@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA4813: (2016-03-01 )
MNKNKTFLAAALVALAASFPVHAATDYTRTRYPIVLSHGLFGFKSVGPVDYWHAIVPALEKDGAKVFATSQSPVNSNEVRGEQLLAQVEEVLALTGAEKVNLIGHSQGGMTVRYVAGVAPQLVASVTTMGTPHKGTPVADAVTGFSEFLGPIGTEVIASAVEALFSVVDIVDGGEWVKGDALAALNSLNTPGTARFNQRFPQAIPASACGQGAETVAGVRYYSMSGTGSLTNALDPSSAGLAVTGLLFGEANDGLVGQCSSHLGSVVKDNYRMDHLDEVNQLLGLVSLFESDPTQVYRQHANRLRNVGL

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

2HS_X_3(1YS2)
LIP_BURCE
[Raw transfer]



OCP_A_3(1EX9)
LIP_PSEAE
[Raw transfer]



INK_A_3(1HQD)
LIP_BURCE
[Raw transfer]



INK_A_3(1HQD)
LIP_BURCE
[Raw transfer]



OCP_A_3(1EX9)
LIP_PSEAE
[Raw transfer]



OCP_A_3(1EX9)
LIP_PSEAE
[Raw transfer]



2HR_X_3(1YS1)
LIP_BURCE
[Raw transfer]



2HR_X_3(1YS1)
LIP_BURCE
[Raw transfer]



POT_A_4(2NW6)
LIP_BURCE
[Raw transfer]



CCP_E_6(4LIP)
LIP_BURCE
[Raw transfer]



CCP_D_5(4LIP)
LIP_BURCE
[Raw transfer]



OCP_A_3(5LIP)
LIP_BURCE
[Raw transfer]



DEP_A_3(4GXN)
?
[Raw transfer]



PE4_A_6(4HS9)
?
[Raw transfer]



IPA_A_4(4GW3)
?
[Raw transfer]



PG4_A_5(3OOS)
?
[Raw transfer]
5 PsiBlast_PDB 82.7441% -58 - C3 -4HS9 4.1 ?
21 PsiBlast_CBE 81.8244% -63 - C3 -2ES4 - LIP_BURGL -
60 Fugue 81.6755% -47 - C3 -1EX9 5.3 LIP_PSEAE
17 PsiBlast_PDB 80.8841% -64 - C3 -4GXN 3.3 ?
1 PsiBlast_PDB 80.7155% -48 - C3 -1EX9 5.3 LIP_PSEAE
71 HHSearch 80.4655% -46 - C3 -1EX9 5.3 LIP_PSEAE
23 PsiBlast_CBE 80.4244% -58 - C3 -1TAH - ? -
2 PsiBlast_PDB 80.4144% -62 - C3 -2ES4 - LIP_BURGL -
3 PsiBlast_PDB 80.3644% -59 - C3 -1CVL - LIP_BURGL -
24 PsiBlast_CBE 80.3144% -58 - C3 -1TAH - ? -
22 PsiBlast_CBE 80.2244% -58 - C3 -1TAH - ? -
4 PsiBlast_PDB 80.0844% -59 - C3 -1TAH - ? -
16 PsiBlast_PDB 80.0041% -60 - C3 -4GW3 2.8 ?
59 Fugue 78.5942% -60 - C3 -3W9U - ? -
15 PsiBlast_PDB 77.9641% -62 - C3 -3W9U - ? -
7 PsiBlast_PDB 77.3144% -47 - C3 -1YS2 5.0 LIP_BURCE
6 PsiBlast_PDB 76.8944% -50 - C3 -1YS1 4.8 LIP_BURCE
9 PsiBlast_PDB 76.7643% -48 - C3 -4LIP 3.5 LIP_BURCE
12 PsiBlast_PDB 76.4643% -47 - C3 -3LIP - LIP_BURCE -
25 PsiBlast_CBE 76.3443% -46 - C3 -4LIP 3.5 LIP_BURCE
69 HHSearch 75.9946% -51 - C3 -1YS1 4.3 LIP_BURCE
10 PsiBlast_PDB 75.9743% -48 - C3 -1HQD 3.5 LIP_BURCE
13 PsiBlast_PDB 75.8643% -47 - C3 -5LIP 5.6 LIP_BURCE
61 Fugue 75.8245% -43 - C3 -1HQD 3.5 LIP_BURCE
14 PsiBlast_PDB 75.6543% -47 - C3 -2NW6 3.8 LIP_BURCE