@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 639_tV_THECC: (2014-05-12 )
YGPCGKHDIEKEAEKLAPCTKAAQYLEAPVSKRCCTVMEKKLKNPDCLCAIMFSHTARSAGVNPEVAVTIPKRCNIPVRPVGHKCGAFPLV
Atome Classification :
(20 SA)
-----------------------------------------------------------------------------....-----.....10..--......20.-----..-.---.-------.-----------------.---------------.-----------------30...--.....40.---.--------.--------.---....50---------------.-------..-------..---..---------.------.------------60-----------.---------.---.-.-.....70----------...-...-.------.-----------.-80-.--.-----.......---90-------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------YGPC-----GK
H
D
I
E
K
E
A
--
E
K
LA
P
C
T
K
A
-----
A
Q
-
Y
---
L
-------E-----------------A---------------
P
-----------------
V
S
K
R
C
--
C
T
V
M
E
K
KL---K--------
N
--------
P
---
D
C
L
C
A
----------------
I
-------
M
F
-------SH---TA---------R------S------------A------------G---------V---N-P-
E
V
A
V
TI-----------PKR-CNI-P------V-----------R-P--V--G-----HKCGAFP---LV-------------------------------------------------------------------------------------------------------
8
Fugue
81.24
20%
-100
- C3 -
1HSS
-
IAA1_WHEAT
A:
[5-124]
-------------------------------------------------------------------------------
M
C
------
Y
P
G
Q
A
F
Q
V
--
P
A
L
P
A
C
R
P
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-----
L
R
-
L
---
Q
C
N
GSQVP------------------
E
---------------
A
-----------------
V
L
R
D
C
--
C
Q
Q
L
A
H
I
-------------
S
--------
E
---
W
C
R
C
G
----------------
A
-------
L
Y
-------
S
M
---
L
D
---------
S
-------
M
Y
K
E
HGAFPRCR
R
------------
E
---------
V
---
V
-
K
-
L
T
A
A
S
I
-----------
T
A
-V
C
R
L
-
P
------
I
V
VDASGDG---
A
-
Y
--
V
--
C
-----
K
D
V
A
A
Y
P
---
D
A
-------------------------------------------------------------------------------------------------------
11
SP3
80.02
18%
-88
- C3 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
---------------------------------------------------------------------------------------
A
I
S
C
G
Q
V
A
--
S
A
I
A
P
C
I
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Y
-----
A
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-
G
---
Q
-------
G
-----------------
S
---------------
G
-----------------
P
S
A
G
C
--
C
S
G
V
R
S
L
N
N
A
A
R
--------
T
--------
T
A
D
R
R
A
A
C
N
----------------
C
-------
L
K
-------
N
A
---
A
A
---------
G
------
V
------------
S
------------
G
---------
L
---
N
-
A
-
G
N
A
A
S
I
-----------
P
S
K
-
C
G
V
-
S
-----------------------
I
--
P
-----
Y
T
I
S
T
S
T
DCS
R
V
N------------------------------------------------------------------------------------------------------
35
HHSearch
79.98
22%
-139
* C3 *
1HSS
-
IAA1_WHEAT
A:
[16-106]
--------------------------------------------------------------------------------------------------
A
L
P
A
C
R
P
L
-----
L
R
-
L
---
Q
C
N
GS---
Q
-----------------
V
P
E
-------------
A
-----------------
V
L
R
D
C
--
C
Q
Q
L
A
H
I
-------------
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--------
E
---
W
C
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C
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----------------
A
-------
L
Y
-------
S
M
---
L
D
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M
Y
------
K
------
E
------------
H
-------------GAFPRCR
R
E
V
---
V
-
K
-
L
T
A
A
S
I
-----------
T
A
V
-
C
R
L
-
P
------
I
-----------
V
-
V
--
D
---------------------------------------------------------------------------------------------------------------------------
25
HHSearch
75.52
22%
-81
- C3 -
1T12
-
NLTP1_TOBAC
A:
[2-89]
----------------------------------------------------------------------------------------
I
T
C
G
Q
V
T
--
S
N
L
A
P
C
L
A
Y
-----
L
R
-
N
---
T
-------
G
---------------------------------------------------
P
L
G
R
C
--
C
G
G
V
K
A
L
V
---
N
--------
S
A
RT
T
E
D
R
Q
I
---
A
C
T
C
-------------------------
L
K
-------
S
----
A
A
---------
G
------
A
------------
I
S-----------
G
---------
I
---
N
-
L
-
G
K
A
A
G
L
-----------
P
S
T
-
C
G
V
-
N
------
I
-----------
P
Y
K
IS
P
--
S
-----
T
D
C
S
K
--------------------------------------------------------------------------------------------------------------
23
HHSearch
74.48
23%
-70
- C3 -
1AFH
-
NLTP_MAIZE
A:
[3-91]
-----------------------------------------------------------------------------------------
S
C
G
Q
V
A
--
S
A
I
A
P
C
I
S
Y
-----
A
R
-
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---
Q
-------
G
-----------------
S
---------------
G
-----------------
P
S
A
G
C
--
C
S
G
V
R
S
L
N
---
N
A
A
R-----
T
T
A
D
R
R
---
A
---
A
C
N
C
-------------------------
L
K
-------
N
----
A
A
---------
A
------
G
------------
V
S-----------
G
---------
L
---
N
-
A
-
G
N
A
A
S
I
-----------
P
S
K
-
C
G
V
-
S
------
I
-----------
P
Y
T
I
S
T
--
S
-----
T
D
C
S
R
--------------------------------------------------------------------------------------------------------------
24
HHSearch
73.62
25%
-75
- C3 -
1SIY
-
NLTP1_VIGRR
A:
[2-89]
-----------------------------------------------------------------------------------------
T
C
G
Q
V
Q
--
G
N
L
A
Q
C
I
G
F
-----
L
Q
-
K
---
G
-------------------------
G
---------------
V
-----------------
V
P
P
S
C
--
C
T
G
V
K
N
I
L
---
N
SSRTTADR
R
--------
A
---
V
C
S
C
-------------------------
L
K
-------
A
----
A
A
---------
G
------
A
------------
V
R-----------
G
---------
I
---
N
-
P
-
N
N
A
E
A
L
-----------
P
G
K
-
C
G
V
-
N
------
I
-----------
P
Y
K
--
I
ST
S
-----
T
N
C
N
S
--------------------------------------------------------------------------------------------------------------
1
Fugue
73.21
32%
-56
- C3 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
----------------------------------------------------------------------------A
I
D
L
C
-----
G
M
-----
S
Q
--
D
E
L
N
E
C
K
P
A
-----
V
S
K
E
---
N
-------
P
-----------------
T
---------------
S
-----------------
P
S
Q
P
C
--
C
T
A
L
Q
H
A
-------------
D
--------
F
---
A
C
L
C
G
----------------
Y
-------
K
N
-------
S
P
---
W
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---------
G
------
S
------------
F
------------
G
---------
V
---
D
-
P
-
E
L
A
S
A
L
-----------
P
K
Q
-
C
G
L
-
A
------
N
-----------
A
-
P
------------
T
C
----------------------------------------------------------------------------------------------------------------
26
HHSearch
63.94
22%
-83
- C3 -
1BWO
2
NLTP1_WHEAT
A:
[2-78]
-----------------------------------------------------------------------------------------
D
C
G
H
V
D
--
S
L
V
R
P
C
L
S
Y
-----
V
Q
-
G
---
G
-------------------------
P
---------------
G
-----------------
P
S
G
Q
C
--
C
D
G
V
K
N
L
H
---
N
Q
AR-----
S
Q
S
D
R
Q
---
S
---
A
C
N
C
L
----------------
K
-------
G
I
-------
A
---------------
R
------
G
------------
I
H-----------
N
---------
L
---
N
-
E
-
D
N
A
R
S
I
-----------
P
P
K
-
C
G
V
-
N
------
L
-----------
P
--------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
63.58
28%
-53
- C3 -
2RKN
2
DIRL1_ARATH
A:
[1-75]
--------------------------------------------------------------------------------------
A
I
D
L
C
G
M
S
Q
--
D
E
L
N
E
C
K
P
A
-----
V
S
-
K
---
E
-------
N
P----------------
T
---------------
S
-----------------
P
S
Q
P
C
--
C
T
A
L
Q
H
A
-------------
D
--------
F
---
A
C
L
C
G
----------------
Y
-------
K
N
-------
S
P
---
W
L
---------
G
------
S
------------
F
------------
G
---------
V
---
D
-
P
-
E
L
A
S
A
L
-----------
P
K
Q
-
C
G
L
-
A
------
N
-----------
A
-
P
------------------------------------------------------------------------------------------------------------------------------
41
HHSearch
63.57
20%
-113
- C3 -
1B1U
-
IAAT_ELECO
A:
[16-114]
--------------------------------------------------------------------------------------------------
P
L
D
S
C
R
W
Y
-----
V
S
-
T
---
R
T
CGVGP-
R
-----------------
L
A
T
Q
------------
E
-----------------
M
K
A
R
C
--
C
R
Q
L
E
A
I
-------------
P
--------
A
---
Y
C
R
C
E
----------------
A
-------
V
R
-------
I
L
M
D
G
V
V
---------
T
------
P
------------
S
G
Q
H
E
G
RLLQDLP
G
CP
R
Q
-----
V
Q
--
R
A
F
-
A
P
K
L
V
T
-----------
E
V
E
-
C
N
L
-
A
------
T
-----------
I
-
H
--
G
--
G
-----
P
F
C
----------------------------------------------------------------------------------------------------------------
39
HHSearch
62.45
21%
-115
- C3 -
1BEA
-
ITRF_MAIZE
A:
[16-109]
--------------------------------------------------------------------------------------------------
P
L
P
S
C
R
W
Y
-----
V
T
-
S
---
R
TCGIGP-
R
-----------------
L
---------------
P
W
P
E
--------------
L
K
R
R
C
--
C
R
E
L
A
D
I
-------------
P
--------
A
---
Y
C
R
C
T
----------------
A
-------
L
S
-------
I
L
M
D
G
A
I
---------
P
------
P
G
PDAQL
E
G
R
---
L
------------
E
D
LPGCP
R
E
-
V
---
Q
-
R
-
G
F
A
A
T
L
VT---------
E
A
E
-
C
N
L
-
A
------
T
-----------
I
--------------------------------------------------------------------------------------------------------------------------------
38
HHSearch
61.46
19%
-119
- C3 -
1SM7
-
?
A:
[14-100]
--------------------------------------------------------------------------------------------------
H
L
R
A
C
Q
Q
W
-----
I
R
-
Q
---
Q
-------
L
-----------------
A
G
S
P
F
S
E
NQWGPQQGP
S
-----------------
L
R
E
Q
C
--
C
N
E
L
Y
Q
E
-------------
D
--------
Q
---
V
C
V
C
P
----------------
T
-------
L
K
-------
Q
A
---
A
K
---------
S
V
RVQ--
G
Q-----------
H
------------
G
PFQST----
R
---
I
-
Y
-
Q
I
A
K
N
L
-----------
P
N
V
-
C
N
M
-
K
------
Q
--------------------------------------------------------------------------------------------------------------------------------------------
34
HHSearch
61.19
17%
-103
- C3 -
1W2Q
-
CONG_ARAHY
A:
[16-112]
------------------------------------------------------------------------------------------
C
E
R
Q
V
D
R
V
N
L
K
P
C
E
Q
H
-----
I
M
-
Q
---
R
-------
I
-----------------
M
---------------
G
EQEQYDSYDIRSTR
S
S
D
Q
Q
Q
R
C
--
C
D
E
L
N
E
M
E
---
N
--------
T
--------
Q
---
G
C
M
C
E
----------------
A
-------
L
Q
-------
Q
I
---
M
E
N
Q
C------
D
------
R
L-----------
Q
------------
D
RQ-------
M
V
Q
Q
F
-
K
-
R
E
L
M
S
L
-----------
P
Q
Q
-
C
N
F
-
R
---------------------------------------------------------------------------------------------------------------------------------------------------
27
HHSearch
60.87
25%
-89
- C3 -
2ALG
2
NLTP1_PRUPE
A:
[3-79]
-----------------------------------------------------------------------------------------
T
C
G
Q
V
S
--
S
S
L
A
P
C
I
P
Y
-----
V
R
-
G
---
G
-------------------------
G
---------------
A
-----------------
V
P
P
A
C
--
C
N
G
I
R
N
V
N
---
N
L
A
RT
T
P
D
R
Q
--------
A
---
A
C
N
C
-------------------------
L
K
-------
Q
----
L
S
---------
A
------
S
------------
V
P-----------
G
---------
V
---
N
-
P
-
N
N
A
A
A
L
-----------
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G
K
-
C
G
V
-
S
------
I
-----------
P
--------------------------------------------------------------------------------------------------------------------------------
5
Fugue
60.73
16%
-86
- C3 -
1W2Q
-
CONG_ARAHY
A:
[1-127]
--------------------------------------------------------------------GPMRRERGR
Q
G
D
S
-----
S
S
C
E
R
Q
V
D
R
--
V
N
L
K
P
C
E
Q
H
-----
I
M
-
Q
---
R
-------
I
MGEQEQYDSYDIRSTR
S
S
---------------
D
-----------------
Q
Q
Q
R
C
--
C
D
E
L
N
E
M
E
---
N
--------
T
--------
Q
---
G
C
M
C
E
----------------
A
-------
L
Q
-------
Q
I
---
M
E
N
Q
CDRLQDR
Q
------
M
------------
V
------------
Q
---------
Q
---
F
-
K
-
R
E
L
M
S
L
-----------
P
Q
Q
-
C
N
F
-
R
APQRCD
L
-----------
D
-
V
--
S
--
G
-----
G
R
C
S
---------------------------------------------------------------------------------------------------------------
16
SP3
59.72
19%
-104
- C3 -
1OCX
-
MAA_ECOLI
A:
[1-182]
--------------------------------------------ST
E
K
E
K
M
I
A
GELYRSAD
E
T
L
S
R
D
R
L
R
A
R
Q
L
I
H
R
Y
N
H
S
-----
L
A
E
E
H
T
L
R
Q
--
Q
I
L
A
D
L
F
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-----
V
T
-
E
---
A
-------
Y
-----------------
I
---------------
E
-----------------
P
T
F
R
C
DY
G
Y
N
I
F
-
L
G
---
N
--------
N
F
F
A
N
----
F
---
D
C
V
M
L
DVCPI
R
I
G
D
N
C
M
L
A
P
G
V
-------
H
I
Y
T
A
T
H
P
I
D
P
---
V
A
---------
R
------
N
------------
S
------------
G
---------
A
---
E
-
L
-
G
K
P
V
T
I
-----------
G
N
N
-
V
W
I
G
G
------
R
-----------
A
-
V
--
I
N
P
G
-----
V
T
I
G
D
N
V
---
V
V
A
SGAVVT
K
D
V
P
D
N
V
V
V
G
G
NPARIIKKL----------------------------------------------------------------------------
29
HHSearch
56.84
23%
-90
- C3 -
1N89
1
NLT2G_WHEAT
A:
[5-64]
-------------------------------------------------------------------------------------------------
S
Q
L
A
V
C
A
S
A
-----
I
L
-
S
---
G
-------------------------
A
---------------
K
-----------------
P
S
G
E
C
--
C
G
N
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R
A
Q
-------------
Q
------------
G
C
F
C
Q
----------------
Y
-------
A
K
-------
D
P
---
T
Y
---------
G
------
Q
-------------------------
Y
---------
I
---
R
-
S
-
P
H
A
R
D
T
-----------
L
T
S
-
C
G
L
-
A
------
V
--------------------------------------------------------------------------------------------------------------------------------------------
40
HHSearch
56.22
24%
-70
- C3 -
2LVF
-
?
A:
[16-101]
-------------------------------------------------------------------------------------------------
Q
M
L
S
H
C
R
M
Y
-----
M
R
-
Q
Q
M
E
E
-------
S
-----------------
T
YQTMPRRGME-----
P
-----------------
H
M
S
E
C
--
C
E
Q
L
E
G
M
-------------
D
--------
E
---
S
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R
C
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----------------
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-------
L
R
-------
M
M
---
M
R
---------
M
M
Q
Q
K
EM
Q
------------
P
R
-----------
G
E
Q
M
R
-----
R
---
M
-
M
-
R
L
A
E
N
I
-----------
P
S
R
-
C
N
L
-
S
---------------------------------------------------------------------------------------------------------------------------------------------------
13
SP3
53.51
18%
-78
- C3 -
1EFP
-
ETFA_PARDE
A:
[1-183]
--------------------------------------------------A
V
L
L
L
G
EVTNGALN
R
D
A
T
A
K
A
V
A
A
V
KA
L
G
D
V
T
V
L
C
A
G
-
A
S
A
K
A
A
A
--
E
E
A
A
K
I
A
G
V
A
K
V
L
V
A
E
-
D
---
A
LY-----
G
-----------------
H
---------------
R
-----------------
L
A
E
P
T
--
A
A
L
I
V
G
L
A
---
G
--------
D
--------
Y
---
S
---
H
----------------
I
-------
A
A
-------
P
A
---
T
T
---------
D
------
A
------------
K
------------
N
---------
V
---
M
-
P
-
R
V
A
A
L
L
------------
D
V
-
M
V
L
-
S
------
D
VSAILDAD
T
F
E
R
-
P
--
I
YA
G
N
A
I
Q
V
V
K
S
K
D
A
K
---
K
V
F
T
I
RTASFDAAGEGGTA
P
V
T
E
T
A
A
A
A
D
PGL
S
S
W
V
A
D
E
V
A
E---------------------------------------------------------------
18
SP3
53.19
14%
-55
- C3 -
1GUY
1
MDH_CHLAA
A:
[1-306]
M
R
K
K
I
S
I
I
G
AG
F
V
G
S
T
T
A
H
W
L
A
A
K
EL
G
D
I
V
L
L
D
IVEG
V
P
Q
G
K
A
L
D
L
Y
E
A
SPIEG
F
D
V
R
V
T
G
T
NNYADTANSD
V
I
V
V
T
S
G
A
L
-----
I
K
V
N
A
D
I
T
R
--
A
C
I
S
Q
A
A
P
L
-----
S
P
-
N
---
A
V
I
I
M
---
V
-----------------
N
---------------
N
-----------------
P
L
D
A
M
--
T
Y
L
A
A
E
V
S
---
G
--------
F
--------
P
KE-
R
V
I
G
Q
----------------
A
G
V
L
D
A
A
R
Y
R
-------
T
F
---
I
A
---------
M
------
E
------------
A
------------
G
---------
V
---
S
-
V
E
D
V
Q
A
M
L
M
G
G
H
GDE
M
V
P
L
P
R
F
-
S
T
I
-
S
------
G
-----------
I
-
P
--
V
--
S
-----
E
F
I
A
P
D
R
---
L
A
Q
I
V
E
R
T
R
K
G
G
G
E
I
V
N
L
L
K
TGSAY
Y
A
P
A
A
A
T
A
Q
M
V
E
A
V
L
K
DKK
R
V
M
P
V
AAYLTGQYGLNDIY
F
G
V
P
V
ILGAGGVE
K
I
L
E
L
PLN
E
E
E
M
A
L
L
N
A
S
A
K
A
V
R
A
T
L
D
T
L
User Run . : Multi Template Modeling Result:
(4 SA)
.........10........20........30........40........50........60........70........80........90
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
YGPCGK
H
D
I
E
K
E
A
E
K
LA
P
C
T
K
A
A
Q
Y
L
EA
P
V
S
K
R
C
C
T
V
M
E
K
KLK
N
P
D
C
L
C
A
I
M
F
SHTARSAGVNP
E
V
A
V
TIPKRCNIPVRPVGHKCGAFPLV
46
94.52
100%
-97
- C- -
M046
-
A:
[1-136]
Y
G
P
C
G
K
H
D
I
E
K
E
A
E
K
L
A
P
C
T
K
A
A
Q
Y
L
E
A
P
V
S
K
R
C
C
T
V
M
E
K
K
L
K
N
P
D
C
L
C
A
I
M
F
S
H
T
A
R
S
A
G
V
N
P
E
V
A
V
T
I
P
K
R
C
N
I
P
V
R
P
V
G
H
K
C
G
A
F
P
L
V
47
89.77
100%
-96
- C- -
M047
-
A:
[1-136]
Y
G
P
C
G
K
H
D
I
E
K
E
A
E
K
L
A
P
C
T
K
A
A
Q
Y
L
E
A
P
V
S
K
R
C
C
T
V
M
E
K
K
L
K
N
P
D
C
L
C
A
I
M
F
S
H
T
A
R
S
A
G
V
N
P
E
V
A
V
T
I
P
K
R
C
N
I
P
V
R
P
V
G
H
K
C
G
A
F
P
L
V
42
39.65
100%
3
- C- -
M042
-
A:
[3-154]
Y
G
P
C
G
K
H
D
I
E
K
E
A
E
K
L
A
P
C
T
K
A
A
Q
Y
L
E
A
P
V
S
K
R
C
C
T
V
M
E
K
K
L
K
N
P
D
C
L
C
A
I
M
F
S
H
T
A
R
S
A
G
V
N
P
E
V
A
V
T
I
P
K
R
C
N
I
P
V
R
P
V
G
H
K
C
G
A
F
P
L
V
43
36.03
100%
25
- C- -
M043
-
A:
[3-154]
Y
G
P
C
G
K
H
D
I
E
K
E
A
E
K
L
A
P
C
T
K
A
A
Q
Y
L
E
A
P
V
S
K
R
C
C
T
V
M
E
K
K
L
K
N
P
D
C
L
C
A
I
M
F
S
H
T
A
R
S
A
G
V
N
P
E
V
A
V
T
I
P
K
R
C
N
I
P
V
R
P
V
G
H
K
C
G
A
F
P
L
V