@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 188_tI_ARATH: (2014-05-03 )
VYRPWPSECVEVANVMVEQCKMFFVHQESPPTAECCRWFSSRRKYAKERRRLCRCLEFLTTAFKNLKPDVLALSDQCHFSSGFPMSRDHTCA
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10..-.--.-.-...20......---------------------.-----------------.------------30........40...------.---.---.---..50.---..------...--..------60-..------------...-..----.-70.-....-----...80---.---..--....-----.---90.--------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VYRP
W
P
S
E
C
V
E
V
A
-
N
--
V
-
M
-
V
E
Q
C
K
M
F
F
V
HQ---------------------E-----------------S------------P
P
T
A
E
C
C
R
W
F
S
S
R
R
K
------
Y
---
A
---
K
---
E
R
R
R
L
---
C
R
------
C
L
E
--
F
L
------
T
T
-
A
F
------------
K
NL-KP----
D
-
V
L
A
-LSDQ-----CHFSS---G---FP--MSRD-----H---TCA--------------------------------
2
HHSearch
94.15
26%
-106
- C1 -
1AFH
-
NLTP_MAIZE
A:
[3-90]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
C
G
Q
V
A
-
S
--
A
---
I
A
P
C
I
S
Y
A
R
G
Q
---------------------
G
-----------------
S
------------
G
P
S
A
G
C
C
S
G
V
R
S
L
N
N
------
A
---
A
---
R
T
T
A
D
R
R
A
A
---
C
N
------
C
L
K
--
N
A
------
A
A
-
G
V
------------
S
G
L
-
N
A
----
G
N
A
A
S
-
I
P
S
K
-----
C
G
V
S
I
---
P
---
Y
T
--
I
S
T
S
-----
T
---
D
C
S
--------------------------------
26
SP3
93.39
23%
-112
- C1 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
S
C
G
Q
V
A
-
S
--
A
-
I
--
A
P
C
I
S
Y
A
R
G
Q
---------------------
G
-----------------
S
------------
G
P
S
A
G
C
C
S
G
V
R
S
L
N
N
------
A
ART
T
---
A
---
D
R
R
A
A
---
C
N
------
C
L
K
--
N
A
------
A
A
-
G
V
------------
S
G
L
-
N
A
----
G
-
N
A
A
S
I
P
S
K
-----
C
G
V
S
I
---
P
---
Y
T
--
I
S
T
S
-----
T
---
D
C
S
RVN-----------------------------
5
HHSearch
92.00
22%
-130
- C1 -
2ALG
2
NLTP1_PRUPE
A:
[3-88]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
C
G
Q
V
S
-
S
--
S
---
L
A
P
C
I
P
Y
V
R
G
G
---------------------------------------
G
------------
A
V
P
P
A
C
C
N
G
I
R
N
V
N
N
------
L
---
A
---
R
T
T
P
D
R
Q
A
A
---
C
N
------
C
L
K
--
Q
L
------
S
A
-
S
V
------------
P
G
V
-
N
P
----
N
N
A
A
A
-
L
P
G
K
-----
C
G
V
S
I
---
P
---
Y
K
--
I
S
A
S
-----
T
---
N
C
---------------------------------
4
HHSearch
88.33
23%
-121
- C1 -
1SIY
-
NLTP1_VIGRR
A:
[3-88]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
G
Q
V
Q
-
G
--
N
-
L
--
A
Q
C
I
G
F
L
Q
K
G
---------------------------------------
G
------------
V
V
P
P
S
C
C
T
G
V
K
N
I
L
N
------
S
---
S
RTT
A
---
D
R
R
A
V
---
C
S
------
C
L
K
--
A
A
------
A
G
-
A
V
------------
R
G
I
-
N
P
----
N
N
A
E
A
-
L
P
G
K
-----
C
G
V
N
I
---
P
---
Y
K
--
I
S
T
S
-----
T
---
N
C
N
--------------------------------
1
HHSearch
86.20
21%
-118
- C1 -
1BWO
2
NLTP1_WHEAT
A:
[2-87]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
C
G
H
V
D
-
S
--
L
-
V
--
R
P
C
L
S
Y
V
Q
G
G
---------------------------------------
P
------------
G
P
S
G
Q
C
C
D
G
V
K
N
L
H
N
------
Q
---
A
RS
Q
S
---
D
R
Q
S
A
---
C
N
------
C
L
K
--
G
I
------
A
R
-
G
I
------------
H
N
L
-
N
E
----
D
N
A
R
S
-
I
P
P
K
-----
C
G
V
N
L
---
P
---
Y
T
--
I
S
L
N
-----
I
---
D
C
---------------------------------
6
HHSearch
85.01
20%
-116
- C1 -
1T12
-
NLTP1_TOBAC
A:
[3-88]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
C
G
Q
V
T
-
S
--
N
---
L
A
P
C
L
A
Y
L
R
N
----------------------
T
-----------------
G
-------------
P
L
G
R
C
C
G
G
V
K
A
L
V
N
------
S
---
A
---
R
T
T
E
D
R
Q
I
A
---
C
T
------
C
L
K
--
S
A
------
A
G
-
A
I
------------
S
G
I
-
N
L
----
G
K
A
A
G
-
L
P
S
T
-----
C
G
V
N
I
---
P
---
Y
K
--
I
S
P
S
-----
T
---
D
C
S
--------------------------------
18
Fugue
77.87
16%
-108
- C1 -
1W2Q
-
CONG_ARAHY
A:
[1-127]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GPMRRER
G
R
Q
G
D
S
S
S
C
E
R
Q
V
-
D
--
R
-
V
N
L
K
P
C
E
Q
H
I
M
Q
R
---------------------
I
MGEQEQYDSYDIRSTR
S
S
------------
D
Q
Q
Q
R
C
C
D
E
L
N
E
M
E
N
------
T
---
Q
---
G
-----------
C
M
------
C
E
A
--
L
Q
------
Q
I
-
M
E
N
Q
CDRLQDRQMV
Q
Q
F
-
K
R
----
E
-
L
M
S
-
L
P
Q
Q
-----
C
N
F
R
A
---
P
QRC
D
L
--
D
V
S
G
-----
G
---
R
C
S
--------------------------------
22
Fugue
68.57
15%
-111
* C1 *
1S6D
-
2SS8_HELAN
A:
[1-103]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P
Y
G
R
G
R
T
E
S
G
C
Y
Q
Q
M
-
E
E
A
E
-
M
-
L
N
H
C
G
M
Y
L
M
K
N
---------------------
L
-----------------
G
ERSQVSPR
M
R
E
E
D
H
K
Q
L
C
C
M
Q
L
K
N
L
D
E
------
K
---
C
---
M
-----------
C
P
------
A
I
M
--
M
M
L
N
EPMW
I
R
-
M
R
------------
D
Q
V
-
M
S
----
M
-
A
H
N
-
L
P
I
E
-----
C
N
L
M
S
--------------------
Q
---
P
C
Q
M-------------------------------
23
Fugue
62.28
21%
-54
- C1 -
1V74
-
IMMD_ECOLX
B:
[1-87]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
N
K
-
M
--
A
-
M
-
I
D
L
A
K
L
F
L
A
S
K
---------------------
I
-----------------
T
--------------------
A
I
E
F
S
E
R
------
I
---
C
---
V
---
E
R
R
R
L
-------------------------
Y
-
G
V
------------
K
D
L
-
S
P
----
N
-
I
L
N
-
C
G
E
E
-----
L
F
M
A
A
---
E
----
R
--
F
E
P
D
-----
A
---
D
R
A
NYEID
D
N
G
L
K
V
E
V
R
S
I
L
E
K
F
KL----------
7
HHSearch
62.19
20%
-89
- C1 -
2RKN
2
DIRL1_ARATH
A:
[5-72]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
G
M
S
Q
-
D
--
E
---
L
N
E
C
K
P
A
V
S
K
E
---------------------
N
P----------------
T
------------
S
P
S
Q
P
C
C
T
A
L
Q
H
A
--------------------
D
F
A
C
L
---
C
G
------
Y
K
N
--
S
P
------
W
L
-
G
S
------------
F
G
V
-
D
P
----
E
L
A
S
A
-
L
P
K
Q
-----
C
G
L
A
------------------------------------------------------------
17
Fugue
61.97
17%
-58
- C1 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
D
L
C
G
M
S
Q
-
D
--
E
-
L
-
N
E
C
K
P
A
V
S
K
E
N
---------------------
P
-----------------
T
------------
S
P
S
Q
P
C
C
T
A
L
Q
H
A
--------------------
D
F
A
C
L
---
C
G
------
Y
K
N
--
S
P
------
W
L
-
G
S
------------
F
G
V
D
P
E
----
L
-
A
S
A
-
L
P
K
Q
-----
C
G
--------------
L
A
N
A
-----
P
---
T
C
---------------------------------
21
Fugue
58.24
11%
-78
- C1 -
1PSY
-
2SS_RICCO
A:
[1-125]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
E
F
M
E
S
K
G
E
R
E
G
S
S
S
Q
Q
C
R
Q
E
V
Q
R
--
K
-
D
-
L
S
S
C
E
R
Y
L
R
Q
S
S
S
R
R
S
T
GEEVLRMPGDENQQQ
E
-----------------
S
------------
Q
Q
L
Q
Q
C
C
N
Q
V
K
Q
V
R
D
EC
Q
C
E
A
I
---
K
---
Y
---
I
A
E
D
Q
---
I
Q
------
Q
G
Q
--
L
H
------
G
E
-
E
S
------------
E
R
V
-
A
Q
----
R
-
A
G
E
-
I
V
S
S
-----
C
G
V
R
---------
C
--
M
R
Q
T
-----
R
---
T
N
---------------------------------
24
Fugue
50.32
16%
-74
- C1 -
1EUV
-
SMT3_YEAST
B:
[20-98]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
E
T
H
I
N
L
--
K
--
V
-
S
-
D
G
S
S
E
I
F
F
K
I
K
---------------------
K
-----------------
T
------------
T
P
L
R
R
L
M
E
A
F
A
K
R
Q
G
------
K
---
E
---
M
---
D
S
------
L
R
------
F
L
Y
--
D
G
------
I
R
-
I
Q
------------
A
D
Q
-
T
P
----
E
-
D
L
D
-
M
E
D
N
---------
D
---
I
---
I
E
--
A
H
R
E
-----
Q
---
I
G
G
--------------------------------
28
SP3
47.43
18%
-64
* C2 *
1IM3
-
US02_HCMVA
D:
[1-95]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
W
F
Q
--
I
E
D
N
-
R
--
C
-
Y
-
I
D
N
G
K
L
F
A
R
G
S
---------------------
I
-----------------
V
------------
G
N
M
S
R
F
V
--
F
D
P
K
A
D
------
Y
---
G
---
G
---
V
G
E
N
L
Y
V
H
A
D
------
D
V
E
--
F
V
---------
P
G
------------
E
S
L
-
K
W
----
N
-
V
R
N
-
L
D
V
M
-----
P
I
F
E
T
L
A
L
R
---
L
V
--
L
Q
G
D
-----
V
I
W
L
R
C
V
P
E
L-----------------------------
27
SP3
42.36
11%
-57
- C2 -
1EHX
-
?
A:
[1-94]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MQDP
T
I
N
P
-
T
S
I
S
A
K
A
G
-
S
--
F
-
A
-
D
T
K
I
T
L
----
T
---------------------
P
-----------------
N
------------
G
N
T
F
N
G
I
S
E
L
Q
S
S
Q
-------
Y
---
T
---
K
---
G
T
N
E
V
---
T
-------------
L
------
L
A
-
S
Y
------------
L
N
T
-
L
P
----
E
-
N
T
T
-
K
T
L
T
-----
F
D
F
G
V
---
G
--------
T
K
N
-----
P
---
K
L
T
I
T
V
L
PKDIPGLE--------------------
8
HHSearch
39.34
17%
-45
- C1 -
1L6H
-
NLTPX_ORYSJ
A:
[9-64]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
V
C
T
G
A
-
I
A
G
---------------------
G
-----------------
A
------------
R
P
T
A
A
C
C
S
S
L
R
A
-----------------------
Q
Q
G
---
C
F
------
C
Q
F
--
A
K
------
D
P
R
Y
G
------------
R
Y
V
-
N
S
----
P
N
A
R
K
-
A
V
S
S
-----
C
G
I
A
------------------------------------------------------------
33
SP3
39.02
13%
-45
- C2 -
2HFT
-
?
?:
[1-106]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
G
T
T
N
T
V
A
A
Y
-
N
--
L
T
W
-
K
S
T
N
F
K
T
I
L
E
W
---------------------
E
-----------------
P
------------
K
P
V
N
Q
--
V
Y
T
V
Q
I
S
T
------
K
---
S
---
G
---
D
W
K
S
K
---
C
F
YTTDTE
C
-
D
--
L
T
------
D
E
-
I
V
------------
K
D
V
-
K
Q
T
Y
L
A
R
-
V
F
S
-
Y
P
A
G
-----
N
V
E
S
T
---
E
---
P
L
Y
E
N
S
P
E
FTPYL
E
---
T
----------------------------------
11
HHSearch
38.60
15%
-62
- C1 -
1N89
1
NLT2G_WHEAT
A:
[9-63]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
C
A
S
A
-
I
L
S
---------------------
G
-----------------
A
------------
K
P
S
G
E
C
C
G
N
L
R
A
----------------------
Q
-
Q
G
---
C
F
------
C
Q
Y
--
A
K
------
D
P
-
T
Y
G
-----------
Q
Y
I
-
R
S
P
---
H
-
A
R
D
-
T
L
T
S
-----
C
G
L
A
------------------------------------------------------------
19
Fugue
36.72
17%
-40
- C1 -
3IJ6
-
?
A:
[3-305]
LTKIDA
Y
A
H
I
L
P
A
K
Y
Y
Q
K
M
L
S
V
EPN
I
P
N
M
F
PFIKIKTLMD
L
D
E
R
L
T
K
WPDQNTKQV
I
S
L
A
NISPEDFTD
S
K
T
S
A
E
L
C
Q
S
A
N
E
E
L
S
N
L
V
D
Q
H
PGKFA
G
A
V
A
I
L
PMNN
I
E
S
A
C
K
V
I
S
S
I
K
D
D
ENLV
G
A
Q
I
F
TRHLGKSIADKEF
R
P
V
L
A
Q
A
A
K
L
H
V
P
L
W
M
H
P
V
F
DARKPDNNLVF
S
W
E
Y
E
L
S
Q
A
M
L
Q
L
V
Q
S
D
L
F
Q
D
Y
P
-----------------
N
L
K
I
L
V
H
H
A
---------------------
G
-----------------
A
------------
M
V
P
------
F
F
S
G
R
I
------
D
---
H
---
I
---
L
D
E
K
H
---
A
Q
------
D
F
K
K
F
Y
V
------
D
T
-
A
I
------------
L
G
N
-
T
P
----
A
-
L
Q
L
-
A
I
D
Y
YGIDH
V
L
F
G
T
---
D
---
A
P
--
F
A
V
M
-----
P
---
S
G
A
D
Q
I
I
T
Q
A
I
N
D
LTIS
D
K
D
K
Q
K
I
F
H
D
N
Y
Y
S
L
I
KE
25
Fugue
35.10
26%
-61
- C1 -
2E2F
-
DIAP_GASAT
A:
[1-41]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
--
V
-
R
-
I
G
P
C
D
Q
V
C
-
P
R
---------------------
I
-----------------
V
------------
P
E
R
H
E
C
C
R
A
H
G
-
R
S
G
------
Y
---
A
---
Y
---
C
S
G
G
G
---
M
Y
------
C
N
---------------------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(3 SA)
.........10........20........30........40........50........60........70........80........90.
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
VYRP
W
P
S
E
C
V
E
V
A
N
V
M
V
E
Q
C
K
M
F
F
V
HQESP
P
T
A
E
C
C
R
W
F
S
S
R
R
K
Y
A
K
E
R
R
R
L
C
R
C
L
E
F
L
T
T
A
F
K
NLKP
D
V
L
A
LSDQCHFSSGFPMSRDHTCA
37
98.91
100%
-144
- C- -
M037
-
A:
[8-99]
-------
E
C
V
E
V
A
N
V
M
V
E
Q
C
K
M
F
F
V
H
Q
E
S
P
P
T
A
E
C
C
R
W
F
S
S
R
R
K
Y
A
K
E
R
R
R
L
C
R
C
L
E
F
L
T
T
A
F
K
N
L
K
P
D
V
L
A
L
S
D
Q
C
H
F
S
S
G
F
P
M
S
R
D
H
T
C
A
36
38.74
100%
27
- C- -
M036
-
A:
[6-103]
V
Y
R
P
W
P
S
E
C
V
E
V
A
N
V
M
V
E
Q
C
K
M
F
F
V
H
Q
E
S
P
P
T
A
E
C
C
R
W
F
S
S
R
R
K
Y
A
K
E
R
R
R
L
C
R
C
L
E
F
L
T
T
A
F
K
N
L
K
P
D
V
L
A
L
S
D
Q
C
H
F
S
S
G
F
P
M
S
R
D
H
T
C
A
39
37.02
100%
51
- C- -
M039
-
A:
[6-103]
V
Y
R
P
W
P
S
E
C
V
E
V
A
N
V
M
V
E
Q
C
K
M
F
F
V
H
Q
E
S
P
P
T
A
E
C
C
R
W
F
S
S
R
R
K
Y
A
K
E
R
R
R
L
C
R
C
L
E
F
L
T
T
A
F
K
N
L
K
P
D
V
L
A
L
S
D
Q
C
H
F
S
S
G
F
P
M
S
R
D
H
T
C
A