@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu20880: (2016-07-02 )
MNNIGEIISNFEGIIGALLGVIVTLILTHILKHFGQIKFYIVDFEIYFKTDNDGWGTNVMPSKDEAKQIEIHSQIEIYNGAEIPKVLREIKFCFYKNTNLIVSVTPDDKATTEEFAEFGYYRDKLFNINLPSKQIIAINIIKFLNEKETKQVKKCNRVYLEAKDHNGKMYKVFLGEF
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.......-..-10---........------20-.........30....--...-----..40...-.....50-..--...--.-..60........---------70.---------.......80...--------------.-....90.-.......100..---...-----..110..--..-..--.120..-.....130..-..-.---------...140.-.---...-..150....----...160...--.....170.....---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MN
N
I
G
E
I
-
I
S
-
N
F
---
E
G
I
I
G
A
L
L
------
G
--
V
I
V
T
L
I
L
T
H
I
-
L
K
HF--G
Q
I
-----
K
F
Y
I
V
D
F
-
E
I
Y
F
K
TD-ND--GWG--T-NVMPSKDEA
K
Q
I
---------
E
I
H
---------
S
Q
I
E
IYNG
A
E
I
P
--------------
K
-
V
L
R
E
I
K
F
-
C
F
YKNT
N
L
I
V
S
V---TPD-----DKA
T
T
E
E
--
F
A
-
E
F--GY
Y
R
D
K
-
L
F
NINL-PS
K
-
Q
I
-
I
---------
A
I
N
I
I
K
F
-L---
N
E
K
-
E
T
K
Q
V
K
K
C
N
----
R
V
Y
L
E
-AKD--HNG
K
M
Y
K
V
FLGEF---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
59.69
19%
-8
- C7 -
5I0P
2
?
A:
[13-366]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EHQLDYPFAD
T
L
P
A
AG
D
T
F
E
VAPG
V
R
W
L
R
M
P
L
PFSLD
H
I
N
L
W
L
L
R
D
E
I
DG
Q
A
G
W
T
I
V
D
CG
I
S
S
-
E
A
I
-
R
T
-
H
W
---
E
Q
I
F
D
R
H
L
------
D
GL
P
V
L
R
V
L
V
T
H
C
H
P
D
H
F
--
G
L
A
-----
N
W
L
C
E
G
G
-------
D
-
Q
G
--
R
W
N
--
V
-
R
L
W
M
T
L
G
E
Y
M
F
G
---------
C
L
M
---------
A
----------------------------------------------------------
A
G
A
A
A
D
H
--
F
A
-
R
H
--
G
L
Y
Y
S
D
-
L
V
P
A
V
P
-
P
R
Y
--------------------------------
R
R
L
R
E
G
D
----
A
V
K
I
--------
G
A
R
T
W
R
V
V
T
G
Y
G
HSP
E
H
C
A
L
H
SEADGVLISGDMVLPRIS
T
N
V
S
V
F
DLEPEAN
P
L
A
L
Y
L
E
S
L
G
R
Y
E
T
MAPDT
L
V
L
P
SHGKPFRG
V
R
T
R
I
A
Q
L
R
A
H
H
D
A
R
L
E
E
V
R
V
A
C
A
E
K
P
M
S
AAGIVPIMFT
F
A
L
G
E
A
L
A
H
L
N
L
L
W
L
A
GE
L
V
R
E
H
G
DDG
V
I
R
Y
A
R
A---------------------------------
36
Fugue
54.25
17%
8
- C9 -
2WFG
1
?
A:
[2-251]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G
Y
V
G
I
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I
R
L
T
D
V
-
A
P
-
Q
A
---
Q
E
L
F
K
K
E
S
LDVKEN
K
--
V
Y
L
V
A
A
T
L
R
P
-
E
T
M
Y
--
G
Q
T
-----
C
C
F
V
S
P
K
-
I
D
Y
G
V
F
D
-
A
G
--
N
-
G
--
D
-
Y
F
I
T
T
E
R
A
F
K
N
M
---------
S
F
Q
NLTPKRG
Y
Y
K
P
L
F
T
I
N
G
K
T
L
I
G
S
R
I
D
A
P
YAVNKN
L
R
-
V
L
P
M
E
T
V
-
L
A
T
K
G
T
G
V
V
T
C
V
PSD
S
P
D
-----
D
F
V
T
T
R
D
--
L
A
N
K
P
--
E
Y
Y
G
I
E
-
K
D
W
V
Q
T
-
D
I
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-
P
I
-
V
HTEKYGDK
C
A
E
F
L
V
N
D
-
L
KIQ
S
P
K
-
D
S
V
Q
L
A
N
A
K
----
E
L
A
Y
K
-
E
G
F
--
Y
N
G
T
M
L
I
G
K
Y
K
G
D
KVEDA
K
P
K
V
K
Q
D
L
I
D
E
GL
A
F
V
Y
N
E---------------------------------------------------------------------------------------------------------------------------------------------------------
37
Fugue
51.39
16%
28
- C2 -
2P3P
-
?
A:
[9-205]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG
E
L
E
R
C
F
L
A
M
P
E
S
V
L
P
I
-
V
T
M
E
E
---
R
N
D
L
C
R
R
A
------
G
--
H
L
S
G
F
T
H
T
A
S
-
L
E
S
S
L
G
G
T
V
-----
T
F
L
L
N
R
N
-
F
I
R
I
Q
T
S
-
T
V
--
G
E
V
--
F
M
R
I
L
P
F
S
D
S
S
S
V
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C
V
V
T
T
V
LHP
V
A
D
---------
S
R
I
D
F
Y
T
T
E
W
----------------
K
-
P
L
K
T
D
R
F
-
W
Q
Q
P
R
I
E
D
F
F
L
P
---
H
T
D
-----
R
Q
S
Y
A
Y
Q
--
A
I
-
Y
A
--
S
L
T
P
S
Y
M
Q
V
S
L
S
E
-
E
S
D
-
T
L
S
I
---------
R
Q
T
V
T
E
T
-
L
---
A
E
E
-
E
K
P
L
A
A
I
--------
F
L
S
-
P
E
P
-----
L
V
Y
R
W
Q
S
G
R
F
V
R
Q------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
50.41
20%
58
- C8 -
4ZRX
7
?
A:
[5-584]
E
N
Y
Y
V
K
H
V
E
F
PQSAT
I
E
Q
K
V
D
M
A
A
R
L
V
P
T
P
Q
Q
Y
A
W
Q
Q
M
E
L
T
A
F
L
HFG
I
N
T
F
T
GREWGDGKEDPALFNPSELD
A
E
Q
W
V
R
T
L
K
E
A
GFK
M
V
L
L
TAKHHDGFCLWPTATTKHSVASSPWKNGQGD
V
V
K
E
L
R
A
A
C
D
K
Y
D
M
K
F
G
V
Y
L
S
PWDRNAECYGD
S
P
R
Y
N
D
F
F
I
R
Q
L
T
E
L
L
T
NYGEVH
E
V
W
F
D
GANGEGPNGKKQVYD
W
D
A
F
Y
Q
T
I
Q
R
L
QPK
A
V
M
A
IMGDDVRWVGNEKGVGRETEWNATVLTPGIYAR
S
Q
E
N
N
K
R
L
G
V
-
F
S
-
K
A
---
E
-------------------
D
L
G
S
R
K
I
-
L
E
K
A
--
T
E
L
-----
F
W
Y
P
S
E
V
-
D
V
S
I
R
P
------
G
W
-------
F
Y
H
A
E
E
D
G
K
V
---------
K
S
---------------------
L
--------------
K
-
H
L
S
D
I
Y
F
Q
S
V
G
Y
N
S
V
L
L
L
N
I
---
P
P
D
RRGLI
H
E
A
D
I
K
R
--
L
K
-
E
F
--
A
D
Y
R
Q
Q
-
T
F
A
D
N
R
-
V
K
N
-
G
R
-
K
---------
Y
W
S
T
T
S
------
G
G
E
-
A
V
Y
A
L
K
S
K
S
----
E
I
N
L
V
M
L
Q
E
DI
T
K
G
Q
R
V
E
A
F
T
V
E
A
L
T
DNGWKEV
G
K
G
T
T
IGY
K
R
M
L
R
F
P
A
V
N
A
N
K
L
R
V
R
IDECRL
T
A
Y
V
S
Q
V
A
A
Y
Y
A
E
P
L
Q
E
E
TTKEDWNNLPRSGWKQVAASPLTIDLG
K
T
V
T
L
S
S
F
T
Y
A
P
S
KAEVKPTMAF
R
Y
Q
F
F
V
S
MDGK
S
W
K
E
V
PASGEFSNIMHNP
L
P
Q
T
V
A
F
S
Q
K
V
Q
A
R
F
I
K
L
E
A
T
T
PDA
T
V
A
K
V
N
MNE
I
G
V
M
V
I
35
Fugue
48.85
18%
56
- C12 -
1V0A
4
A:
[3-175]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
A
V
G
E
K
M
L
D
-
D
F
---
E
G
V
L
N
W
G
S
------
Y
--
S
G
E
G
A
K
V
S
T
K
-
I
V
S
G
--
K
T
----------
G
N
G
M
E
V
S
Y
T
G
T
-
T
D
--
G
Y
W
G
T
V
-
Y
S
L
P
D
G
D
W
S
K
W
L
---------
K
I
S
---------
F
D
I
K
S
-
V
A
N
E
I
R
--------------
F
M
I
A
E
K
S
I
N
-
G
V
G
D
G
E
H
W
V
Y
S
I
---
T
P
D
-----
S
S
W
K
T
I
E
I
P
F
S
-
S
F
--
R
R
R
L
D
Y
-
Q
P
P
G
Q
D
M
S
G
T
L
D
L
-
D
---------
N
I
D
S
I
H
F
M
Y
---
A
N
N
-
K
S
G
K
F
V
V
D
N
----
I
K
L
I
G
-
A
L
E
--
H
H
H
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
43.00
15%
-16
* C12 *
1R3E
3
TRUB_THEMA
A:
[1-309]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
K
H
G
I
L
V
A
Y
K
P
KGPT
S
H
D
V
V
D
E
V
R
K
K
L
KTR
K
V
G
H
G
G
T
L
-
D
P
-
F
A
---
C
G
V
L
I
I
G
V
------
N
--
Q
G
T
R
I
L
E
F
Y
K
-------
D
L
K
-----
K
V
Y
W
V
K
M
-
R
L
G
L
I
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--
I
T
G
--
E
-
V
V
E
E
R
E
C
N
V
T
E
E
---------
E
I
R
---------
E
A
I
F
S
F
V
G
-----------------------------
E
Y
D
Q
V
P
P
A
Y
S
A
---
K
K
Y
-----
K
G
E
R
L
Y
K
--
L
A
-
R
E
--
G
K
I
I
N
L
---------
P
P
-
K
R
-
V
---------
K
I
F
K
I
W
D
-
V
---
N
I
E
-
G
-------
R
----
D
V
S
F
R
-
V
E
V
--
S
P
G
T
Y
I
R
S
L
C
M
D
I
G
Y
K
L
G
C
G
A
T
A
V
E
L
V
RESVGPHTIEESLNVFEAA
P
E
E
I
E
N
R
IIPLEKCLEW
L
P
R
V
V
V
HQES
T
K
M
I
L
N
GSQIHLEMLKEWDGFKKG
E
V
V
R
V
F
NEEGRLL
A
L
A
E
A
ERNSSFLETLRKERVLTLRKVFNTR--------------------------------------------------
25
HHSearch
42.80
23%
-346
* C10 *
4B9P
1
?
A:
[23-53]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
Q
---------
P
R
I
K
L
I
N
T
G
N
T
P
--------------
I
-
T
L
S
E
V
K
I
-
R
Y
Y
Y
T
K
D
Q
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
40.85
47%
-100
- C11 -
2DGW
-
RBM19_HUMAN
A:
[338-360]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
D
F
-
S
---
N
E
E
-
E
V
K
Q
A
L
K
C
N
----
R
E
Y
M
G
-
G
R
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
40.60
17%
-333
- C10 -
4B9C
1
?
A:
[20-49]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
I
D
---------
F
S
F
R
M
F
N
T
G
N
E
A
--------------
I
-
D
L
K
D
V
K
V
-
R
Y
Y
F
K
E
D
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
39
Fugue
40.33
11%
4
- C6 -
1Y13
3
?
A:
[19-181]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
---
S
S
A
E
V
S
V
E
------
S
--
P
S
F
S
F
N
C
A
H
F
-
I
A
Y
N
--
G
F
R
E
T
L
HG
H
N
Y
N
V
S
L
-
K
V
R
G
Y
V
R
-
D
D
--
G
Y
V
--
I
-
D
F
S
I
L
K
E
K
V
K
K
V
---------
C
N
K
---------
L
D
H
H
F
I
L
P
I
Y
S
D
----------------------
V
-
L
K
F
E
N
V
K
N
N
I
K
I
---
I
C
E
-----
D
N
S
E
Y
S
F
--
P
E
-
R
D
------
C
I
-
K
L
P
I
K
H
-
S
S
T
-
E
E
-
I
---------
G
Q
Y
I
L
N
Q
-
L
---
I
E
E
M
D
V
S
L
L
K
S
R
H
IH
Y
I
E
I
S
V
S
-
E
S
P
--
T
Q
K
A
I
V
H
K
Y
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
39.65
37%
-166
- C11 -
3O3M
-
?
B:
[154-188]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
I
E
E
A
---------
K
I
H
---------
E
S
I
E
V
Y
N
--
E
H
R
--------------
K
-
T
M
R
D
F
V
E
-
V
A
Y
K
H
S
N
T
I
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
HHSearch
39.49
17%
-289
- C10 -
4B9F
1
CIPA_CLOTH
A:
[17-46]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
I
N
---------
P
Q
F
K
V
T
N
T
G
S
S
A
--------------
I
-
D
L
S
K
L
T
L
-
R
Y
Y
Y
T
V
D
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
39.08
37%
-172
- C11 -
3O3N
-
?
B:
[154-188]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
I
E
E
A
---------
K
I
H
---------
E
S
I
E
V
Y
N
--
E
H
R
--------------
K
-
T
M
R
D
F
V
E
-
V
A
Y
K
H
S
N
T
I
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
38.60
37%
-166
- C11 -
3O3O
-
?
B:
[154-188]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
I
E
E
A
---------
K
I
H
---------
E
S
I
E
V
Y
N
--
E
H
R
--------------
K
-
T
M
R
D
F
V
E
-
V
A
Y
K
H
S
N
T
I
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
37.33
33%
46
- C11 -
4IJS
1
NCAP_BUNYW
A:
[98-157]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
P
---
V
P
D
-----
D
G
L
T
L
H
R
--
L
S
-
G
F
L
A
R
Y
L
L
E
K
-
M
L
K
V
S
E
-
P
E
K
-
L
I
-
I
---------
K
S
K
I
I
N
P
-
L
---
A
E
K
-
N
G
I
T
W
N
D
G
E
----
E
V
Y
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
35.59
33%
-251
- C11 -
4S0F
-
?
A:
[266-313]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
G
E
I
-
I
S
-
R
F
M
D
A
S
K
I
R
Q
A
I
S
------
G
--
A
T
L
T
I
M
I
D
T
I
-
M
A
V
I
--
G
G
I
-----
L
L
Y
I
Q
N
S
-
S
L
F
F
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
PsiBlast_PDB
35.47
32%
-38
* C11 *
1JPU
2
GLDA_GEOSE
A:
[262-317]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
T
A
L
E
G
-
E
I
H
H
L
T
H
-
G
E
K
V
A
F
G
--
T
-
L
V
Q
L
A
L
E
E
H
S
Q
Q
---------
E
I
E
---------
R
Y
I
E
L
Y
L
C
L
D
L
P
--------------
V
-
T
L
E
D
I
K
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
PsiBlast_PDB
35.24
32%
-42
- C11 -
1JQA
3
GLDA_GEOSE
A:
[262-317]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
T
A
L
E
G
-
E
I
H
H
L
T
H
-
G
E
K
V
A
F
G
--
T
-
L
V
Q
L
A
L
E
E
H
S
Q
Q
---------
E
I
E
---------
R
Y
I
E
L
Y
L
C
L
D
L
P
--------------
V
-
T
L
E
D
I
K
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
35.04
33%
36
- C11 -
3ZLA
-
NCAP_BUNYW
A:
[86-142]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
D
-----
D
G
L
T
L
H
R
--
L
S
-
G
F
L
A
R
Y
L
L
E
K
-
M
L
K
V
S
E
-
P
E
K
-
L
I
-
I
---------
K
S
K
I
I
N
P
-
L
---
A
E
K
-
N
G
I
T
W
N
D
G
E
----
E
V
Y
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
PsiBlast_PDB
34.69
32%
-45
- C11 -
1JQ5
3
GLDA_GEOSE
A:
[262-317]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
T
A
L
E
G
-
E
I
H
H
L
T
H
-
G
E
K
V
A
F
G
--
T
-
L
V
Q
L
A
L
E
E
H
S
Q
Q
---------
E
I
E
---------
R
Y
I
E
L
Y
L
C
L
D
L
P
--------------
V
-
T
L
E
D
I
K
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------