_A_6(1NVA)
ARO1_EMENI
[Raw transfer]




CRB_B_11(1NR5)
ARO1_EMENI
[Raw transfer]




CRB_A_5(1XAI)
AROB_STAAR
[Raw transfer]




CRB_A_6(1NVD)
ARO1_EMENI
[Raw transfer]




CRB_B_6(1XAI)
AROB_STAAR
[Raw transfer]




CRB_A_9(1XAG)
AROB_STAAR
[Raw transfer]




CRB_B_9(1NVB)
ARO1_EMENI
[Raw transfer]




CRB_B_7(1NVD)
ARO1_EMENI
[Raw transfer]




2 PsiBlast_PDB 98.74100%-138 - C5 -3QBE - AROB_MYCTU -
39 HHSearch 98.6899%-140 - C5 -3QBE - AROB_MYCTU -
21 PsiBlast_CBE 98.25100%-142 - C5 -3QBD 8.4 AROB_MYCTU
1 PsiBlast_PDB 98.02100%-141 - C5 -3QBD 8.7 AROB_MYCTU
41 HHSearch 75.0139%-109 * C5 *3OKF 8.9 AROB_VIBCH
46 HHSearch 73.5538% -99 - C5 -3ZOK - DHQS_ACTCH -
45 HHSearch 72.4138%-110 - C5 -5EKS 8.3 ?
4 PsiBlast_PDB 71.8441%-106 - C5 -3OKF 8.8 AROB_VIBCH
3 PsiBlast_PDB 70.3840%-100 - C5 -3ZOK - DHQS_ACTCH -
6 PsiBlast_PDB 70.2034%-114 - C5 -5HVN 8.1 ?
23 PsiBlast_CBE 69.6240%-100 - C5 -3ZOK - DHQS_ACTCH -
24 PsiBlast_CBE 69.4840% -98 - C5 -3ZOK - DHQS_ACTCH -
22 PsiBlast_CBE 69.4640%-100 - C5 -3ZOK - DHQS_ACTCH -
47 HHSearch 69.2033%-103 - C5 -1SG6 8.9 ARO1_EMENI
49 HHSearch 68.9933%-109 - C5 -5HVN 7.8 ?
19 PsiBlast_PDB 66.8328% -87 - C5 -2GRU - DOIS_BACCI -
40 HHSearch 66.8026% -94 - C5 -2GRU - DOIS_BACCI -
63 Fugue 65.1537%-101 - C5 -1UJN - ? -
43 HHSearch 64.4327%-104 - C5 -4P53 - VALA_STRHJ -
62 Fugue 63.9132% -92 - C5 -1DQS 9.2 ARO1_EMENI
5 PsiBlast_PDB 62.0242%-104 - C5 -5EKS 7.9 ?
42 HHSearch 61.0730% -98 - C5 -1XAH 6.7 AROB_STAAR
16 PsiBlast_PDB 60.8537% -96 - C5 -1SG6 7.3 ARO1_EMENI
25 PsiBlast_CBE 59.1737%-105 - C5 -1SG6 7.5 ARO1_EMENI
32 PsiBlast_CBE 57.6637%-100 - C5 -1NVA 3.7 ARO1_EMENI
9 PsiBlast_PDB 57.6337%-100 - C5 -1NRX 5.1 ARO1_EMENI
11 PsiBlast_PDB 57.3437%-102 - C5 -1NVA 4.0 ARO1_EMENI
34 PsiBlast_CBE 57.1737%-100 - C5 -1NRX 5.6 ARO1_EMENI
7 PsiBlast_PDB 56.5037% -81 - C5 -1DQS 8.3 ARO1_EMENI
8 PsiBlast_PDB 56.3937% -81 - C5 -1NR5 8.6 ARO1_EMENI
26 PsiBlast_CBE 55.9837% -82 - C5 -1NVF 4.1 ARO1_EMENI
35 PsiBlast_CBE 55.7137% -81 - C5 -1NR5 8.3 ARO1_EMENI
27 PsiBlast_CBE 55.7137% -82 - C5 -1NVF 3.9 ARO1_EMENI
15 PsiBlast_PDB 55.4437% -80 - C5 -1NVF 3.9 ARO1_EMENI
36 PsiBlast_CBE 55.2037% -79 - C5 -1DQS 8.4 ARO1_EMENI
13 PsiBlast_PDB 55.1937% -82 - C5 -1NVD 5.3 ARO1_EMENI
12 PsiBlast_PDB 55.1737% -77 - C5 -1NVB 6.4 ARO1_EMENI
31 PsiBlast_CBE 55.1037% -78 - C5 -1NVB 4.7 ARO1_EMENI
30 PsiBlast_CBE 54.7137% -81 - C5 -1NVD 5.2 ARO1_EMENI
37 PsiBlast_CBE 54.0135% -76 - C5 -1XAI 4.4 AROB_STAAR
18 PsiBlast_PDB 53.8335% -76 - C5 -1XAI 4.5 AROB_STAAR
17 PsiBlast_PDB 52.8535% -78 - C5 -1XAG 7.8 AROB_STAAR