@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Wbm0744: (2015-12-04 )
MLPATPDNSTAVAIIPIAAILGIIPIATSVAPIAPNNNAKPIVHPPEKVLEGCCFCEEIMLVYYKTVARCFVFCANYYYFHHLQTFFEMELYYL
Atome Classification :
(18 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.....-....10....---....20.-....--...---30......-.--.40----.........50..--...----...60.----.......70..--------...---..---------------.80........90--....----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MLPAT-PDN
S
T
A
V
A
I
I
---
P
I
A
A
I
L
G
-
I
IPI--ATS---VAPIAPNN-N--AK-----PIVH
P
P
E
K
V
L
E
G
C
--
C
F
C
----
E
E
I
M
L
V
----
Y
Y
K
T
V
A
R
C
F
V
F
--------
C
A
N
---
Y
Y
---------------
Y
F
H
H
L
Q
T
F
F
E
M
E
---
L
YYL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
86.80
36%
-77
- C4 -
4J3N
3
TOP2B_HUMAN
A:
[440-480]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
P
I
I
---
P
M
V
L
I
N
G
-
A
E
G
I
--
G
T
G
---
W
A
C
K
L
P
N
Y
-
D
--
A
R
-----
E
I
V
N
N
V
R
R
M
L
D
G
L
--
D
P
H
----
P
M
L
P
N
Y
----
K
N
F
K
G
T
I
Q
E
L
G
--------
Q
N
Q
---
Y
A
---------------
V
S
G
E
I
F
V
V
D
R
N
T
---
V
E
I
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
86.45
36%
-75
- C4 -
3QX3
3
TOP2B_HUMAN
A:
[440-480]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
P
I
I
---
P
M
V
L
I
N
G
-
A
E
G
I
--
G
T
G
---
W
A
C
K
L
P
N
Y
-
D
--
A
R
-----
E
I
V
N
N
V
R
R
M
L
D
G
L
--
D
P
H
----
P
M
L
P
N
Y
----
K
N
F
K
G
T
I
Q
E
L
G
--------
Q
N
Q
---
Y
A
---------------
V
S
G
E
I
F
V
V
D
R
N
T
---
V
E
I
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
85.88
36%
-69
- C4 -
4G0V
3
TOP2B_HUMAN
A:
[440-480]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
P
I
I
---
P
M
V
L
I
N
G
-
A
E
G
I
--
G
T
G
---
W
A
C
K
L
P
N
Y
-
D
--
A
R
-----
E
I
V
N
N
V
R
R
M
L
D
G
L
--
D
P
H
----
P
M
L
P
N
Y
----
K
N
F
K
G
T
I
Q
E
L
G
--------
Q
N
Q
---
Y
A
---------------
V
S
G
E
I
F
V
V
D
R
N
T
---
V
E
I
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
85.36
36%
-63
- C4 -
4G0U
3
TOP2B_HUMAN
A:
[440-480]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
P
I
I
---
P
M
V
L
I
N
G
-
A
E
G
I
--
G
T
G
---
W
A
C
K
L
P
N
Y
-
D
--
A
R
-----
E
I
V
N
N
V
R
R
M
L
D
G
L
--
D
P
H
----
P
M
L
P
N
Y
----
K
N
F
K
G
T
I
Q
E
L
G
--------
Q
N
Q
---
Y
A
---------------
V
S
G
E
I
F
V
V
D
R
N
T
---
V
E
I
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
85.16
36%
-73
- C4 -
4G0W
3
TOP2B_HUMAN
A:
[440-480]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
P
I
I
---
P
M
V
L
I
N
G
-
A
E
G
I
--
G
T
G
---
W
A
C
K
L
P
N
Y
-
D
--
A
R
-----
E
I
V
N
N
V
R
R
M
L
D
G
L
--
D
P
H
----
P
M
L
P
N
Y
----
K
N
F
K
G
T
I
Q
E
L
G
--------
Q
N
Q
---
Y
A
---------------
V
S
G
E
I
F
V
V
D
R
N
T
---
V
E
I
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
83.87
36%
-62
- C6 -
3PFN
5
NADK_HUMAN
A:
[251-300]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
V
S
T
-
P
T
G
S
T
A
Y
A
A
A
---
A
G
A
S
M
I
H
---
P
N
V
P
A
I
M
---
I
T
P
I
C
P
H
S
L
S
--
F
R
-----
P
I
V
V
P
A
G
V
E
L
K
I
M
--
L
S
P
----
E
A
R
N
T
A
----
W
V
S
F
D
G
R
K
R
Q
E
--------
I
R
H
---
G
D
---------------
S
I
S
I
T
T
S
C
Y
P
L
P
---
S
I
C
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
77.82
13%
-158
- C5 -
1D2Z
-
KPEL_DROME
A:
[7-108]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
D
N
T
M
A
I
R
L
L
---
P
L
P
V
R
A
Q
-
L
C
A
H
--
L
D
A
L
DV
W
Q
Q
L
A
T
A
V
-
K
LY
P
D
-----
Q
V
E
Q
I
S
S
Q
K
Q
R
G
R
--
S
A
S
----
N
E
F
L
N
I
W
GGQ
Y
N
H
T
V
Q
T
L
F
A
L
--------
F
K
K
L
KL
H
N
---------------
A
M
R
L
I
K
D
Y
V
S
E
D
---
L
H
K
Y
I---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
77.49
30%
-44
- C6 -
1U0T
-
NADK_MYCTU
A:
[194-240]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
T
-
P
T
G
S
T
A
Y
A
F
S
---
A
G
G
P
V
L
W
-
P
D
L
E
--
A
I
L
---
V
V
P
N
N
A
H
A
L
F
--
G
R
-----
P
M
V
T
S
P
E
A
T
I
A
I
E
--
I
E
A
----
D
G
H
D
A
L
----
V
F
C
D
G
R
R
E
M
L
I
--------
P
A
G
---
S
R
---------------
L
E
V
T
R
C
V
T
S
V
K
W
---
A
R
L
D
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
75.60
29%
-63
* C6 *
3AFO
2
POS5_YEAST
A:
[234-283]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
A
T
-
P
T
G
S
T
A
Y
S
L
S
---
A
G
G
S
I
V
S
P
L
V
P
---
A
I
L
---
M
T
P
I
C
P
R
S
L
S
--
F
R
-----
P
L
I
L
P
H
S
S
H
I
R
I
K
--
I
G
S
----
K
L
N
Q
K
P
----
V
N
S
V
V
K
L
S
V
D
G
--------
I
P
Q
---
Q
D
---------------
L
D
V
G
D
E
I
Y
V
I
N
E
---
V
G
T
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
65.83
15%
-128
- C5 -
4MI7
1
?
A:
[6-139]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GID
I
I
E
C
E
N
L
L
K
E
M
N
V
Q
K
I
-
P
E
S
S
L
F
T
N
I
K
---
E
A
L
Q
A
E
V
-
F
N
S
T
--
V
E
D
---
D
F
E
S
F
I
S
Y
-
E
--
L
Q
NH
G
P
L
M
L
I
R
P
S
S
E
-------
C
L
H
----
A
E
C
I
V
G
----
Y
D
S
E
V
K
K
V
L
I
Y
DSNT
S
P
E
W
Q
S
N
---
I
D
---------------
V
Y
D
K
L
T
L
A
F
N
C
S
I
C
G
L
Y
Y
D
GVYEP-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
65.82
21%
-77
- C5 -
4BS9
1
?
A:
[3-781]
PTALQIKPHFHVEIIEP
K
Q
V
Y
L
L
G
EQ
G
N
H
A
L
T
G
Q
L
Y
C
Q
I
LPFLNGEYT
R
E
Q
I
V
E
K
L
DGQVP
E
E
Y
I
D
F
V
L
S
R
L
V
E
K
GYLTEVAPELS
L
E
V
A
A
F
W
S
E
L
GIAPSV
V
A
E
G
L
K
Q
P
V
T
V
T
T
A
G
KGIR
E
G
I
V
A
N
L
A
A
A
L
E
E
A
G
I
Q
V
S
D
PTAQ
L
Q
V
V
L
T
DDYLQ
P
E
L
A
A
I
N
K
E
A
L
E
R
Q
Q
P
W
L
L
V
KPVGS
I
L
W
L
G
PLFVPGETGC
W
H
C
L
A
Q
R
L
Q
G
N
R
E
V
E
A
S
V
L
Q
Q
K
R
A
L
QERP
T
A
R
A
T
L
P
S
T
L
Q
T
G
L
Q
W
A
A
T
E
I
A
K
W
M
V
K
R
H
L
N
A
I
APGTARFPTLAG
K
I
F
T
F
N
QTTL
E
L
K
A
H
P
L
S
R
R
PQCPTCGDRE
T
L
Q
R
R
G
F
E
P
L
K
L
E
S
R
P
KHPE
Q
T
V
Q
K
Y
QHLIGPITGVVTELVRSR
A
S
G
L
C
E
A
I
E
R
Y
S
G
IFQGD
E
P
R
K
R
A
T
LAELGDLAIH
P
E
Q
C
L
HFS
D
R
Q
Y
D
N
R
E
S
S
N
E
R
ATVTHD
W
I
P
Q
R
-
F
D
A
S
K
A
H
D
W
T
---
P
V
W
S
L
T
E
-
Q
T
H
K
--
Y
L
P
---
T
A
L
C
Y
Y
R
Y
-
P
--
F
P
-----
P
E
H
R
F
C
R
S
D
S
N
G
N
--
A
A
G
NT
L
E
E
A
I
L
Q
G
----
F
M
E
L
V
E
R
D
S
V
C
--------
L
W
W
---
Y
N
R
V
S
R
P
A
V
DLSSFDE
P
Y
F
L
Q
L
Q
Q
F
Y
Q
T
Q
---
N
R
D
L
W
V
L
D
LTADLGI
P
A
F
V
G
V
S
N
R
KAGSSER
I
I
L
G
F
G
A
H
LD
P
T
V
A
I
L
R
A
L
T
E
V
N
Q
I
G
L
E
LDATDWLVNATLAASPYLVADAS
Q
P
L
K
T
AKDYPRRWSDD
I
Y
T
D
V
M
T
C
V
E
I
A
K
Q
A
G
L
E
T
L
V
L
D
QTRPDIGL
N
V
V
K
V
I
V
P
G
M
R
F
W
SRFGSGR
L
Y
D
V
P
V
K
L
GWRE
Q
P
L
A
EAQMNPTPMPF
10
HHSearch
60.27
31%
-25
- C6 -
1Z0S
2
NADK_ARCFU
A:
[178-226]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
A
T
-
Q
I
G
S
T
G
Y
A
F
S
A
G
G
P
V
V
E
P
Y
----
L
E
--
C
F
I
---
L
I
P
I
A
P
F
R
F
G
--
W
K
-----
P
Y
V
V
S
M
E
R
K
I
E
V
I
--
A
E
K
----
A
I
V
V
A
D
----
G
Q
K
S
V
D
F
D
G
E
I
--------
T
I
E
---
K
S
---------------
E
F
P
A
V
F
F
K
N
E
K
R
---
F
R
N
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
59.99
16%
-174
- C3 -
1M94
-
HUB1_YEAST
A:
[1-73]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
E
V
V
V
N
D
R
L
G
K
K
V
R
V
---
K
C
L
A
E
D
S
-
V
G
D
F
--
K
K
V
---
L
S
L
Q
I
G
T
Q
-
P
-------------------------------
N
K
I
V
L
Q
----
K
G
G
S
V
L
K
D
H
I
S
--------
L
E
D
---
Y
-------------------
E
V
H
D
Q
T
N
L
E
---
L
Y
Y
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
53.38
19%
-67
* C5 *
2LQX
-
ITR2C_FAGES
A:
[1-41]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
E
K
P
Q
Q
E
L
E
E
C
--
Q
N
V
----
C
R
M
K
R
W
----
S
T
E
M
V
H
R
C
E
K
K
--------
C
E
E
---
K
F
---------------
E
R
Q
Q
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
50.81
29%
-40
- C2 -
2EBU
-
RFC1_HUMAN
A:
[392-415]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
A
L
-
G
--
S
K
-----
E
I
P
K
G
A
E
N
C
L
E
G
L
--
I
F
V
----
I
T
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
47.24
56%
-34
- C4 -
2LRD
-
?
A:
[30-49]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
C
V
L
A
A
L
K
A
A
E
G
C
A
S
C
F
C
----
E
D
H
C
H
G
----
V
C
K
D
L
H
L
C
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
33.53
20%
16
* C4 *
2DDI
-
A:
[49-68]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
F
H
S
R
E
S
C
E
D
A
--------
C
P
V
---
V
D
---------------
H
H
H
H
H
H
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
4.88
13%
324
- C1 -
3JZ3
-
QSEC_ECOLI
A:
[207-217]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
F
E
A
K
V
--------
S
W
L
---
E
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------