@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 154_tIV_ARATH: (2014-05-02 )
IPVCNIDTNDLAKCRPAVTGNNPPPPGPDCCAVARVANLQCLCPYKPYLPTVGIDPSRVRPLLANCGVNSPSCF
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------....----.....10........----20.----...-------.-------.----.----..30.....-..------------.----------40--...-----------------.---------.--.-----.--------.---.-50-------.-.----..---------....60.------.......70---.-.---------..-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IPVC----NIDT
N
D
L
A
KCRPAVT----G-N----NPP-------P-------P----G----
P
D
C
C
A
V
A
R
V-AN------------
L
----------
Q
---
C
LC-----------------P---------Y--K-----P--------Y---L-PT-------V-G----I
D
---------
P
S
R
V
R
P
L
------
L
A
NCGVNS----P-S---------CF-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
Fugue
87.91
36%
-121
- C1 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
I
D
L
C
----
G
M
S
Q
D
E
L
N
E
C
K
P
A
V
S
----
K
-
E
----
N
P
T
-------
S
-------
P
----
S
----
Q
P
C
C
T
A
L
Q
H
-
A
D
------------
F
----------
A
---
C
L
C
-----------------
G
---------
Y
--
K
NS---
P
--------
W
---
L
-
G
S
-------
F
-
G
----
V
D
---------
P
E
L
A
S
A
L
------
P
K
Q
C
G
L
A
N
----
A
P
T
---------
C
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
83.85
34%
-109
- C1 -
2RKN
2
DIRL1_ARATH
A:
[3-75]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
L
C
----
G
M
S
Q
D
E
L
N
E
C
K
P
A
V
S
----
K
-
E
----
N
P
T
-------
S
-------
P
----
S
----
Q
P
C
C
T
A
L
Q
H
-
A
D
------------
F
----------
A
---
C
L
C
-----------------
G
---------
Y
--
K
-----
N
--------
S
P
W
-
L
-
G
S
-------
F
-
G
----
V
D
---------
P
E
L
A
S
A
L
------
P
K
Q
C
G
L
A
N
----
A
-
P
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
36
SP3
74.93
22%
-114
* C1 *
1HSS
-
IAA1_WHEAT
A:
[5-124]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
C
YPGQ
A
F
Q
V
P
A
L
P
A
C
R
P
L
L
R
L
Q
C
N
G
-
S
----
Q
V
P
-------
E
-------
A
----
V
L
---
R
D
C
C
Q
Q
L
A
H
-
I
S
------------
E
----------
W
---
C
R
C
-----------------
G
A
L
Y
S
M
L
D
S
M
Y
--
K
-----
E
--------
H
---
G
-
A
F
-------
P
-
R
----
C
R
R
E
V
V
-----
K
L
T
A
A
S
I
------
T
A
V
C
R
L
P
I
----
V
-
V
DASGDGAYV
C
K
D
V
A
A
YPDA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
SP3
70.48
25%
-109
- C1 -
1HYP
-
?
?:
[6-80]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
S
C
----
P
----
D
L
S
I
C
L
N
I
L
G
----
G
-
S
----
L
G
----------------
T
----
V
----
D
D
C
C
A
L
I
G
G
L
G
D
------------
I
----------
E
A
I
V
C
L
C
-----------------
I
---------
Q
--
L
-----
R
--------
A
---
L
-
G
I
-------
L
-
N
----
L
----------
N
R
N
L
Q
L
I
------
L
N
S
C
G
R
S
Y
----
P
-
S
---------
N
A
TCPRT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
69.86
29%
-96
- C1 -
1T12
-
NLTP1_TOBAC
A:
[3-78]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
C
----
G
Q
V
T
S
N
L
A
P
C
L
A
Y
L
R
----
N
-
T
----
G
-----------------
P
----
L
----
G
R
C
C
G
G
V
K
A
-
L
V
------------
N
S
A
RT
T
E
D
R
Q
I
A
---
C
T
C
---------------------------
L
--
K
-----
S
--------
A
---
A
-
G
A
-------
I
S
G
----
I
N
---------
L
G
K
A
A
G
L
------
P
S
T
C
G
V
N
I
----
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
69.43
35%
-95
- C1 -
2ALG
2
NLTP1_PRUPE
A:
[3-79]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
C
----
G
Q
V
S
S
S
L
A
P
C
I
P
Y
V
R
----
G
-
G
------
G
-------
A
-------
V
----
P
----
P
A
C
C
N
G
I
R
N
-
V
N
N
L
A
RT
T
P
D
R
Q
--
A
----------
A
---
C
N
C
---------------------------
L
--
K
-----
Q
--------
L
---
S
-
A
S
-------
V
P
G
----
V
N
---------
P
N
N
A
A
A
L
------
P
G
K
C
G
V
S
I
----
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
68.49
29%
-107
- C1 -
1N89
1
NLT2G_WHEAT
A:
[4-67]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
S
Q
L
A
V
C
A
S
A
I
L
----
S
-
G
------
A
-------
K
-------
P
----
S
----
G
E
C
C
G
N
L
R
A
-
Q
Q
-----------------------
G
---
C
F
C
-----------------
Q
---------
Y
--
A
-----
K
--------
D
PT-
Y
-
G
Q
---------
Y
----
I
R
---------
S
P
H
A
R
D
T
------
L
T
S
C
G
L
A
V
----
P
-
H
---------
C
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
SP3
67.26
22%
-91
- C1 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
I
S
-
C
----
G
Q
V
A
S
A
I
A
P
C
I
S
Y
A
R
----
G
-
Q
----
G
S
G
---------------
P
----
S
----
A
G
C
C
S
G
V
R
S
-
L
N
N
A
ART
T
A
D
R
R
A
A
C
----------
N
---
C
L
K
-----------------
N
---------
A
--
A
-----
A
--------
G
---
V
-
S
----------
G
----
L
N
---------
A
G
N
A
A
S
I
------
P
S
K
C
G
V
S
I
----
P
-
Y
---------
T
I
STSTDCSRVN---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
62.63
30%
-74
- C1 -
1SIY
-
NLTP1_VIGRR
A:
[2-78]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
C
----
G
Q
V
Q
G
N
L
A
Q
C
I
G
F
L
Q
----
K
-
G
------
G
-------
V
-------
V
----
P
----
P
S
C
C
T
G
V
K
N
-
I
L
NSSRTTAD----
R
----------
R
A
V
-
C
S
C
-----------------
L
------------
K
-----
A
--------
A
---
A
-
G
A
-------
V
R
G
----
I
N
---------
P
N
N
A
E
A
L
------
P
G
K
C
G
V
N
I
----
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
61.56
27%
-74
- C1 -
1AFH
-
NLTP_MAIZE
A:
[3-80]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
C
----
G
Q
V
A
S
A
I
A
P
C
I
S
Y
A
R
----
G
-
Q
----
G
S
--------
G
-------
P
----
S
----
A
G
C
C
S
G
V
R
S
-
L
N
------------
N
A
A
RT
T
A
D
R
R
A
A
---
C
N
C
---------------------------
L
--
K
-----
N
--------
A
---
A
-
A
G
-------
V
S
G
----
L
N
---------
A
G
N
A
A
S
I
------
P
S
K
C
G
V
S
I
----
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
37
SP3
59.23
28%
-67
- C1 -
1BEA
-
?
?:
[5-120]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
C
VPGW
A
I
P
H
N
P
L
P
S
C
R
W
Y
V
T
S
R
TC
G
-
I
----
G
P
R
-------
L
-------
P
----
W
P
E
L
K
R
R
C
C
R
E
L
A
D
-
I
P
------------
A
----------
Y
---
C
R
C
T
A
L
S
I
L
M
D
G
A
I
P
P
G
PDA
Q
---------
L
--
E
-----
G
--------
R
---
L
-
E
D
-------
L
P
G
----
C
P
---------
R
E
V
Q
R
G
F
A
A
T
L
VT
E
A
E
C
N
L
A
T
ISGV
A
-
E
---------
C
P
WILG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
HHSearch
58.99
28%
-59
- C1 -
1BEA
-
ITRF_MAIZE
A:
[14-109]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
N
P
L
P
S
C
R
W
Y
V
T
S
R
TC
G
-
I
----
G
P
R
-------
L
-------
P
W
P
E
L
K
----
R
R
C
C
R
E
L
A
D
-
I
P
------------
A
----------
Y
---
C
R
C
-----------------
T
---------
A
--
L
S
I
L
M
D
G
--------
A
I
P
P
G
-
P
D
A------
Q
-
L
E
G
R
L
E
D
LPGCP
R
E
V
Q
R
G
F
A
A
T
L
VT----
E
A
E
C
N
L
A
T
----
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
55.21
24%
-52
- C1 -
1BWO
2
NLTP1_WHEAT
A:
[2-78]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
C
----
G
H
V
D
S
L
V
R
P
C
L
S
Y
V
Q
----
G
-
G
------
P
-------
G
-------
P
----
S
----
G
Q
C
C
D
G
V
K
N
-
L
H
------------
N
Q
ARS
Q
S
D
R
Q
S
A
---
C
N
C
-----------------
L
---------
K
--
G
-----
I
--------
A
---
R
-
G
I
-------
H
-
N
----
L
N
---------
E
D
N
A
R
S
I
------
P
P
K
C
G
V
N
L
----
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
SP3
54.76
24%
-97
- C1 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
C
----
N
A
G
Q
--
L
T
V
C
T
G
A
I
A
----
G
-
G
----
A
R
----------------
P
----
T
----
A
A
C
C
S
S
L
R
A
-
Q
Q
-----------------------
G
---
C
F
C
-----------------
Q
---------
F
A
K
D
-----
P
--------
R
---
Y
-
G
R
-------
Y
------
V
N
---------
S
P
N
A
R
K
A
------
V
S
S
C
G
I
A
L
----
P
-
T
---------
C
H
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
HHSearch
54.14
15%
-73
- C1 -
2LVF
-
?
A:
[16-105]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
M
L
S
H
C
R
M
Y
M
R
Q
Q
M
E
E
-
S
T---
Y
Q
T
-------
M
PRRGMEP
H
----
M
----
S
E
C
C
E
Q
L
E
G
-
M
D
------------
E
----------
S
---
C
R
C
-----------------
E
---------
G
--
L
-----
R
M
-------
M
---
M
-
R
M
M
Q
Q
K
EM
Q
P
R
G
E
Q
M
R
R
M
---------
M
R
L
A
E
N
I
------
P
S
R
C
N
L
S
P
----
M
-
R
---------
C
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
Fugue
52.37
26%
-69
- C1 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
C
----
N
--
A
G
Q
L
T
V
C
T
G
A
I
A
----
G
-
G
----
A
R
P
-------
T
-----------------
A
A
C
C
S
S
L
R
--
A
Q
------------
Q
----------
G
---
C
F
C
-----------------
Q
---------
F
--
A
-----
K
--------
D
---
P
-
R
Y
-------
G
-
R
Y---
V
N
---------
S
P
N
A
R
K
A
------
V
S
S
C
G
I
A
L
----
P
-
T
---------
C
H
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
51.97
22%
-83
- C1 -
1S6D
-
2SS8_HELAN
A:
[20-101]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
L
N
H
C
G
M
Y
L
M
----
K
-
N
LGER
S
Q
V
SPR
M
R
E
E
D
-------
H
----
K
----
Q
L
C
C
M
Q
L
K
N
-
L
D
------------
E
----------
K
---
C
M
C
-----------------
P
---------
A
--
I
-----
M
M
-------
M
---
L
-
N
E
P------
M
W
I
RMR
D
Q
V
---------
M
S
M
A
H
N
L
------
P
I
E
C
N
L
M
S
----
Q
-
P
---------
C
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
51.62
26%
-82
- C1 -
1L6H
-
NLTPX_ORYSJ
A:
[2-68]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
C
----
N
A
G
--
Q
L
T
V
C
T
G
A
I
A
----
G
-
G
------
A
-------
R
-------
P
----
T
----
A
A
C
C
S
S
L
R
A
-
Q
-------------
Q
----------
G
---
C
F
C
-----------------
Q
---------
F
--
A
-----
K
--------
D
---
P
R
Y
G
-------
R
-
Y
----
V
N
---------
S
P
N
A
R
K
A
------
V
S
S
C
G
I
A
L
----
P
-
T
---------
C
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
51.53
22%
-63
- C1 -
1HSS
-
IAA1_WHEAT
A:
[14-103]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
P
A
L
P
A
C
R
P
L
L
R
L
Q
C
N
G
S
Q
----
V
P
E
-------
A
-------
V
----
L
----
R
D
C
C
Q
Q
L
A
H
-
I
S
------------
E
----------
W
---
C
R
C
-----------------
G
---------
A
--
L
-----
Y
S
M
L
D
S
M
Y
K
E
---
H
-----------------
G
A
FPRCR
R
E
V
V
K
L
T
A
A
S
I
------
T
A
V
C
R
L
P
I
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
Fugue
50.50
16%
-101
- C1 -
2BVL
6
TOXB_CLODI
A:
[1-543]
MSLVN
R
K
Q
L
E
K
M
A
NVRFRTQE
D
E
Y
V
A
I
L
D
A
L
E
E
Y
H
N
MSENT
V
V
E
K
Y
L
K
L
K
D
I
N
S
L
T
D
I
C
I
D
T
Y
KKSGR
N
K
A
L
K
K
F
K
E
Y
L
V
T
E
V
L
E
L
K
N
N
NLTPVEK
N
L
H
F
V
W
I
GGQIN
D
T
A
I
N
Y
I
N
Q
W
K
D
V
N
SD
Y
N
V
N
V
F
Y
D
SNAFL
I
N
T
L
K
K
T
V
V
E
S
A
I
N
D
T
L
E
S
F
RENLNDPRFD
Y
N
K
F
F
R
K
R
M
E
I
I
Y
D
K
Q
K
N
F
I
N
Y
Y
K
A
Q
R
E
E
NPELI
I
D
D
I
V
K
T
Y
L
S
N
E
YSKE
I
D
E
L
N
T
Y
I
E
E
S
L
N
K
I
T
Q
N
SGNDVRNF
G
E
F
K
N
GES
F
N
L
Y
E
Q
E
L
VERWN
L
A
A
A
S
D
I
L
R
I
S
A
L
K
E
I
G
G
M
----
Y
L
D
V
D
M
L
P
G
I
Q
P
D
L
F
----
E
-
S
----
I
E
K
-------
P
-------
S
----
S
----
V
T
-
V
D
F
W
E
M
-
T
K
------------
L
----------
E
---
A
I
M
-----------------
K
---------
Y
--
K
-----
E
--------
Y
---
I
-
P
----------
E
----
Y
T
---------
S
E
H
F
D
M
L
------
D
E
E
V
Q
S
S
F
----
E
-
S
---------
V
L
A
S
KSDKSEIFSSL
G
D
M
E
A
S
PL
E
V
K
I
A
F
N
SKGIINQ
G
L
I
S
V
K
DS
Y
C
S
N
L
I
V
K
Q
I
E
N
R
Y
K
I
L
N
N
S
L
N
P
A
I
S
EDND
F
N
T
T
T
N
T
F
I
D
S
I
M
A
E
ANADN
G
R
F
M
M
E
L
G
KYLRVGFFPDVK
T
T
I
N
L
SG
P
E
A
Y
A
A
A
Y
Q
D
L
L
M
FKEGSMNIHLI
E
A
D
L
R
N
F
EISKTNISQST
E
Q
E
M
A
SLWSFD
D
A
R
A
K
A
Q
F
E
E
Y
K
R
N
Y
F
E
GAL
User Run . : Multi Template Modeling Result:
(4 SA)
.........10........20........30........40........50........60........70...
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
IPVCNIDT
N
D
L
A
KCRPAVTGNNPPPPG
P
D
C
C
A
V
A
R
VAN
L
Q
C
LCPYKPYLPTVGI
D
P
S
R
V
R
P
L
L
A
NCGVNSPSCF
42
89.48
100%
-144
- C- -
M042
-
A:
[1-122]
I
P
V
C
N
I
D
T
N
D
L
A
K
C
R
P
A
V
T
G
N
N
P
P
P
P
G
P
D
C
C
A
V
A
R
V
A
N
L
Q
C
L
C
P
Y
K
P
Y
L
P
T
V
G
I
D
P
S
R
V
R
P
L
L
A
N
C
G
V
N
S
P
S
C
F
44
85.69
100%
-133
- C- -
M044
-
A:
[1-111]
I
P
V
C
N
I
D
T
N
D
L
A
K
C
R
P
A
V
T
G
N
N
P
P
P
P
G
P
D
C
C
A
V
A
R
V
A
N
L
Q
C
L
C
P
Y
K
P
Y
L
P
T
V
G
I
D
P
S
R
V
R
P
L
L
A
N
C
G
V
N
S
P
S
C
F
48
84.27
100%
-136
- C- -
M048
-
A:
[1-132]
I
P
V
C
N
I
D
T
N
D
L
A
K
C
R
P
A
V
T
G
N
N
P
P
P
P
G
P
D
C
C
A
V
A
R
V
A
N
L
Q
C
L
C
P
Y
K
P
Y
L
P
T
V
G
I
D
P
S
R
V
R
P
L
L
A
N
C
G
V
N
S
P
S
C
F
49
84.12
100%
-129
- C- -
M049
-
A:
[1-132]
I
P
V
C
N
I
D
T
N
D
L
A
K
C
R
P
A
V
T
G
N
N
P
P
P
P
G
P
D
C
C
A
V
A
R
V
A
N
L
Q
C
L
C
P
Y
K
P
Y
L
P
T
V
G
I
D
P
S
R
V
R
P
L
L
A
N
C
G
V
N
S
P
S
C
F