@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA4907: (2016-03-02 )
MSSTLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELSAKTRVLPLTLDVRDRAAMSAAVDNLPEEFATLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGSVAGKWPYPGSHVYGGTKAFVEQFSLNLRCDLQGTGVRVTNLEPGLCESEFSLVRFGGDQARYDKTYAGAHPIQPEDIAETIFWIMNQPAHLNINSLEIMPVSQSWAGFAIHRES

Atome Classification :

(27 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAP_D_8(3RKU)
YM71_YEAST
[Raw transfer]



NAP_B_6(3RKU)
YM71_YEAST
[Raw transfer]



NAP_C_7(3RKU)
YM71_YEAST
[Raw transfer]



NAP_A_5(3RKU)
YM71_YEAST
[Raw transfer]



NDP_D_11(2JAP)
?
[Raw transfer]



NDP_A_5(2JAH)
?
[Raw transfer]



NDP_B_7(2JAP)
?
[Raw transfer]



NDP_C_9(2JAP)
?
[Raw transfer]



NDP_A_5(2JAP)
?
[Raw transfer]



NAP_A_5(3P19)
?
[Raw transfer]



NAP_D_8(3P19)
?
[Raw transfer]



NAP_C_7(3P19)
?
[Raw transfer]



NAP_B_6(3P19)
?
[Raw transfer]
47 HHSearch 96.60100%-109 - C1 -2NWQ - ? -
1 PsiBlast_PDB 96.1498%-109 - C1 -2NWQ - ? -
23 PsiBlast_CBE 81.3252% -93 - C1 -3ASV - ? -
21 PsiBlast_CBE 80.6352% -94 - C1 -3ASV - ? -
25 PsiBlast_CBE 80.4352% -93 - C1 -3ASV - ? -
24 PsiBlast_CBE 79.8852% -91 - C1 -3ASV - ? -
22 PsiBlast_CBE 79.4852% -90 - C1 -3ASV - ? -
3 PsiBlast_PDB 78.5652% -91 - C1 -3ASV - ? -
26 PsiBlast_CBE 75.5134% -92 - C1 -3RKU 13.7 YM71_YEAST
4 PsiBlast_PDB 73.8634% -90 - C1 -3RKU 13.6 YM71_YEAST
48 HHSearch 73.6549%-104 - C1 -3ASU - ? -
28 PsiBlast_CBE 73.3534% -91 - C1 -3RKU 13.9 YM71_YEAST
2 PsiBlast_PDB 72.9452% -99 - C1 -3ASU - ? -
27 PsiBlast_CBE 72.8834% -89 - C1 -3RKU 13.6 YM71_YEAST
29 PsiBlast_CBE 66.3434%-111 - C1 -2EHD - ? -
33 PsiBlast_CBE 64.6732% -98 - C1 -3TFO - ? -
34 PsiBlast_CBE 64.0432%-101 - C1 -3TFO - ? -
6 PsiBlast_PDB 63.9236% -88 - C1 -2JAP 13.4 ?
9 PsiBlast_PDB 63.5426% -85 - C1 -1XG5 - DHR11_HUMAN -
31 PsiBlast_CBE 62.8436% -87 - C1 -2JAP 13.3 ?
30 PsiBlast_CBE 62.7436% -87 - C1 -2JAP 13.6 ?
32 PsiBlast_CBE 62.3636% -89 - C1 -2JAP 13.5 ?
7 PsiBlast_PDB 60.7836% -90 - C1 -2JAH 13.8 ?
37 PsiBlast_CBE 60.4632% -97 - C1 -3P19 12.6 ?
36 PsiBlast_CBE 59.1132% -97 - C1 -3P19 12.8 ?
8 PsiBlast_PDB 55.3532% -91 - C1 -3P19 13.5 ?
35 PsiBlast_CBE 54.8432% -88 - C1 -3P19 13.4 ?