@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA3863: (2016-02-21 )
MIEADYLVIGAGIAGASTGYWLSAHGRVVVLEREAQPGYHSTGRSAAHYTVAYGTPQVRALTAASRAFFDNPPAGFCEHPLLSPRPEMVVDFSDDPEELRRQYESGKALVPQMRLLDAEQACSIVPVLRRDKVFGATYDPTGADIDTDALHQGYLRGIRRNQGQVLCNHEALEIRRVDGAWEVRCDAGSYRAAVLVNAAGAWCDAIAGLAGVRPLGLQPKRRSAFIFAPPPGIDCHDWPMLVSLDESFYLKPDAGMLLGSPANADPVEAHDVQPEQLDIATGMYLIEEATTLTIRRPEHTWAGLRSFVADGDLVAGYAANAEGFFWVAAQGGYGIQTSAAMGEASAALIRHQPLPAHLREHGLDEAMLSPRRLSP

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FAD_A_2(3NYC)
DAUA_PSEAE
[Raw transfer]



FAD_A_3(4H1B)
DAUA_PSEAE
[Raw transfer]



FAD_A_2(3NYE)
DAUA_PSEAE
[Raw transfer]



FAD_A_2(3NYF)
DAUA_PSEAE
[Raw transfer]



FAD_A_2(3NYE)
DAUA_PSEAE
[Raw transfer]



FAD_A_2(4H1A)
DAUA_PSEAE
[Raw transfer]



FNK_A_5(3SM8)
DAUA_PSEAE
[Raw transfer]
4 PsiBlast_PDB 99.69100%-102 - C1 -3NYF 14.7 DAUA_PSEAE
5 PsiBlast_PDB 99.45100%-104 - C1 -3NYC 14.7 DAUA_PSEAE
1 PsiBlast_PDB 99.28100%-103 - C1 -4H1A 14.7 DAUA_PSEAE
6 PsiBlast_PDB 99.18100%-103 - C1 -3SM8 15.8 DAUA_PSEAE
2 PsiBlast_PDB 99.11100%-101 - C1 -4H1B 14.7 DAUA_PSEAE
3 PsiBlast_PDB 99.01100%-101 - C1 -3NYE 14.7 DAUA_PSEAE
75 Fugue 98.9099%-101 * C1 *3NYE 14.7 DAUA_PSEAE
86 HHSearch 65.1621% -74 - C1 -1Y56 - ? -
9 PsiBlast_PDB 64.5124% -82 - C1 -4PAB - M2GD_RAT -
89 HHSearch 63.6519% -76 - C1 -2GF3 - MSOX_BACB0 -
91 HHSearch 62.1419% -77 - C1 -1PJ5 - DMGO_ARTGO -
85 HHSearch 61.8217% -79 - C1 -2GAG - ? -
77 Fugue 61.0716% -73 - C1 -1X31 - ? -
79 Fugue 59.5516% -70 - C1 -1PJ5 - DMGO_ARTGO -
90 HHSearch 59.4816% -74 - C1 -2UZZ - MTOX_ECOLI -
88 HHSearch 58.6020% -61 - C1 -3AXB - ? -
96 HHSearch 57.8218% -72 - C1 -2OLN - ? -
87 HHSearch 57.6116% -78 - C1 -1RYI - GLOX_BACSU -
76 Fugue 57.3518% -58 - C1 -3VQR - ? -
8 PsiBlast_PDB 56.3325% -78 - C1 -4PAA - M2GD_RAT -