@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA3163: (2016-02-14 )
MNGAVPMLAIDGPSGAGKGTVAGLLARRLGWNLLDSGALYRLLAFAAVNHGVDLTNEEALKVLAAHLDVQFVAADGSHGQRIILEGEEVTDVIRTEQVGAGASQVAALPAVRDALLQRQRAFREAPGLVADGRDMGTVVFPDAPLKIFLTASAEERARRRYLQLKAKGADVDQSALLEEIRERDERDSQRAVAPLKPADDAILLDSTEMSIEAVVETIIRHCERQGWDV

Atome Classification :

(30 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

CDP_D_4(2CMK)
KCY_ECOLI
[Raw transfer]




C_H_8(1KDO)
KCY_ECOLI
[Raw transfer]




C_E_5(1KDP)
KCY_ECOLI
[Raw transfer]




CAR_F_6(1KDR)
KCY_ECOLI
[Raw transfer]




C_I_9(1KDO)
KCY_ECOLI
[Raw transfer]




CAR_G_7(1KDR)
KCY_ECOLI
[Raw transfer]




CDP_A_2(3AKD)
KCY_THET8
[Raw transfer]




C5P_H_8(2H92)
KCY_STAAW
[Raw transfer]




C5P_G_7(2H92)
KCY_STAAW
[Raw transfer]




C5P_G_7(2H92)
KCY_STAAW
[Raw transfer]




DOC_F_6(1KDT)
KCY_ECOLI
[Raw transfer]




C_F_6(1KDP)
KCY_ECOLI
[Raw transfer]




DOC_G_7(1KDT)
KCY_ECOLI
[Raw transfer]




C5P_I_9(2H92)
KCY_STAAW
[Raw transfer]




DC_C_3(2FEO)
KCY_ECOLI
[Raw transfer]




C5P_A_2(3AKE)
KCY_THET8
[Raw transfer]




C5P_A_2(3AKE)
KCY_THET8
[Raw transfer]




C5P_C_9(4DIE)
?
[Raw transfer]




C5P_A_5(4DIE)
?
[Raw transfer]




C5P_B_7(4DIE)
?
[Raw transfer]




C5P_D_11(4DIE)
?
[Raw transfer]




ADP_A_3(3AKC)
KCY_THET8
[Raw transfer]




DPO_A_2(3R20)
?
[Raw transfer]




DPO_A_2(3R20)
?
[Raw transfer]




1 PsiBlast_PDB 96.8061%-123 - C2 -4E22 - KCY_YERPY -
3 PsiBlast_PDB 95.6660%-113 - C2 -2CMK 6.3 KCY_ECOLI
4 PsiBlast_PDB 95.5360%-104 - C2 -1KDO 8.8 KCY_ECOLI
108 Fugue 95.0658%-119 - C2 -1CKE - KCY_ECOLI -
2 PsiBlast_PDB 94.9660%-120 - C2 -1CKE - KCY_ECOLI -
24 PsiBlast_CBE 94.8560%-111 - C2 -1KDO 8.7 KCY_ECOLI
23 PsiBlast_CBE 94.8560%-110 - C2 -1KDP 6.6 KCY_ECOLI
21 PsiBlast_CBE 94.8560%-108 - C2 -1KDT 6.6 KCY_ECOLI
8 PsiBlast_PDB 94.5660%-122 - C2 -2FEM - KCY_ECOLI -
7 PsiBlast_PDB 94.0160%-108 - C2 -1KDT 7.1 KCY_ECOLI
5 PsiBlast_PDB 93.9460%-107 - C2 -1KDP 8.0 KCY_ECOLI
88 HHSearch 93.7660%-117 - C2 -1CKE - KCY_ECOLI -
6 PsiBlast_PDB 91.9960%-106 - C2 -1KDR 6.1 KCY_ECOLI
22 PsiBlast_CBE 91.6560%-100 - C2 -1KDR 5.7 KCY_ECOLI
9 PsiBlast_PDB 90.1560%-109 - C2 -2FEO 4.2 KCY_ECOLI
12 PsiBlast_PDB 83.3541%-104 - C2 -1Q3T - KCY_STRPN -
89 HHSearch 82.7942%-108 - C2 -3R20 3.5 ?
14 PsiBlast_PDB 82.0843%-105 - C2 -3R20 3.4 ?
90 HHSearch 80.1738% -94 - C2 -2H92 7.6 KCY_STAAW
26 PsiBlast_CBE 79.7343%-107 - C2 -4DIE 5.3 ?
91 HHSearch 78.8342%-106 - C2 -3AKE 6.7 KCY_THET8
16 PsiBlast_PDB 78.3639%-114 - C2 -3AKD 7.4 KCY_THET8
28 PsiBlast_CBE 77.6039% -86 - C2 -2H92 8.7 KCY_STAAW
11 PsiBlast_PDB 77.5943%-110 - C2 -4DIE 5.0 ?
17 PsiBlast_PDB 77.1739%-113 - C2 -3AKE 6.6 KCY_THET8
27 PsiBlast_CBE 76.7443%-108 - C2 -4DIE 5.4 ?
13 PsiBlast_PDB 76.6739% -86 - C2 -2H92 7.6 KCY_STAAW
25 PsiBlast_CBE 76.3343%-109 - C2 -4DIE 5.6 ?
29 PsiBlast_CBE 75.9139% -85 - C2 -2H92 7.8 KCY_STAAW
15 PsiBlast_PDB 75.1939%-102 - C2 -3AKC 7.1 KCY_THET8