@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA3896: (2016-02-21 )
MKKNVFVFSRLAPEHLERLQCQFNVRVLEPKQGDIDAQYAAALPDTHGMIGVGRPLGARQLEQAKQLEVISSVSVGYDNYDLDYLNRRGIALTNTPDVLTETTADLGFALLISAARRVAELDAWVKAGNWKRTVDAPQFGTDVHGKKLGILGLGRIGAAIARRGRFGFGMQVLYHGNNRKPELEQELGARFLGFDELLGEADFVCVVVPLGAQTRQLIGARELGLMKPSAILVNVARGQVVDEAALVAALREKRILGAGLDVYEKEPLAESPLFALDNVVTLPHIGSATHETRRAMAERALQNFEAALRGERPLDLVNPQVWRRG

Atome Classification :

(33 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAP_B_8(2DBZ)
GYAR_PYRHO
[Raw transfer]



NAP_A_7(2DBZ)
GYAR_PYRHO
[Raw transfer]



NAP_A_4(2DBQ)
GYAR_PYRHO
[Raw transfer]



NDP_K_11(2GCG)
GRHPR_HUMAN
[Raw transfer]



NAP_A_4(2DBQ)
GYAR_PYRHO
[Raw transfer]



NDP_L_12(2GCG)
GRHPR_HUMAN
[Raw transfer]



NAP_A_2(3BAZ)
HPPR_PLESU
[Raw transfer]



NDP_J_10(2GCG)
GRHPR_HUMAN
[Raw transfer]



NDP_J_10(2GCG)
GRHPR_HUMAN
[Raw transfer]



NAP_B_4(4E5M)
PTXD_PSEST
[Raw transfer]



NAD_A_3(4NU5)
PTXD_PSEST
[Raw transfer]



NAP_A_3(4E5M)
PTXD_PSEST
[Raw transfer]



NAD_B_4(4NU5)
PTXD_PSEST
[Raw transfer]



NAD_A_3(4NU6)
PTXD_PSEST
[Raw transfer]



NAD_B_5(4NU6)
PTXD_PSEST
[Raw transfer]



GOL_A_5(2DBQ)
GYAR_PYRHO
[Raw transfer]



FMT_A_4(1HKU)
CTBP1_RAT
[Raw transfer]



NHE_E_5(2CUK)
?
[Raw transfer]



ACY_C_3(1MX3)
CTBP1_HUMAN
[Raw transfer]
24 PsiBlast_CBE 93.4544%-112 - C1 -2DBR - GYAR_PYRHO -
26 PsiBlast_CBE 92.6544%-111 - C1 -2DBR - GYAR_PYRHO -
2 PsiBlast_PDB 92.4444%-112 - C1 -2DBZ 10.3 GYAR_PYRHO
23 PsiBlast_CBE 92.1744%-110 - C1 -2DBR - GYAR_PYRHO -
21 PsiBlast_CBE 91.5044%-114 - C1 -2DBZ 10.3 GYAR_PYRHO
25 PsiBlast_CBE 91.4844%-112 - C1 -2DBR - GYAR_PYRHO -
115 HHSearch 91.2844%-111 - C1 -2DBQ 10.4 GYAR_PYRHO
22 PsiBlast_CBE 90.9844%-111 - C1 -2DBR - GYAR_PYRHO -
1 PsiBlast_PDB 90.5344%-114 * C1 *2DBR - GYAR_PYRHO -
131 HHSearch 88.7144%-120 - C1 -2CUK - ? -
114 HHSearch 85.2134%-111 - C1 -2D0I - ? -
10 PsiBlast_PDB 85.0634%-112 - C1 -2D0I - ? -
126 HHSearch 83.6535%-114 - C1 -1WWK - ? -
123 HHSearch 82.9437%-112 - C1 -2GCG 6.5 GRHPR_HUMAN
13 PsiBlast_PDB 81.9547%-121 - C1 -2CUK - ? -
14 PsiBlast_PDB 81.8835%-110 - C1 -3DDN - SERA_MYCTU -
3 PsiBlast_PDB 81.4650%-111 - C1 -2DBQ 10.5 GYAR_PYRHO
16 PsiBlast_PDB 81.3235%-111 - C1 -3DC2 - SERA_MYCTU -
57 PsiBlast_CBE 80.9432%-106 - C1 -2G76 - SERA_HUMAN -
15 PsiBlast_PDB 80.7635%-112 - C1 -1YGY - SERA_MYCTU -
33 PsiBlast_CBE 80.6847%-115 - C1 -2CUK 3.4 ?
31 PsiBlast_CBE 77.8543%-121 - C1 -2GCG 8.3 GRHPR_HUMAN
30 PsiBlast_CBE 77.1243%-116 - C1 -2GCG 6.3 GRHPR_HUMAN
6 PsiBlast_PDB 76.0743%-123 - C1 -2GCG 6.7 GRHPR_HUMAN
5 PsiBlast_PDB 73.2838%-101 - C1 -3BAZ 10.3 HPPR_PLESU
56 PsiBlast_CBE 73.0138%-109 - C1 -4NU5 10.8 PTXD_PSEST
37 PsiBlast_CBE 72.8238%-109 - C1 -4E5M 10.1 PTXD_PSEST
85 PsiBlast_CBE 72.7133%-102 - C1 -1MX3 4.0 CTBP1_HUMAN
55 PsiBlast_CBE 72.4138%-108 - C1 -4NU5 11.1 PTXD_PSEST
17 PsiBlast_PDB 72.0638%-112 - C1 -4E5M 8.8 PTXD_PSEST
79 PsiBlast_CBE 71.9433%-101 - C1 -1HKU 2.6 CTBP1_RAT
53 PsiBlast_CBE 71.1638%-112 - C1 -4NU6 9.5 PTXD_PSEST
54 PsiBlast_CBE 66.5438%-107 - C1 -4NU6 9.8 PTXD_PSEST