@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Wbm0187: (2015-11-29 )
MTSGNVLLTFCSNSGYLRSDMNAVKNLVIWLLIIVITAMFIDSQKDRLRNRFLSTFLPYRGRIQDSRSVEFTKSYDGHFYIQAQVNGHNITFLLDTGATDIVLSQKDALYAGIKLQDIQDFKIYETAKGQIRAGVVQIPQIKIGNFLINDVQASVNTHSMPHSLLGMSFLKYFHFTIRGNKLILYCNSTY
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20........30........40........50........60........70........80......--..90........100.......110.-......120.......130.--.....--.140.-......150......----.160.......170.--......180.......190---------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MTSG
N
V
L
L
T
FCSNSGYL
R
S
D
M
N
A
V
K
N
L
V
I
W
L
L
I
I
V
I
T
A
M
FID
S
Q
K
D
R
L
R
N
R
F
L
S
T
FLPYRGRIQDSR
S
V
E
F
T
KSYD
G
H
F
Y
I
Q
A
Q
VNG--
H
N
I
T
F
L
LDTGA
T
D
I
V
LSQKD
A
L
Y
AG
I
-
K
L
Q
DIQ
D
F
K
I
Y
ETAKG
Q
I
R
A
--
G
V
V
QI--
P
Q
I
K
I-G
N
F
L
I
N
D
V
Q
ASVNTH----SM
P
H
S
L
L
G
M
S
F
L
K
Y
F
--
H
F
T
I
RG
N
K
L
I
L
Y
CNSTY-----------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
93.04
29%
-137
- C5 -
3S8I
3
DDI1_HUMAN
A:
[25-135]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
Y
I
N
C
K
V
N
G
--
H
P
L
K
A
F
V
D
S
G
A
Q
M
T
I
M
S
Q
A
C
A
E
R
C
N
I
M
R
L
V
D
R
R
W
A
G
V
A
K
G
---
Q
R
I
I
--
G
R
V
H
L
--
A
Q
I
Q
I
E
G
D
F
L
--
Q
C
S
F
S
I
L
E
D
----
Q
P
M
D
M
L
L
G
L
D
M
L
R
R
H
--
Q
C
S
I
D
L
K
K
N
V
L
V
I
G
T
T
G
-----------------------------------------------------------------------------------------------------------------------------------------------
37
HHSearch
86.65
25%
-127
- C5 -
3S8I
3
DDI1_HUMAN
A:
[22-135]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
T
M
L
Y
I
N
C
K
V
N
G
--
H
P
L
K
A
F
V
D
S
G
A
Q
M
T
I
M
S
Q
A
C
A
E
R
C
N
I
-
M
R
L
V
D
--
R
R
W
A
G
V
A
K
G
--
Q
R
II
G
R
V
H
L
--
A
Q
I
Q
I
-
E
G
D
F
L
-
Q
C
S
F
S
I
L
E
D
----
Q
P
M
D
M
L
L
G
L
D
M
L
R
R
H
QC
S
I
D
L
K
K
N
V
L
V
I
G
T
T
G
T
Q
-----------------------------------------------------------------------------------------------------------------------------------------------
39
HHSearch
82.23
22%
-140
- C5 -
2I1A
-
DDI1_YEAST
A:
[200-314]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
V
P
M
L
Y
I
N
I
E
I
N
N
--
Y
P
V
K
A
F
V
D
T
G
A
Q
T
T
I
M
S
T
R
L
A
K
K
T
G
L
-
S
R
M
I
--
D
K
R
F
I
------------
I
G
R
I
H
Q
A
Q
V
K
I
-
E
T
Q
Y
I
-
P
C
S
F
T
V
L
D
T
-----
D
I
D
V
L
I
G
L
D
M
L
K
R
H
LA
C
V
D
L
K
E
N
V
L
R
I
A
E
V
E
-------------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
80.19
25%
-109
- C5 -
1JLD
1
POL_HV2RO
A:
[11-97]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
T
A
Y
I
E
G
--
Q
P
V
E
V
L
L
D
T
G
A
-------
D
D
S
I
V
A
G
I
-
E
L
G
N
N
Y
S
P
K
I
V
G
G
I
G
G
F
I
N
T
--
K
E
Y
K
N
--
V
E
I
E
V
-
L
N
---
K
K
V
R
A
T
I
M
T
G
----
D
T
P
I
N
I
F
G
R
N
I
L
T
A
L
--
G
M
S
L
N
L
----------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
79.36
25%
-120
- C5 -
1HSI
-
POL_HV2RO
A:
[11-97]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
T
A
Y
I
E
G
--
Q
P
V
E
V
L
L
D
T
G
A
-------
D
D
S
I
V
A
G
I
-
E
L
G
N
N
Y
S
P
K
I
V
G
G
I
G
G
F
I
N
T
--
K
E
Y
K
N
--
V
E
I
E
V
-
L
N
---
K
K
V
R
A
T
I
M
T
G
----
D
T
P
I
N
I
F
G
R
N
I
L
T
A
L
--
G
M
S
L
N
L
----------------------------------------------------------------------------------------------------------------------------------------------------------
20
PsiBlast_PDB
78.69
25%
-108
- C5 -
3S45
5
?
A:
[11-97]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
T
A
Y
I
E
G
--
Q
P
V
E
V
L
L
D
T
G
A
-------
D
D
S
I
V
A
G
I
-
E
L
G
N
N
Y
S
P
K
I
V
G
G
I
G
G
F
I
N
T
--
K
E
Y
K
N
--
V
E
I
E
V
-
L
N
---
K
K
V
R
A
T
I
M
T
G
----
D
T
P
I
N
I
F
G
R
N
I
L
T
A
L
--
G
M
S
L
N
L
----------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
78.29
25%
-104
- C5 -
1HII
2
POL_HV2RO
A:
[11-97]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
T
A
Y
I
E
G
--
Q
P
V
E
V
L
L
D
T
G
A
-------
D
D
S
I
V
A
G
I
-
E
L
G
N
N
Y
S
P
K
I
V
G
G
I
G
G
F
I
N
T
--
K
E
Y
K
N
--
V
E
I
E
V
-
L
N
---
K
K
V
R
A
T
I
M
T
G
----
D
T
P
I
N
I
F
G
R
N
I
L
T
A
L
--
G
M
S
L
N
L
----------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
78.05
25%
-106
- C5 -
1IDA
2
POL_HV2RO
A:
[11-97]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
T
A
Y
I
E
G
--
Q
P
V
E
V
L
L
D
T
G
A
-------
D
D
S
I
V
A
G
I
-
E
L
G
N
N
Y
S
P
K
I
V
G
G
I
G
G
F
I
N
T
--
K
E
Y
K
N
--
V
E
I
E
V
-
L
N
---
K
K
V
R
A
T
I
M
T
G
----
D
T
P
I
N
I
F
G
R
N
I
L
T
A
L
--
G
M
S
L
N
L
----------------------------------------------------------------------------------------------------------------------------------------------------------
17
PsiBlast_PDB
77.29
25%
-102
- C5 -
3EBZ
5
POL_HV2RO
A:
[11-97]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
T
A
Y
I
E
G
--
Q
P
V
E
V
L
L
D
T
G
A
-------
D
D
S
I
V
A
G
I
-
E
L
G
N
N
Y
S
P
K
I
V
G
G
I
G
G
F
I
N
T
--
K
E
Y
K
N
--
V
E
I
E
V
-
L
N
---
K
K
V
R
A
T
I
M
T
G
----
D
T
P
I
N
I
F
G
R
N
I
L
T
A
L
--
G
M
S
L
N
L
----------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
77.15
25%
-108
- C5 -
1IDB
1
POL_HV2RO
A:
[11-97]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
T
A
Y
I
E
G
--
Q
P
V
E
V
L
L
D
T
G
A
-------
D
D
S
I
V
A
G
I
-
E
L
G
N
N
Y
S
P
K
I
V
G
G
I
G
G
F
I
N
T
--
K
E
Y
K
N
--
V
E
I
E
V
-
L
N
---
K
K
V
R
A
T
I
M
T
G
----
D
T
P
I
N
I
F
G
R
N
I
L
T
A
L
--
G
M
S
L
N
L
----------------------------------------------------------------------------------------------------------------------------------------------------------
18
PsiBlast_PDB
76.87
25%
-101
- C5 -
3EC0
7
POL_HV2RO
A:
[11-97]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
T
A
Y
I
E
G
--
Q
P
V
E
V
L
L
D
T
G
A
-------
D
D
S
I
V
A
G
I
-
E
L
G
N
N
Y
S
P
K
I
V
G
G
I
G
G
F
I
N
T
--
K
E
Y
K
N
--
V
E
I
E
V
-
L
N
---
K
K
V
R
A
T
I
M
T
G
----
D
T
P
I
N
I
F
G
R
N
I
L
T
A
L
--
G
M
S
L
N
L
----------------------------------------------------------------------------------------------------------------------------------------------------------
19
PsiBlast_PDB
76.77
25%
-100
- C5 -
3ECG
9
POL_HV2RO
A:
[11-97]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
T
A
Y
I
E
G
--
Q
P
V
E
V
L
L
D
T
G
A
-------
D
D
S
I
V
A
G
I
-
E
L
G
N
N
Y
S
P
K
I
V
G
G
I
G
G
F
I
N
T
--
K
E
Y
K
N
--
V
E
I
E
V
-
L
N
---
K
K
V
R
A
T
I
M
T
G
----
D
T
P
I
N
I
F
G
R
N
I
L
T
A
L
--
G
M
S
L
N
L
----------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
76.77
25%
-109
- C5 -
1HSH
1
POL_HV2RO
A:
[11-97]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
T
A
Y
I
E
G
--
Q
P
V
E
V
L
L
D
T
G
A
-------
D
D
S
I
V
A
G
I
-
E
L
G
N
N
Y
S
P
K
I
V
G
G
I
G
G
F
I
N
T
--
K
E
Y
K
N
--
V
E
I
E
V
-
L
N
---
K
K
V
R
A
T
I
M
T
G
----
D
T
P
I
N
I
F
G
R
N
I
L
T
A
L
--
G
M
S
L
N
L
----------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
76.08
25%
-101
- C5 -
2MIP
3
POL_HV2RO
A:
[11-97]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
T
A
Y
I
E
G
--
Q
P
V
E
V
L
L
D
T
G
A
-------
D
D
S
I
V
A
G
I
-
E
L
G
N
N
Y
S
P
K
I
V
G
G
I
G
G
F
I
N
T
--
K
E
Y
K
N
--
V
E
I
E
V
-
L
N
---
K
K
V
R
A
T
I
M
T
G
----
D
T
P
I
N
I
F
G
R
N
I
L
T
A
L
--
G
M
S
L
N
L
----------------------------------------------------------------------------------------------------------------------------------------------------------
60
Fugue
75.77
20%
-122
- C5 -
2I1A
-
DDI1_YEAST
A:
[200-324]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
V
P
M
L
Y
I
N
I
E
I
N
N
--
Y
P
V
K
A
F
V
D
T
G
A
Q
T
T
I
M
S
T
R
L
A
K
K
T
G
-----------
L
S
R
M
I
D
K
R
F
I
I
--
G
R
I
H
Q
--
A
Q
V
K
I
-
E
T
Q
Y
I
P
C
S
F
T
V
L
D
T
D
------
I
D
V
L
I
G
L
D
M
L
K
R
H
--
L
A
C
V
D
L
K
E
N
V
L
R
I
A
E
V
E
T
S
F
L
SEAEIP-------------------------------------------------------------------------------------------------------------------------------------
40
HHSearch
71.58
21%
-124
- C5 -
3SLZ
3
?
A:
[19-124]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
P
P
E
P
R
I
T
L
K
V
G
G
--
Q
P
V
T
F
L
V
D
T
G
A
Q
H
S
V
L
T
Q
N
P
G
P
L
S
----
D
----
K
S
A
W
V
Q
G
A
T
G
G
K
R
Y
--
R
W
T
T
D
--
R
K
V
H
L
-
A
T
G
K
V
T
H
-
S
F
L
H
V
P
D
-----
C
P
Y
P
L
L
G
R
D
L
L
T
K
L
K
A
Q
I
H
F
E
G
S
G
A
Q
V
V
G
P
M
G
Q
-----------------------------------------------------------------------------------------------------------------------------------------------
43
HHSearch
69.03
20%
-87
- C5 -
3EC0
7
POL_HV2RO
A:
[6-93]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
K
R
P
V
V
T
A
Y
I
E
G
--
Q
P
V
E
V
L
L
D
T
G
A
D
D
S
I
V
A
G
I
E
L
G
N
N
Y
--------
S
P
K
I
V
G
G
I
G
G
F
I
N
T
--
K
E
Y
K
N
--
V
E
I
E
V
-
L
N
K
K
V
R
A
-
T
I
M
T
G
D
------
T
P
I
N
I
F
G
R
N
I
L
T
A
L
--
G
M
S
L
N
L
----------------------------------------------------------------------------------------------------------------------------------------------------------
38
HHSearch
64.95
19%
-91
* C5 *
1FMB
1
POL_EIAVC
A:
[5-98]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
K
R
P
T
T
I
V
L
I
N
D
--
T
P
L
N
V
L
L
D
T
G
A
D
T
S
V
L
T
T
A
H
Y
N
R
L
K
Y
-
R
-
G
R
K
Y
Q
G
T
G
I
G
G
V
G
G
N
V
E
T
--
F
S
-
T
P
--
V
T
I
K
K
-
K
G
R
H
I
-
K
T
R
M
L
V
A
D
------
I
P
V
T
I
L
G
R
D
I
L
Q
D
L
--
G
A
K
L
V
L
----------------------------------------------------------------------------------------------------------------------------------------------------------
66
Fugue
64.19
20%
-49
- C4 -
3W5F
10
?
A:
[3-708]
EAE
F
S
V
S
Y
D
DRA
I
I
I
NGKRKI
L
I
S
G
S
I
H
YPRSTPQM
W
P
D
L
I
Q
K
A
K
D
G
GLD
V
I
E
T
Y
V
F
W
N
G
H
E
PSPGKYNFEGRYD
L
V
R
F
I
K
M
V
Q
R
A
GLYVNLRIGPYVCAEWNFGGFP
V
W
L
K
Y
VPGMEFRTNN
Q
P
F
K
V
A
M
Q
G
F
V
Q
K
I
V
N
M
M
K
S
E
NLFESQGGPII
M
A
Q
I
E
NEY
G
P
V
E
W
E
I
G
A
P
G
K
A
Y
T
K
W
A
A
Q
M
A
V
G
LKTG
V
P
W
I
M
C
KQEDAPDP
V
I
D
T
C
N
G
FYCEGFRPNKPY
K
P
K
M
W
TEVWT
G
W
Y
T
K
FGG
P
I
P
Q
R
P
A
E
D
I
A
F
S
V
A
R
F
V
Q
N
NGS
F
F
N
Y
YMYHGGTNFGRTSSGLFIATSYDYDAPLDEYGLLNE
P
K
Y
G
H
L
R
D
L
H
K
A
I
K
L
S
E
P
A
L
V
S
S
Y
A
A
V
T
S
LGSN
Q
E
A
H
V
Y
R
S
KS
G
A
C
A
A
F
L
S
N
YDSR
Y
S
V
K
V
T
F
QN
R
P
Y
N
L
P
P
W
S
I
S
I
L
PDCKTAVYNTAQVN
S
Q
S
S
S
I
K
M
T
P
A
G
G
G
L
S
W
---
Q
S
Y
N
E
E
T
P
T
A
L
T
A
N
G
L
W
------------
E
Q
K
N
V
T
R
D
S
--
S
D
Y
L
W
Y
M
T
N
V
N
I
A
S
N
E
G
F
L
K
N
-
G
K
D
P
Y
L
T
V
M
S
A
G
--
H
V
L
H
V
F
V
N
G
K
L
S
G
T
V
Y
G
T
L
D
-------------
N
P
K
L
T
Y
S
G
N
V
K
L
R
A
--
G
I
N
K
I
--
S
L
L
S
V
-
S
V
G
L
P
N
---
V
G
V
H
Y
D
----
T
W
N
A
G
V
L
G
P
V
T
L
S
G
L
--
N
---
E
G
S
R
N
L
A
K
Q
K
W
S
Y
K
V
G
L
K
G
E
S
L
SLHS
L
S
G
S
S
S
V
E
W
V
R
G
SLMAQKQPL
T
W
Y
K
A
T
F
N
APGGN
D
P
L
A
L
DMASM
G
K
G
Q
I
W
I
NGEGVGRHWPGY
I
A
Q
G
D
C
S
KCSYAGTFNEKKCQTNCGQPSQR
W
Y
H
V
P
RSWLKPSG
N
L
L
V
V
F
E
EWGGNPTG
I
S
L
V
R
R
S
R
S
49
HHSearch
63.10
16%
-78
- C5 -
1WKR
4
CARP_IRPLA
A:
[3-110]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
V
P
A
T
-
N
Q
L
V
D
Y
V
V
N
V
G
V
G
S
P
A
T
T
Y
S
L
L
V
D
T
G
S
S
N
T
W
L
G
A
D
K
S
Y
V
K
T
S
-
T
S
S
A
T
S
D
K
V
S
V
T
Y
G
S
G
S
F
S
G
---
T
E
Y
T
--
D
T
V
T
L
-
G
S
L
T
I
P
K
Q
S
I
G
V
A
S
R
DSGF
D
G
V
D
G
I
L
G
V
G
P
V
D
L
T
--
V
G
T
L
S
P
H
T
S
T
S
I
P
T
V
T
D
-----------------------------------------------------------------------------------------------------------------------------------------------