@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Wbm0116: (2015-11-28 )
MGLLASLPEGHTIIGLQFENLMLNNRKSIPNILGIDEIISENLFFQRKTGNSAIYQIDYIIRTKFNTLYICEIKFSKNRIGHSIM
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10-.........20........30...---.-...-.40.-.----......50--------.........60--..-......--------.70------........80....--------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGLLASLPEG--
H
T
I
I
G
L
Q
F
E
N
L
MLNNRKSIPNIL
G
---
I
-
D
E
I
-
I
SEN-
L
----
F
F
Q
RKTG---------N
S
A
I
Y
Q
I
D
Y
I
---
I
R
-TKF
N
T
L
--------
Y
I
C
------
E
I
K
FSKNRIGHSIM--------------------------------------------------------
37
Fugue
79.21
27%
-68
* C4 *
1WK0
-
A:
[1-137]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GSSGSSGD
E
E
T
K
A
F
E
A
L
L
S
NIV
K
P
V
A
S
DIQAR
T
V
V
L
T
W
S
P
P
S
S
L
I
N
G
--
E
T
------------
D
E
S
S
V
P
E
L
Y
G
---
Y
-
E
V
L
-
I
S
S
------------
T
G
---------
K
D
G
K
Y
K
S
V
Y
V
---
G
E
-
E
T
N
I
T
L
N
DLKPA
M
D
Y
H
A
------
K
V
Q
A
E
Y
N
S
I
K
G
T
P
S
E
A
E
I
F
T
T
L
S
CEPDIPNPPRISGPSSG------------------------------
34
Fugue
67.61
25%
-32
* C2 *
2HEQ
-
YORP_BACSU
A:
[1-84]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
A
G
D
P
L
P
K
Y
W
--
S
Y
P
V
G
L
A
V
E
I
N
N
-
N
A
R
Y
G
C
P
H
H
V
G
---
R
-
K
G
K
-
I
I
E
H
-
L
--------------------
H
S
A
T
Y
--
D
Y
A
---
V
S
D
E
T
G
D
I
T
--------
Y
F
K
------
E
H
E
L
T
P
L
K
G
G
L
A
Y
V
LEHHHHHH------------------------------------------------
1
PsiBlast_PDB
66.95
30%
-85
- C3 -
3OND
1
SAHH_LUPLU
A:
[311-358]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
L
T
---
L
-
E
D
V
-
V
S
E
A
-
D
----
I
F
V
T
T
T
G
---------
N
K
D
I
I
M
L
D
H
M
---
K
K
-
M
K
N
N
A
I
---------
V
C
------
N
I
G
H
F
D
N
E
I
D
M
L
G
L
--------------------------------------------------------
3
PsiBlast_PDB
63.86
30%
-82
- C3 -
3ONF
1
SAHH_LUPLU
A:
[311-358]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
L
T
---
L
-
E
D
V
-
V
S
E
A
-
D
----
I
F
V
T
T
T
G
---------
N
K
D
I
I
M
L
D
H
M
---
K
K
-
M
K
N
N
A
I
---------
V
C
------
N
I
G
H
F
D
N
E
I
D
M
L
G
L
--------------------------------------------------------
2
PsiBlast_PDB
62.89
30%
-81
- C3 -
3ONE
1
SAHH_LUPLU
A:
[311-358]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
L
T
---
L
-
E
D
V
-
V
S
E
A
-
D
----
I
F
V
T
T
T
G
---------
N
K
D
I
I
M
L
D
H
M
---
K
K
-
M
K
N
N
A
I
---------
V
C
------
N
I
G
H
F
D
N
E
I
D
M
L
G
L
--------------------------------------------------------
28
HHSearch
61.48
19%
-78
- C5 -
1XMX
1
?
A:
[249-315]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
N
G
E
W
L
E
T
L
V
H
S
T
V
K
Q
I
Q
D
D
M
P
---
T
I
Q
D
R
S
L
N
V
Q
V
Y
----
R
Q
L
--
G
E
---------
R
E
V
R
N
E
L
D
V
A
---
T
V
-
V
N
-
N
K
L
--------
H
I
I
------
E
C
K
T
K
G
M
R
D
G
D
D
T
L
--------------------------------------------------------
39
Fugue
61.11
17%
-87
- C2 -
2HJQ
-
YQBF_BACSU
A:
[1-111]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
F
T
A
K
L
I
K
G
K
T
Y
N
V
M
G
I
T
F
R
A
---
G
V
S
Q
T
V
P
--
K
K
---
L
-
Y
E
Y
-
L
N
E
N
-
P
----
Y
F
I
L
T
Q
E
L
NNQKDDPI
N
Y
T
E
S
E
L
K
G
M
---
N
K
-
A
E
H
E
S
I
--------
I
S
N
L
GRNPS
D
F
K
N
A
D
E
R
I
A
Y
I
L
K
Q
I
D
N
KGELEHHHHHH-----------------------------------------
24
HHSearch
58.53
13%
-81
* C5 *
1Y88
5
Y1548_ARCFU
A:
[16-72]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
L
Y
F
Q
G
H
M
V
A
R
L
L
E
E
----
H
G
---
F
-
E
-
T
---
K
T
-
N
----
V
I
V
Q
G
-----------
N
C
V
E
Q
E
I
D
V
V
---
A
E
-
R
D
-
G
E
R
--------
Y
M
I
------
E
C
K
F
H
N
I
P
V
Y
T
G
L
K
--------------------------------------------------------
5
PsiBlast_PDB
58.03
28%
-98
- C3 -
1V8B
1
SAHH_PLAF7
A:
[302-339]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
V
V
T
---
L
-
D
E
I
-
V
D
K
G
-
D
----
F
F
I
T
C
T
G
---------
N
V
D
V
I
K
L
E
H
L
---
L
K
-
M
K
N
N
A
V
--------
V
G
N
------
I
G
H
F
D
D
E
I
Q
V
N
E
L
F
--------------------------------------------------------
40
Fugue
57.33
27%
-34
- C1 -
3T47
-
?
A:
[11-81]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
--
H
Q
A
L
V
D
Q
L
H
E
L
I
A
N
T
D
L
N
K
L
S
Y
L
N
---
L
-
D
-------------
A
F
Q
K
R
D
I
---------
L
A
A
H
Y
I
A
K
S
A
---
I
R
-
T
K
-
N
L
D
--------
Q
M
T
------
K
A
K
Q
R
L
E
S
I
Y
N
S
I
S
N
PL-----------------------------------------------------
38
Fugue
55.77
11%
-90
- C1 -
3SB1
2
?
A:
[41-160]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ARSGNALP
L
L
R
E
I
A
E
H
L
H
H
L
L
E
T
G
E
A
S
T
I
D
L
S
A
L
P
L
T
P
G
D
L
E
W
L
R
A
E
L
G
GGE
V
-
S
V
T
-
L
H
D
G
-
A
----
S
T
L
D
E
T
A
---------
F
P
G
V
W
W
I
I
H
R
N
AQ
G
A
-
V
T
T
Q
F
I
--------
E
V
A
------
F
V
P
E
L
V
K
S
P
R
A
D
V
A
A
A
R
A
A
L
V
L
R
M
A
D
L-------------------------------------------
13
PsiBlast_PDB
55.08
42%
-51
- C3 -
4N2F
-
PADI2_HUMAN
A:
[542-567]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
S
K
R
I
T
I
N
K
I
L
S
---
N
-
E
S
L
-
V
Q
E
N
-
L
----
Y
F
Q
R
C
L
D
---------
W
N
R
D
I
L
K
K
E
L
---
G
L
-
T
E
Q
D
I
I
--------
D
L
P
------
A
L
F
K
M
D
E
D
H
R
A
R
A
F
--------------------------------------------------------
42
Fugue
54.44
10%
-58
- C4 -
3PV6
-
NCTR3_HUMAN
B:
[1-112]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------L
W
V
S
Q
P
P
E
I
R
T
L
EG
S
S
A
F
L
P
C
S
F
N
A
S
--
Q
G
R
L
A
I
G
S
V
T
W
F
R
D
E
V
V
P
G
K
E
V
R
N
---
G
-
T
P
E
-
F
R
G
R
-
L
A
P
L
A
S
S
R
F
L
H
D
---------
H
Q
A
E
L
H
I
-
R
D
---
V
R
-
G
H
D
A
S
I
--------
Y
V
C
------
R
V
E
V
L
G
L
G
V
G
T
G
N
G
T
R
L
V
V
E
K
E------------------------------------------------
33
Fugue
54.18
16%
-56
- C1 -
5DA0
2
?
A:
[14-484]
QREWFAN
P
R
K
D
V
L
A
G
I
V
V
A
L
A
L
I
P
E
A
I
A
F
S
I
I
A
GVD
P
Q
V
G
L
Y
A
S
F
I
I
A
L
I
T
A
F
LGGRPG
M
I
S
A
A
T
G
A
M
A
L
L
M
T
G
L
V
K
D
HGIQY
L
F
A
A
T
V
L
T
G
V
L
Q
V
V
F
G
W
A
KLARYLKFVP
R
S
V
M
V
G
F
V
N
A
L
A
I
L
I
F
M
A
Q
LPQFVGAN
W
Q
M
Y
A
M
V
A
A
G
L
A
I
I
Y
L
L
P
L
V
F
KAMP
S
A
L
V
A
I
V
V
L
T
V
V
A
V
V
T
GADVKTVGDMGTLPTALPHFQFPQVPLT
F
E
T
L
A
I
I
F
P
V
A
L
T
L
S
L
V
G
L
L
E
S
L
L
T
A
Q
L
I
D
E
R
TDTTSD
K
N
V
E
S
R
G
Q
G
V
A
N
I
V
T
G
F
F
G
G
M
A
G
C
A
M
I
G
Q
S
M
I
N
V
T
S
GGRG
R
L
S
T
F
V
A
G
A
F
L
M
V
L
I
L
A
L
Q
P
L
L
V
Q
IP
M
A
A
L
V
A
V
M
M
V
V
A
I
S
T
F
D
W
G
S
L
-
R
F
P
K
G
--
E
T
V
V
M
L
A
T
V
A
V
T
V
F
T
H
-
D
L
S
L
G
V
L
---
I
-
G
V
V
-
L
S
A
L
-
F
----
F
A
R
K
V
S
Q
---------
L
S
Q
V
T
P
V
D
E
V
---
D
G
-
T
R
T
Y
R
V
--------
R
G
Q
------
L
F
F
V
S
T
H
D
F
L
H
Q
F
D
FTHPAR
R
V
V
I
D
LSD
A
H
F
WD
G
S
A
V
G
A
L
D
K
V
M
L
K
F
M
R
Q
G
T
S
V
E
L
R
GL
N
A
A
S
A
T
LVERL
27
HHSearch
53.66
20%
-87
- C5 -
1OB8
3
HJE_SULSO
A:
[6-59]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
K
N
A
E
R
E
L
V
S
I
L
R
G
----
E
G
---
F
-
N
-
A
-
V
-
R
I
-
P
----
T
------------------
N
P
L
P
D
I
F
---
A
T
-
K
G
-
N
T
L
--------
L
S
I
------
E
C
K
S
T
W
E
N
K
V
K
V
K
E
--------------------------------------------------------
15
PsiBlast_PDB
52.32
42%
-45
- C3 -
4N2D
1
PADI2_HUMAN
A:
[542-567]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
S
K
R
I
T
I
N
K
I
L
S
---
N
-
E
S
L
-
V
Q
E
N
-
L
----
Y
F
Q
R
C
L
D
---------
W
N
R
D
I
L
K
K
E
L
---
G
L
-
T
E
Q
D
I
I
--------
D
L
P
------
A
L
F
K
M
D
E
D
H
R
A
R
A
F
--------------------------------------------------------
26
HHSearch
51.98
21%
-113
- C5 -
2WCW
1
HJC_ARCFU
A:
[7-61]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
G
T
R
F
E
R
D
L
L
V
E
L
W
K
----
A
G
---
F
--
A
A
-
I
R
-
V
-
A
----
G
A
G
V
-------------
S
P
F
P
C
P
D
I
V
---
A
G
-
N
G
-
R
T
Y
--------
L
A
I
------
E
V
K
M
R
K
E
L
P
L
Y
L
S
A
--------------------------------------------------------
9
PsiBlast_PDB
51.80
42%
-48
- C3 -
4N2K
1
PADI2_HUMAN
A:
[542-567]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
S
K
R
I
T
I
N
K
I
L
S
---
N
-
E
S
L
-
V
Q
E
N
-
L
----
Y
F
Q
R
C
L
D
---------
W
N
R
D
I
L
K
K
E
L
---
G
L
-
T
E
Q
D
I
I
--------
D
L
P
------
A
L
F
K
M
D
E
D
H
R
A
R
A
F
--------------------------------------------------------
29
HHSearch
50.77
16%
-97
- C5 -
1GEF
-
HJC_PYRFU
A:
[4-52]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
G
A
Q
A
E
R
E
L
I
K
L
L
E
K
----
H
G
---
F
-
A
-
V
-
V
R
S
A
--------
G
----------------
S
K
K
V
D
L
V
---
A
G
-
N
G
-
K
K
Y
--------
L
C
I
------
E
V
K
V
T
K
K
D
H
L
Y
V
G
K
--------------------------------------------------------
11
PsiBlast_PDB
50.69
42%
-42
- C3 -
4N2H
1
PADI2_HUMAN
A:
[542-567]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
S
K
R
I
T
I
N
K
I
L
S
---
N
-
E
S
L
-
V
Q
E
N
-
L
----
Y
F
Q
R
C
L
D
---------
W
N
R
D
I
L
K
K
E
L
---
G
L
-
T
E
Q
D
I
I
--------
D
L
P
------
A
L
F
K
M
D
E
D
H
R
A
R
A
F
--------------------------------------------------------