@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : SA0750_1: (2016-03-18 )
MSLHFAILFWLALIFLVAATFILVLMKKTGKESKKESYLSFTVILYIFGFAILIYTFIFGVL
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10.-..-..-.---..20...-----...-.--------.30-.......-------------.40-...-.....50........--------60.-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MS
L
H
F
A
I
L
F
W
L
A
-
L
I
-
F
L
-
V
---
A
A
T
F
I
L
V
-----
L
M
K
-K--------TGK-
E
S
K
K
E
S
Y
-------------
L
S
F
-
T
V
I
-
L
Y
I
F
G
F
A
I
L
I
Y
T
F
I
F
--------GVL-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
70.88
17%
-231
- C2 -
1RWU
-
YBED_ECOLI
A:
[1-87]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MKTKLN
E
L
L
E
F
P
T
P
F
T
Y
K
-
V
M
-
G
Q
-
A
LPE
L
V
D
Q
V
V
E
-----
V
V
Q
-
R
H
A
P
G
D
Y
T
P
T
V
K
-
P
S
S
K
G
N
Y
-------------
H
S
V
-
S
I
T
-
I
N
A
T
H
I
E
Q
V
E
T
L
Y
E
E
L
G
KID
I
V
R
M
V
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
67.31
24%
-197
- C3 -
4RBN
-
?
A:
[4-792]
IDTLATCTQQN
R
D
A
V
Y
T
L
L
R
R
Y
F
TANRTLLL
Q
S
D
L
R
E
G
L
L
QTEQDCGQS
D
M
L
R
A
F
V
F
R
LQ
E
G
I
F
S
SP
W
A
Y
L
A
L
R
PEIA
K
W
E
F
M
R
I
H
QEH
L
I
P
E
K
L
T
I
S
E
F
L
K
F
K
E
T
V
V
KGEAT
E
S
V
L
E
VDFGPFNRGFPRLKESRSIGQ
G
V
I
F
L
N
R
K
L
S
S
E
MFSRIEAGHT
S
L
L
H
F
L
G
V
HAIEGQQLMFSNNSHD
I
H
A
V
R
N
Q
L
R
Q
A
L
E
M
L
E
T
LDGTTPWIEL
A
P
K
M
N
Q
L
GFAPGWGHN
A
N
R
V
A
E
T
M
N
M
L
M
D
I
L
E
APS
P
S
A
L
E
E
F
L
A
C
IPMIS
R
L
L
I
L
S
P
H
G
Y
F
G
Q
D
NVLGLPDTGG
Q
V
V
Y
I
L
D
Q
V
R
A
L
E
K
E
M
H
D
R
L
Q
L
Q
GVQ
V
E
P
K
I
L
I
V
T
R
L
I
PDAGDTTCNQR
L
E
K
V
S
GCTN
T
W
I
L
R
V
P
F
R
K
HNGEIIP
H
W
I
S
RFEIWPH
L
E
I
F
A
G
D
V
E
R
E
A
L
A
E
L
GGHPD
L
I
I
G
N
Y
S
D
G
N
L
V
A
T
L
L
S
R
R
L
G
V
T
Q
C
N
I
AHALEKTKYLHSDIYWQENE
D
K
Y
H
F
S
C
Q
Y
T
A
D
-
L
L
-
A
M
-
N
---
S
A
D
F
I
V
T
STYQE
I
A
G
-
T
--------
R
E
A
-
E
G
Q
Y
E
S
Y
-------------
Q
A
F
-
S
M
P
D
L
Y
R
V
I
H
G
I
D
L
F
D
P
K
F
--------
N
I
V
S
P
G
A
NADIYFPYSDPNRRLHSL
I
P
E
I
E
S
L
I
FDDATNLPARGYLQDPD
K
P
L
I
F
T
M
A
RLDRIKN
I
T
G
L
V
E
L
Y
A
A
S
P
R
L
R
S
L
A
N
L
V
I
V
GGKIDPQHSSDHEE
Q
E
Q
I
H
R
M
H
Q
L
M
D
E
H
ELDQQ
V
R
W
L
GMRLD
K
N
L
A
G
E
L
Y
R
Y
I
ADKR
G
I
F
V
Q
PALFEAFG
L
T
I
I
E
A
M
A
S
GLP
T
F
A
T
RYG
G
P
L
E
I
I
QNNRS
G
F
H
I
D
PNQGA
A
T
A
D
L
I
A
D
F
F
E
KNLENPQ
E
W
E
R
I
S
Q
G
A
L
D
R
V
A
S
RYT
W
K
L
Y
A
E
R
M
M
T
L
S
R
I
Y
G
F
W
K
F
V
SGLER
E
E
T
D
R
Y
L
N
M
F
Y
H
L
Q
F
R
P
L
A
N
R
L
A
H--
5
HHSearch
66.37
21%
-177
- C3 -
3QAP
12
BACS2_NATPH
A:
[7-54]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
F
W
L
G
-
A
I
-
G
M
-
L
---
V
G
T
L
A
F
A
-----
W
A
G
-
R
--------
D
A
G
-
S
G
E
R
R
Y
Y
-------------
V
T
L
-
V
G
I
-
S
G
I
A
A
V
A
Y
V
V
M
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
64.10
20%
-198
- C3 -
3S28
7
SUSY1_ARATH
A:
[27-807]
----------N
E
V
L
A
L
L
S
R
V
E
A
K
G
K
G
I
L
Q
Q
N
Q
I
I
A
E
F
EALPEQTRKKLEGGP
F
F
D
L
L
K
S
TQ
E
A
I
V
L
P
P
W
V
A
L
A
V
R
PRPG
V
W
E
Y
L
R
V
N
LHAL
V
V
E
E
L
Q
P
A
E
F
L
H
F
K
E
E
L
V
DGVKNGNF
T
L
E
L
D
FEPFNAS
I
P
R
P
TLHKYIGN
G
V
D
F
L
N
R
H
L
S
A
K
L
FHDKESL
L
P
L
L
K
F
L
R
L
HSHQGKNLMLSEKIQN
L
N
T
L
Q
H
T
L
R
K
A
E
E
Y
L
A
E
LKSETLYEEF
E
A
K
F
E
E
I
G
L
E
R
GWGDN
A
E
R
V
L
D
M
I
R
L
L
L
D
L
L
E
APD
P
C
T
L
E
T
F
L
G
R
VPMVF
N
V
V
I
L
S
PHGYFAQDNVLGYPDTG
G
Q
V
V
Y
I
L
D
Q
V
R
A
L
E
I
E
M
L
Q
R
I
K
Q
Q
GLN
I
K
P
R
I
L
I
L
T
R
L
L
PDAVGTTCGER
L
E
R
V
YDSEY
C
D
I
L
R
V
P
F
R
T
EKGIVR
K
W
I
S
RFEVWPY
L
E
T
Y
T
E
D
A
A
V
E
L
S
K
E
LNGKPD
L
I
I
G
N
Y
S
D
G
N
L
V
A
S
L
L
A
H
K
L
G
V
T
Q
C
T
I
AHAL
E
K
T
K
Y
PDSDIYWKKLD
D
K
Y
H
F
S
C
Q
F
T
A
D
-
I
F
-
A
M
-
N
---
H
T
D
F
I
I
T
STFQE
I
A
G
-
S
--------
K
E
T
-
V
G
Q
Y
E
S
H
-------------
T
A
F
-
T
L
P
G
L
Y
R
V
V
H
G
I
D
V
F
D
P
K
F
--------
N
I
V
S
P
G
A
DMSIYFPYTEEKRRLTKF
H
S
E
I
E
E
L
L
YSDVENKEHLCVLKDKKKPILFTMARLDRVKN
L
S
G
L
V
E
W
Y
G
K
N
T
R
L
R
E
L
A
N
L
V
V
V
G
G
DRRKESKD
N
E
E
K
A
E
M
K
K
M
Y
D
L
I
E
E
Y
KLNGQ
F
R
W
I
S
SQMD
R
V
R
N
G
E
L
Y
R
Y
I
C
D
T
K
G
A
F
V
Q
PALYEAFG
L
T
V
V
E
A
M
T
C
GL
P
T
F
A
T
CKGG
P
A
E
I
I
VHGKS
G
F
H
I
D
PYH
G
D
Q
A
A
D
T
L
A
D
F
F
T
K
C
K
E
D
P
S
H
W
D
E
I
S
K
G
G
L
Q
R
I
E
E
KYTWQI
Y
S
Q
R
L
L
T
L
T
G
V
Y
G
F
W
K
H
V
S
NLDR
L
E
A
R
R
Y
L
E
M
F
Y
A
L
K
Y
R
P
L
A
Q
A
V
P
L
A
Q
D
12
HHSearch
61.74
19%
-221
- C3 -
1XIO
3
?
A:
[7-63]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
H
W
I
Y
-
V
A
G
M
T
-
I
---
G
A
L
H
F
W
S
-----
L
S
R
-
N
--------
P
R
G
--
V
P
Q
Y
E
Y
-------------
L
V
A
-
M
F
I
-
P
I
W
S
G
L
A
Y
M
A
M
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
57.93
16%
-204
- C3 -
3DDL
3
?
A:
[19-74]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
F
S
F
T
-
V
A
-
T
M
-
T
---
A
S
F
V
F
F
V
-----
L
A
R
-
N
--------
N
V
A
-
P
K
Y
R
I
S
M
-------------
M
V
S
-
A
L
V
-
V
F
I
A
G
Y
H
Y
F
R
I
T
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
56.76
18%
-198
- C3 -
3AM6
2
?
A:
[11-61]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
A
Q
W
I
V
-
F
A
-
I
M
-
A
---
A
A
A
I
A
F
G
-----
V
A
V
-
H
--------
F
R
P
---
L
K
S
A
Y
-------------
Y
I
N
-
I
A
I
-
C
T
I
A
A
T
A
Y
Y
A
M
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
55.88
15%
-258
- C3 -
3X29
-
CLD19_MOUSE
A:
[83-141]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
M
V
V
A
-
V
L
-
L
G
-
F
---
V
A
M
V
L
S
V
-----
V
G
M
K------------N
P
T
A
K
S
R
V
-------------
A
I
S
G
G
A
L
-
F
L
L
A
G
L
C
T
L
T
A
V
S
W
Y
--------
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
54.90
16%
-170
- C3 -
3WQJ
4
BACR2_HALS2
A:
[27-71]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
-
L
L
-
M
L
-
I
---
G
T
F
Y
F
I
A
-----
R
G
W
-
G
--------
V
T
D
-
K
E
A
R
E
Y
Y
-------------
A
I
T
-
I
L
V
-
P
G
I
A
S
A
A
Y
L
A
M
F
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
46.98
8%
-190
- C3 -
2JAF
2
BACH_HALS3
A:
[32-82]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
L
W
V
N
-
V
A
-
L
A
G
I
---
A
I
L
V
F
V
Y
-----
M
G
R
-
T
--------
I
R
P
-
G
R
P
R
L
I
W
-------------
G
A
T
-
L
M
I
-
P
L
V
S
I
S
S
Y
L
G
L
L
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
44.62
27%
-123
- C3 -
2AXT
117
PSBM_THEEB
M:
[1-36]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
E
V
N
Q
L
G
L
I
A
T
A
-
L
F
-
V
L
-
V
---
P
S
V
F
L
I
I
-----
L
Y
V
-
Q
--------
T
E
S
-
Q
Q
K
S
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
42.94
22%
-168
- C3 -
1VF5
1
PETN_MASLA
H:
[3-29]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
D
V
L
G
W
V
A
-
L
L
-
V
V
-
F
---
T
W
S
I
A
M
V
-----
V
W
G
-
R
--------
N
G
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
Fugue
42.85
21%
-76
- C3 -
1VF5
1
PETM_MASLA
F:
[1-33]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
E
-
E
M
L
Y
A
A
L
-------------
L
S
F
-
G
L
I
-
F
V
G
W
G
L
G
V
L
L
L
K
I
Q
G
--------
A
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
40.27
32%
-66
- C3 -
3WU2
-
PSBM_THEVL
M:
[18-33]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
-
V
---
P
S
V
F
L
I
I
-----
L
Y
V
-
Q
--------
T
E
S
-
Q
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
39.11
4%
-183
- C3 -
3QBG
1
BACH_NATPH
A:
[36-86]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
S
L
Y
I
N
I
A
L
-
A
G
-
L
---
S
I
L
L
F
V
F
-----
M
T
R
-
G
--------
L
D
D
-
P
R
A
K
L
I
A
-------------
V
S
T
-
I
L
V
-
P
V
V
S
I
A
S
Y
T
G
L
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
38.43
47%
3
- C3 -
3W5A
-
SARCO_RABIT
C:
[4-18]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
T
R
E
L
C
-------------
L
N
F
-
T
V
V
-
L
I
T
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
37.02
38%
80
- C1 -
1MVJ
1
A:
[1-26]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
K
-
L
--------
K
G
Q
-
S
C
R
K
T
S
Y
DCCSGSCGRSGKC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
33.92
16%
-50
- C3 -
2WWB
-
SC61G_CANFA
B:
[27-57]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
--------
P
D
R
-
K
E
F
Q
K
I
A
-------------
M
A
T
-
A
I
G
-
F
A
I
M
G
F
I
G
F
F
V
K
L
I
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
33.74
17%
-20
* C3 *
1Y03
-
ANP3_MYOSC
A:
[1-35]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
M
N
A
P
A
-
R
A
-
A
A
-
K
---
T
A
A
D
A
L
A
-----
A
A
K
-
K
--------
T
A
A
-
D
A
A
A
A
A
A
-------------
A
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
33.61
39%
-159
- C3 -
3DL8
-
SECG_AQUAE
E:
[55-72]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
Y
W
L
G
-
A
L
-
F
L
-
V
---
L
A
L
L
L
S
V
-----
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------