@TOME V2.3
(Nov 2016)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo2534: (2016-04-04 )
MSLGVIAAAIAVGLGALGAGIGNGLIVSKTVEGVARQPEARSMLQSIMFVGVALVEALPIIAVVIAFMVLNK
Atome Classification :
(20 SA)
---------.......---..10....-----.-----...20........30........40........50........60----....----....70.--------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------MS
L
G
V
I
A
---
A
A
I
A
V
G
L
G
-----
A
-----
L
G
A
GIGN
G
L
I
V
S
K
T
V
E
G
VARQ
P
E
A
R
S
M
L
Q
S
I
M
F
V
G
V
A
L
V
E
A
L
P
I
I
----
A
V
V
I
----
A
F
M
VLNK--------
1
PsiBlast_PDB
82.90
76%
-165
* C8 *
1WU0
-
ATPL_BACP3
A:
[1-72]
---------
M
S
L
G
V
L
A
---
A
A
I
A
V
G
L
G
-----
A
-----
L
G
A
G
I
G
N
G
L
I
V
S
R
T
I
E
G
I
A
R
Q
P
E
L
R
P
V
L
Q
T
T
M
F
I
G
V
A
L
V
E
A
L
P
I
I
----
G
V
V
F
----
S
F
I
Y
L
G
R
--------
205
HHSearch
81.42
77%
-168
- C8 -
1WU0
-
ATPL_BACP3
A:
[1-71]
---------
M
S
L
G
V
L
A
---
A
A
I
A
V
G
L
G
-----
A
-----
L
G
A
G
I
G
N
G
L
I
V
S
R
T
I
E
G
I
A
R
Q
P
E
L
R
P
V
L
Q
T
T
M
F
I
G
V
A
L
V
E
A
L
P
I
I
----
G
V
V
F
----
S
F
I
Y
L
G
---------
17
PsiBlast_PDB
63.83
43%
-127
- C5 -
2WGM
-
ATPL_ILYTA
A:
[9-79]
-------------
V
V
L
---
A
A
S
A
V
G
A
G
-----
T
A
M
IA
G
I
G
P
G
V
G
Q
G
Y
A
A
G
K
A
V
E
S
V
A
R
Q
P
E
A
K
G
D
I
I
S
T
M
V
L
G
Q
A
V
A
E
S
T
G
I
Y
----
S
L
V
I
----
A
L
I
L
L
----------
207
HHSearch
63.68
41%
-136
- C6 -
1A91
-
ATPL_ECOLI
A:
[7-77]
----------
D
L
L
Y
M
A
---
A
A
V
M
M
G
L
A
-----
A
-----
I
G
A
A
I
G
I
G
I
L
G
G
K
F
L
E
G
A
A
R
Q
P
D
L
I
P
L
L
R
T
Q
F
F
I
V
M
G
L
V
D
A
I
P
M
I
----
A
V
G
L
----
G
L
Y
V
M
F
A
--------
16
PsiBlast_PDB
63.48
43%
-127
- C5 -
1YCE
-
ATPL_ILYTA
A:
[9-79]
-------------
V
V
L
---
A
A
S
A
V
G
A
G
-----
T
A
M
IAG
I
G
P
G
V
G
Q
G
Y
A
A
G
K
A
V
E
S
V
A
R
Q
P
E
A
K
G
D
I
I
S
T
M
V
L
G
Q
A
V
A
E
S
T
G
I
Y
----
S
L
V
I
----
A
L
I
L
L
----------
198
Fugue
62.52
22%
-220
- C1 -
4CU5
-
?
A:
[1-85]
---------
M
Y
K
H
T
I
V
Y
D
G
E
V
D
K
I
S
A
T
-----
V
-----
V
G
W
G
Y
N
D
G
K
I
L
I
C
D
I
K
D
Y
V
P
G
Q
-----
T
Q
N
L
Y
V
V
G
G
G
A
C
E
K
I
S
S
I
TK
E
K
F
I
M
I
K
G
ND
R
F
D
T
L
Y
K
A
L
D
F
I
NR-
19
PsiBlast_PDB
60.87
35%
-139
- C5 -
2XND
-
AT5G1_BOVIN
J:
[10-71]
---------------
A
---
G
A
A
T
V
G
V
A
-----
G
-----
S
G
A
G
I
G
T
--
V
F
G
S
L
I
I
G
Y
A
R
N
P
S
L
K
Q
Q
L
F
S
Y
A
I
L
G
F
A
L
S
E
A
M
G
L
F
----
C
L
M
V
----
A
F
L
I
L
----------
206
HHSearch
60.40
42%
-125
- C5 -
2XQU
12
?
A:
[10-78]
----------
A
A
S
V
I
A
---
A
A
L
A
V
G
I
G
-----
S
-----
I
G
P
G
L
G
Q
G
Q
A
A
G
Q
A
V
E
G
I
A
R
Q
P
E
A
E
G
K
I
R
G
T
L
L
L
S
L
A
F
M
E
A
L
T
I
Y
----
G
L
V
V
----
A
L
V
L
L
F
A
--------
209
HHSearch
60.26
41%
-125
- C5 -
3ZK1
4
ATPL_FUSNN
A:
[12-81]
----------
G
C
S
A
V
G
---
A
G
L
A
M
-
I
A
-----
G
-----
L
G
P
G
I
G
E
G
Y
A
A
G
K
A
V
E
S
V
A
R
Q
P
E
A
R
G
S
I
I
S
T
M
I
L
G
Q
A
V
A
E
S
T
G
I
Y
----
S
L
V
I
----
A
L
I
L
L
Y
A
--------
195
Fugue
59.65
41%
-142
- C6 -
1C0V
-
ATPL_ECOLI
A:
[1-79]
----M
E
N
L
N
M
D
L
L
Y
M
A
---
A
A
V
M
M
G
L
A
-----
A
-----
I
G
A
A
I
G
I
G
I
L
G
G
K
F
L
E
G
A
A
R
Q
P
D
L
I
P
L
L
R
T
Q
F
F
I
V
M
G
L
V
D
A
I
P
M
I
----
A
V
G
L
----
G
L
Y
V
M
F
A
VA------
172
PsiBlast_CBE
59.09
36%
-85
- C5 -
4BEM
1
?
G:
[6-76]
-----------
L
D
F
I
K
---
A
C
S
A
I
G
A
G
IAMIA
G
-----
V
G
P
G
I
G
Q
G
F
A
A
G
K
G
A
E
A
V
G
R
Q
P
E
A
Q
S
D
I
I
R
T
M
L
L
G
A
A
V
A
E
T
T
G
I
Y
----
G
L
I
V
----
A
L
I
L
L
----------
173
PsiBlast_CBE
58.98
36%
-93
- C5 -
4BEM
4
?
F:
[6-76]
-----------
L
D
F
I
K
---
A
C
S
A
I
G
A
G
IAMIA
G
-----
V
G
P
G
I
G
Q
G
F
A
A
G
K
G
A
E
A
V
G
R
Q
P
E
A
Q
S
D
I
I
R
T
M
L
L
G
A
A
V
A
E
T
T
G
I
Y
----
G
L
I
V
----
A
L
I
L
L
----------
196
Fugue
58.85
34%
-121
- C5 -
1YCE
-
ATPL_ILYTA
A:
[1-89]
MD
M
L
F
A
K
T
V
V
L
A
A
S
A
V
---
G
A
G
T
A
M
I
A
-----
G
-----
I
G
P
G
V
G
Q
G
Y
A
A
G
K
A
V
E
S
V
A
R
Q
P
E
A
K
G
D
I
I
S
T
M
V
L
G
Q
A
V
A
E
S
T
G
I
Y
----
S
L
V
I
----
A
L
I
L
L
Y
A
NPFVGLLG
18
PsiBlast_PDB
58.08
36%
-88
- C5 -
4BEM
2
?
A:
[6-76]
-----------
L
D
F
I
K
---
A
C
S
A
I
G
A
G
I
A
M
IA
G
-----
V
G
P
G
I
G
Q
G
F
A
A
G
K
G
A
E
A
V
G
R
Q
P
E
A
Q
S
D
I
I
R
T
M
L
L
G
A
A
V
A
E
T
T
G
I
Y
----
G
L
I
V
----
A
L
I
L
L
----------
170
PsiBlast_CBE
57.94
36%
-90
- C5 -
4BEM
8
?
I:
[6-76]
-----------
L
D
F
I
K
---
A
C
S
A
I
G
A
G
IAMIA
G
-----
V
G
P
G
I
G
Q
G
F
A
A
G
K
G
A
E
A
V
G
R
Q
P
E
A
Q
S
D
I
I
R
T
M
L
L
G
A
A
V
A
E
T
T
G
I
Y
----
G
L
I
V
----
A
L
I
L
L
----------
36
PsiBlast_CBE
57.92
43%
-130
- C5 -
3V3C
1
ATPH_PEA
K:
[8-73]
-------------
V
I
A
---
A
G
L
A
V
G
L
A
-----
S
-----
I
G
P
G
V
G
Q
G
T
A
A
G
Q
A
V
E
G
I
A
R
Q
P
E
A
E
D
K
I
R
G
T
L
L
L
S
L
A
F
M
E
A
L
T
I
Y
----
G
L
V
V
----
A
L
A
L
L
----------
174
PsiBlast_CBE
57.85
36%
-89
- C5 -
4BEM
6
?
E:
[6-76]
-----------
L
D
F
I
K
---
A
C
S
A
I
G
A
G
IAMIA
G
-----
V
G
P
G
I
G
Q
G
F
A
A
G
K
G
A
E
A
V
G
R
Q
P
E
A
Q
S
D
I
I
R
T
M
L
L
G
A
A
V
A
E
T
T
G
I
Y
----
G
L
I
V
----
A
L
I
L
L
----------
34
PsiBlast_CBE
57.68
43%
-130
- C5 -
3V3C
12
ATPH_PEA
M:
[8-73]
-------------
V
I
A
---
A
G
L
A
V
G
L
A
-----
S
-----
I
G
P
G
V
G
Q
G
T
A
A
G
Q
A
V
E
G
I
A
R
Q
P
E
A
E
D
K
I
R
G
T
L
L
L
S
L
A
F
M
E
A
L
T
I
Y
----
G
L
V
V
----
A
L
A
L
L
----------
177
PsiBlast_CBE
57.58
36%
-95
- C5 -
4BEM
2
?
B:
[6-76]
-----------
L
D
F
I
K
---
A
C
S
A
I
G
A
G
IAMIA
G
-----
V
G
P
G
I
G
Q
G
F
A
A
G
K
G
A
E
A
V
G
R
Q
P
E
A
Q
S
D
I
I
R
T
M
L
L
G
A
A
V
A
E
T
T
G
I
Y
----
G
L
I
V
----
A
L
I
L
L
----------
208
HHSearch
57.30
32%
-115
- C5 -
2XND
-
AT5G1_BOVIN
J:
[4-72]
----------
A
A
K
F
I
G
---
A
G
A
A
T
-
V
G
-----
V
-----
A
G
S
G
A
G
I
G
T
V
F
G
S
L
I
I
G
Y
A
R
N
P
S
L
K
Q
Q
L
F
S
Y
A
I
L
G
F
A
L
S
E
A
M
G
L
F
----
C
L
M
V
----
A
F
L
I
L
F
---------