@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA3118: (2016-02-14 )
MSKQILVLPGDGIGPEIMAEAVKVLELANDRFQLGFELAEDVIGGAAIDKHGVPLADQTLQRARQADAVLLGAVGGPKWDRIERDIRPERGLLKIRSQLGLFANLRPAILYPQLAAASSLKPEVVAGLDILIVRELTGGIYFGQPREQRVLENGERQAYDTLPYSESEIRRIARVGFDMARVRNNRLCSVDKANVLASSQLWREVVEEVAKDYPDVELSHMYVDNAAMQLVRAPKQFDVMVTDNMFGDILSDEASMLTGSIGMLPSASLDANNKGMYEPCHGSAPDIAGQGIANPLATILSVSMMLRYSFSQATAADAIEQAVSKVLDQGLRTGDIWSEGCRKVGTREMGDAVVAALKNL

Atome Classification :

(41 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAD_B_18(4WUO)
LEU3_THET8
[Raw transfer]




NAD_A_4(4WUO)
LEU3_THET8
[Raw transfer]




NAD_B_3(4XXV)
LEU3_BURTA
[Raw transfer]




NAP_C_3(2D1C)
IDH_THET8
[Raw transfer]




NAP_C_3(2D1C)
IDH_THET8
[Raw transfer]




NAD_X_2(3FMX)
TTUC_PSEPU
[Raw transfer]




NAP_D_4(2D1C)
IDH_THET8
[Raw transfer]




CIT_E_5(2D1C)
IDH_THET8
[Raw transfer]




NAP_C_3(2D1C)
IDH_THET8
[Raw transfer]




CIT_F_6(2D1C)
IDH_THET8
[Raw transfer]




GGG_A_3(3TY3)
LYS12_SCHPO
[Raw transfer]




GOL_B_4(4XXV)
LEU3_BURTA
[Raw transfer]




GOL_A_10(4WUO)
LEU3_THET8
[Raw transfer]




IPM_B_6(1A05)
LEU3_ACIFR
[Raw transfer]




IPM_A_5(1A05)
LEU3_ACIFR
[Raw transfer]




IPM_A_5(1A05)
LEU3_ACIFR
[Raw transfer]




IPM_A_5(1A05)
LEU3_ACIFR
[Raw transfer]




IPM_A_3(2Y41)
LEU3_THET8
[Raw transfer]




GOL_B_12(3TY4)
LYS12_SCHPO
[Raw transfer]




IPM_A_2(3VL7)
LEU3_SHEON
[Raw transfer]




IPM_A_2(3VL2)
LEU3_SHEON
[Raw transfer]




IPM_A_2(3VL3)
LEU3_SHEON
[Raw transfer]




IPM_A_2(3VKZ)
LEU3_SHEON
[Raw transfer]




IPM_A_2(3VMJ)
LEU3_SHEON
[Raw transfer]




IPM_A_2(3VL6)
LEU3_SHEON
[Raw transfer]




IPM_A_2(3VL4)
LEU3_SHEON
[Raw transfer]




NAD_A_2(1HEX)
LEU3_THET8
[Raw transfer]




GOL_A_6(3TY4)
LYS12_SCHPO
[Raw transfer]




IPM_A_3(3VMK)
?
[Raw transfer]




IPM_B_6(3VMK)
?
[Raw transfer]




IPM_B_5(2Y41)
LEU3_THET8
[Raw transfer]




IPM_A_3(3VMK)
?
[Raw transfer]




GOL_A_6(3TY4)
LYS12_SCHPO
[Raw transfer]




IPM_A_2(3VML)
LEU3_SHEON
[Raw transfer]




DEI_A_3(2ZTW)
LEU3_THET8
[Raw transfer]




2PE_A_5(2Y3Z)
LEU3_THET8
[Raw transfer]




2PE_A_5(2Y3Z)
LEU3_THET8
[Raw transfer]




NAD_A_2(2ZTW)
LEU3_THET8
[Raw transfer]




2PE_A_4(2Y3Z)
LEU3_THET8
[Raw transfer]




EOH_B_19(4WUO)
LEU3_THET8
[Raw transfer]




21 PsiBlast_CBE 97.9065%-103 - C8 -4XXV 7.8 LEU3_BURTA
22 PsiBlast_CBE 97.6965%-101 - C8 -4IWH - LEU3_BURTA -
2 PsiBlast_PDB 97.3965%-101 - C8 -4XXV - LEU3_BURTA -
1 PsiBlast_PDB 96.7965%-100 - C8 -4IWH - LEU3_BURTA -
89 Fugue 94.0961%-102 - C8 -1A05 3.7 LEU3_ACIFR
99 HHSearch 93.8762% -98 - C8 -1A05 3.7 LEU3_ACIFR
5 PsiBlast_PDB 93.8461%-101 - C8 -1A05 3.7 LEU3_ACIFR
102 HHSearch 93.8363%-105 - C8 -3U1H - ? -
3 PsiBlast_PDB 93.3563%-105 - C8 -3U1H - ? -
26 PsiBlast_CBE 93.2361% -98 - C8 -1A05 3.8 LEU3_ACIFR
12 PsiBlast_PDB 92.1256%-102 - C8 -3VMK 3.3 ?
25 PsiBlast_CBE 91.7359%-101 - C8 -3R8W - LEU32_ARATH -
19 PsiBlast_PDB 91.5755%-105 - C8 -3VMJ 3.2 LEU3_SHEON
17 PsiBlast_PDB 91.5255%-101 - C8 -3VL6 3.2 LEU3_SHEON
13 PsiBlast_PDB 91.4655%-103 - C8 -3VKZ 3.3 LEU3_SHEON
11 PsiBlast_PDB 91.4156%-105 - C8 -3VML 3.3 LEU3_SHEON
33 PsiBlast_CBE 91.3756%-103 - C8 -3VMK 3.0 ?
18 PsiBlast_PDB 91.3255%-102 - C8 -3VL7 3.0 LEU3_SHEON
104 HHSearch 91.2459% -95 * C8 *3R8W - LEU32_ARATH -
32 PsiBlast_CBE 91.1055%-101 - C8 -1CNZ - LEU3_SALTY -
105 HHSearch 90.7755% -97 - C8 -3VMK 3.3 ?
15 PsiBlast_PDB 90.3355%-100 - C8 -3VL3 3.2 LEU3_SHEON
14 PsiBlast_PDB 90.3055%-103 - C8 -3VL2 3.3 LEU3_SHEON
16 PsiBlast_PDB 89.9055% -99 - C8 -3VL4 3.4 LEU3_SHEON
103 HHSearch 85.8452% -96 - C8 -2Y3Z 3.1 LEU3_THET8
57 PsiBlast_CBE 83.3453% -96 - C8 -4WUO 7.6 LEU3_THET8
53 PsiBlast_CBE 82.9054% -98 - C8 -2Y3Z 2.7 LEU3_THET8
55 PsiBlast_CBE 82.6954%-100 - C8 -1HEX 7.0 LEU3_THET8
49 PsiBlast_CBE 82.1254% -94 - C8 -2Y41 4.3 LEU3_THET8
50 PsiBlast_CBE 81.6854% -95 - C8 -2Y41 4.2 LEU3_THET8
56 PsiBlast_CBE 81.4453% -95 - C8 -4WUO 7.9 LEU3_THET8
54 PsiBlast_CBE 81.3254% -97 - C8 -2ZTW 4.7 LEU3_THET8
110 HHSearch 72.8335% -95 - C8 -3TY4 2.9 LYS12_SCHPO
75 PsiBlast_CBE 71.1533% -90 - C8 -3FMX 6.6 TTUC_PSEPU
78 PsiBlast_CBE 70.2934% -90 - C8 -3TY4 3.5 LYS12_SCHPO
76 PsiBlast_CBE 69.8135% -88 - C8 -2D1C 6.9 IDH_THET8
80 PsiBlast_CBE 68.9434% -83 - C8 -3TY3 2.5 LYS12_SCHPO
90 Fugue 68.8634% -82 - C8 -2D1C 6.8 IDH_THET8
79 PsiBlast_CBE 68.6834% -85 - C8 -3TY4 2.9 LYS12_SCHPO
113 HHSearch 68.6135% -83 - C8 -2D1C 6.8 IDH_THET8
77 PsiBlast_CBE 68.3735% -85 - C8 -2D1C 6.6 IDH_THET8