@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : SA1758: (2016-03-28 )
MLKRSLLFLTVLLLLFSFSSITNEVSASSSFDKGKYKKGDDASYFEPTGPYLMVNVTGVDSKGNELLSPHYVEFPIKPGTTLTKEKIEYYVEWALDATAYKEFRVVELDPSAKIEVTYYDKNKKKEETKSFPITEKGFVVPDLSEHIKNPGFNLITKVVIEKK
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------.........10..--....-...20........30--.....-....40........50------------------------........60-.......----------.70....-...---.----80....----....90.------....--.--..---100-----.---.......---------------110......-..120...--------.....130.....----..140.......-150...-....160.-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------ML
K
R
S
L
L
F
L
T
-
V
L
--
L
L
L
F
-
S
F
S
S
I
T
N
EVSASSS---FDKGK-YKKGDDASYFEPTG
P
Y
------------------------
L
M
V
N
V
T
GVDS-KGNELLS----------P
H
Y
V
E
FP-IKP---G----TTL
T
K
E
----
K
I
E
Y
Y
V
E------WALD--A--T
A
---
Y
K
------
E
---
F
R
V
V
ELD---------------PS-
A
K
I
E
V
T
-YYD-KNKK--------KEETKSFPITEKG----FVVP
D
L
S
E
H
IKN-P
G
F
N
L
I
-
T
K
V
VIEKK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
HHSearch
95.51
100%
-131
- C6 -
2SAK
1
SAK_STAAU
A:
[1-121]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
Y
F
E
P
T
G
P
Y
------------------------
L
M
V
N
V
T
G
V
D
S
-
K
G
N
E
L
L
S
----------
P
H
Y
V
E
F
P
-
I
K
P
---
G
----
T
T
L
T
K
E
----
K
I
E
Y
Y
V
E
------
W
A
L
D
--
A
--
T
A
---
Y
K
------
E
---
F
R
V
V
E
L
D
---------------
P
S
-
A
K
I
E
V
T
-
Y
Y
D
-
K
N
K
K
--------
K
E
E
T
K
S
F
P
I
T
E
K
G
----
F
V
V
P
D
L
S
E
H
I
K
N
-
P
G
F
N
L
I
-
T
K
V
V
I
E
K
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
95.51
100%
-131
- C6 -
2SAK
1
SAK_STAAU
A:
[1-121]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
Y
F
E
P
T
G
P
Y
------------------------
L
M
V
N
V
T
G
V
D
S
-
K
G
N
E
L
L
S
----------
P
H
Y
V
E
F
P
-
I
K
P
---
G
----
T
T
L
T
K
E
----
K
I
E
Y
Y
V
E
------
W
A
L
D
--
A
--
T
A
---
Y
K
------
E
---
F
R
V
V
E
L
D
---------------
P
S
-
A
K
I
E
V
T
-
Y
Y
D
-
K
N
K
K
--------
K
E
E
T
K
S
F
P
I
T
E
K
G
----
F
V
V
P
D
L
S
E
H
I
K
N
-
P
G
F
N
L
I
-
T
K
V
V
I
E
K
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
94.49
99%
-113
- C6 -
1C79
-
SAK_STAAU
A:
[7-136]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
K
-
Y
K
K
G
D
D
A
S
Y
F
E
P
T
G
P
Y
------------------------
L
M
V
N
V
T
G
V
D
G
-
K
G
N
E
L
L
S
----------
P
H
Y
V
E
F
P
-
I
K
P
---
G
----
T
T
L
T
K
E
----
K
I
E
Y
Y
V
E
------
W
A
L
D
--
A
--
T
A
---
Y
K
------
E
---
F
R
V
V
E
L
D
---------------
P
S
-
A
K
I
E
V
T
-
Y
Y
D
-
K
N
K
K
--------
K
E
E
T
K
S
F
P
I
T
E
K
G
----
F
V
V
P
D
L
S
E
H
I
K
N
-
P
G
F
N
L
I
-
T
K
V
V
I
E
K
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
94.49
99%
-113
- C6 -
1C78
-
SAK_STAAU
A:
[7-136]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
K
-
Y
K
K
G
D
D
A
S
Y
F
E
P
T
G
P
Y
------------------------
L
M
V
N
V
T
G
V
D
G
-
K
G
N
E
L
L
S
----------
P
H
Y
V
E
F
P
-
I
K
P
---
G
----
T
T
L
T
K
E
----
K
I
E
Y
Y
V
E
------
W
A
L
D
--
A
--
T
A
---
Y
K
------
E
---
F
R
V
V
E
L
D
---------------
P
S
-
A
K
I
E
V
T
-
Y
Y
D
-
K
N
K
K
--------
K
E
E
T
K
S
F
P
I
T
E
K
G
----
F
V
V
P
D
L
S
E
H
I
K
N
-
P
G
F
N
L
I
-
T
K
V
V
I
E
K
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
94.49
99%
-113
- C6 -
1C77
-
SAK_STAAU
A:
[7-136]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
K
-
Y
K
K
G
D
D
A
S
Y
F
E
P
T
G
P
Y
------------------------
L
M
V
N
V
T
G
V
D
G
-
K
G
N
E
L
L
S
----------
P
H
Y
V
E
F
P
-
I
K
P
---
G
----
T
T
L
T
K
E
----
K
I
E
Y
Y
V
E
------
W
A
L
D
--
A
--
T
A
---
Y
K
------
E
---
F
R
V
V
E
L
D
---------------
P
S
-
A
K
I
E
V
T
-
Y
Y
D
-
K
N
K
K
--------
K
E
E
T
K
S
F
P
I
T
E
K
G
----
F
V
V
P
D
L
S
E
H
I
K
N
-
P
G
F
N
L
I
-
T
K
V
V
I
E
K
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
93.32
99%
-124
- C6 -
1C76
-
SAK_STAAU
A:
[16-136]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
Y
F
E
P
T
G
P
Y
------------------------
L
M
V
N
V
T
G
V
D
G
-
K
G
N
E
L
L
S
----------
P
H
Y
V
E
F
P
-
I
K
P
---
G
----
T
T
L
T
K
E
----
K
I
E
Y
Y
V
E
------
W
A
L
D
--
A
--
T
A
---
Y
K
------
E
---
F
R
V
V
E
L
D
---------------
P
S
-
A
K
I
E
V
T
-
Y
Y
D
-
K
N
K
K
--------
K
E
E
T
K
S
F
P
I
T
E
K
G
----
F
V
V
P
D
L
S
E
H
I
K
N
-
P
G
F
N
L
I
-
T
K
V
V
I
E
K
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
93.32
99%
-124
- C6 -
1C76
-
SAK_STAAU
A:
[16-136]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
Y
F
E
P
T
G
P
Y
------------------------
L
M
V
N
V
T
G
V
D
G
-
K
G
N
E
L
L
S
----------
P
H
Y
V
E
F
P
-
I
K
P
---
G
----
T
T
L
T
K
E
----
K
I
E
Y
Y
V
E
------
W
A
L
D
--
A
--
T
A
---
Y
K
------
E
---
F
R
V
V
E
L
D
---------------
P
S
-
A
K
I
E
V
T
-
Y
Y
D
-
K
N
K
K
--------
K
E
E
T
K
S
F
P
I
T
E
K
G
----
F
V
V
P
D
L
S
E
H
I
K
N
-
P
G
F
N
L
I
-
T
K
V
V
I
E
K
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
89.66
100%
-114
- C6 -
1BUI
1
SAK_BPP42
C:
[7-128]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
S
Y
F
E
P
T
G
P
Y
------------------------
L
M
V
N
V
T
G
V
D
S
-
K
G
N
E
L
L
S
----------
P
H
Y
V
E
F
P
-
I
K
P
---
G
----
T
T
L
T
K
E
----
K
I
E
Y
Y
V
E
------
W
A
L
D
--
A
--
T
A
---
Y
K
------
E
---
F
R
V
V
E
L
D
---------------
P
S
-
A
K
I
E
V
T
-
Y
Y
D
-
K
N
K
K
--------
K
E
E
T
K
S
F
P
I
T
E
K
G
----
F
V
V
P
D
L
S
E
H
I
K
N
-
P
G
F
N
L
I
-
T
K
V
V
I
E
K
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
85.69
100%
-64
- C6 -
1SSN
-
SAK_STAAU
A:
[2-136]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
S
S
---
F
D
K
G
K
-
Y
K
K
G
D
D
A
S
Y
F
E
P
T
G
P
Y
------------------------
L
M
V
N
V
T
G
V
D
S
-
K
G
N
E
L
L
S
----------
P
H
Y
V
E
F
P
-
I
K
P
---
G
----
T
T
L
T
K
E
----
K
I
E
Y
Y
V
E
------
W
A
L
D
--
A
--
T
A
---
Y
K
------
E
---
F
R
V
V
E
L
D
---------------
P
S
-
A
K
I
E
V
T
-
Y
Y
D
-
K
N
K
K
--------
K
E
E
T
K
S
F
P
I
T
E
K
G
----
F
V
V
P
D
L
S
E
H
I
K
N
-
P
G
F
N
L
I
-
T
K
V
V
I
E
K
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
HHSearch
54.06
19%
-87
- C6 -
1L4D
-
STRP_STREQ
B:
[1-120]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
N
S
Q
------------------------
L
V
V
S
V
A
G
T
V
E
-
G
T
N
Q
D
I
S
----------
L
K
F
F
E
I
D
-
L
T
S
---
R
PAMP
H
K
L
E
K
A
----
D
L
L
K
A
I
Q
------
E
Q
L
I
--
A
--
N
V
HSN
D
D
------
Y
---
F
E
V
I
D
F
A
---------------
S
D
-
A
T
I
T
D
R
-
N
G
K
-
V
----------------
Y
F
A
D
K
D
G
S
----
V
T
L
P
T
----
Q
P
V
-
Q
E
F
L
L
S
-
G
H
V
R
V
R
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
HHSearch
53.86
19%
-98
- C6 -
1L4Z
2
STRP_STREQ
B:
[15-134]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
N
S
Q
------------------------
L
V
V
S
V
A
G
T
V
E
-
G
T
N
Q
D
I
S
----------
L
K
F
F
E
I
D
-
L
T
S
---
R
AMP-
H
K
L
E
K
A
----
D
L
L
K
A
I
Q
------
E
Q
L
I
--
A
--
N
V
HSN
D
D
------
Y
---
F
E
V
I
D
F
A
---------------
S
D
-
A
T
I
T
D
R
-
N
G
K
-
V
----------------
Y
F
A
D
K
D
G
S
----
V
T
L
P
T
----
Q
P
V
-
Q
E
F
L
L
S
-
G
H
V
R
V
R
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
HHSearch
53.68
21%
-81
* C6 *
1BML
-
STRP_STREQ
C:
[14-164]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
N
S
Q
------------------------
L
V
V
S
V
A
G
T
V
E
-
G
T
N
Q
D
I
S
----------
L
K
F
F
E
I
D
-
L
T
S
R--
P
----
H
K
L
E
K
A
----
D
L
L
K
A
I
Q
------
E
Q
L
I
--
A
--
N
V
HSN
D
D
------
Y
---
F
E
V
I
D
F
A
---------------
S
D
-
A
T
I
T
-----
D
-
R
-------------
N
G
K
V
Y
F
A
D
K
D
G
----
S
V
T
L
P
---
T
Q
P
V
-
Q
E
F
L
L
S
-
G
H
V
R
V
R
P
Y
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
HHSearch
36.55
16%
-86
- C6 -
2AV5
-
RNP2_PYRFU
A:
[17-65]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
Y
I
A
F
K
-
V
I
S
---
E
----
N
Q
F
N
K
D
----
E
I
K
E
A
I
W
------
N
A
C
L
--
R
--
T
L
---
G
E
L
G
T
A
K
A
K
---
P
W
L
I
K
F
D
---------------
E
T
-
T
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
HHSearch
33.51
15%
-47
- C6 -
1QQR
-
STRP_STREQ
A:
[186-218]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
T
-
L
A
I
---
G
----
D
T
I
T
S
Q
----
E
L
L
A
Q
A
Q
------
S
I
L
N
--
K
--
N
H
---
P
G
----------
Y
T
I
Y
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
40
Fugue
33.08
17%
-22
* C7 *
3J6V
-
RT10_BOVIN
J:
[1-201]
----------------------------------------------------------------------------------------------------------------------------------
M
A
V
R
A
V
F
G
A
-
L
G
--
R
R
L
W
-
Q
G
S
K
N
F
S
V
S
S
S
R
S
N
---
I
A
K
N
D
G
F
L
L
S
T
S
M
K
W
V
Q
F
S
N
L
H
VDVPKDLTKPTITISDEPDTLYKR
L
S
V
L
V
K
G
H
D
K
-
A
V
L
D
S
Y
E
----------
Y
F
A
V
L
A
A
-
K
E
L
---
G
----
I
S
V
K
V
H
EPPR
K
I
E
R
F
T
L
LKSVHI
F
K
K
H
--
R
--
V
Q
---
Y
E
------
M
RTL
Y
R
C
L
E
L
E
---------------
H
L
-
T
G
S
T
A
D
-
V
Y
L
-
E
Y
I
Q
--------
R
N
L
P
E
G
V
A
M
E
V
T
K
----
T
R
L
E
Q
L
P
E
H
I
K
K
-
P
V
W
E
T
T
-
P
E
E
K
G
D
S
K
S------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
44
Fugue
30.65
18%
-5
- C7 -
3VWA
-
CEX1_YEAST
A:
[1-540]
PLHMSISNFQFP
Y
T
I
E
ETAITETAL
W
Q
C
F
D
G
T
R
K
ADSL
P
V
T
V
F
K
A
KRSPEN
E
S
L
I
L
N
A
V
H
K
S
K
I
LKIPGLCTVL
E
T
F
D
SDPQS
T
F
I
V
T
E
R
V
V
P
FPWDN
L
G
S
L
S
Q
N
K
F
G
V
E
L
G
I
S
Q
L
L
A
T
L
G
F
L
K
NFVLG
T
L
S
K
D
S
V
F
I
N
-
I
K
G
E
W
V
L
F
-
G
L
E
L
----
C
S
S
K
E
G
---
L
S
A
F
E
-
F
A
S
R
A
R
S
Y
Y
N
I
I
G
S
Q
L
------------------------
P
C
E
D
P
N
T
I
D
S
M
G
L
G
L
L
I
K
S
L
M
APSCLPK
D
W
I
V
N
V
N
M
I
S
D
---
G
KIT-
I
E
N
F
R
K
----
R
L
E
N
T
E
T
------
W
R
S
N
--
P
L
I
N
F
---
Y
Q
------
E
---
L
R
E
L
H
I
K
---------------
D
P
-
Q
G
K
L
V
V
M
S
N
L
-
E
N
L
Y
--------
L
E
S
R
E
I
F
R
N
L
T
P
G
MIEN
F
I
I
P
E
L
C
E
I
I
K
L
------
L
M
T
Q
S
I
S
S
N
A
SHK
L
V
P
F
L
A
I
V
L
D
L
T
S
E
T
NTFPVG
F
N
D
L
I
T
Q
S
F
K
LPD
R
Q
V
R
F
L
L
L
I
Y
L
PKLIGPLS
K
S
E
I
S
S
RI
Y
P
H
F
I
Q
G
LTDSD
A
T
L
R
L
Q
T
L
K
T
IPCIVSCLTERQLNNE
L
L
R
F
L
A
K
T
Q
V
DSD
V
E
I
R
T
W
T
V
I
I
I
S
K
I
STILSTS
V
G
N
R
S
N
I
L
A
T
A
F
T
K
S
L
K
DPQ
V
K
P
R
L
A
A
L
Y
G
L
E
K
S
I
ELFD
V
N
T
I
A
N
K
I
L
T
V
I
APGLLDKS
P
I
V
R
G
R
A
K
I
L
F
E
E
Y
L
E
K
L
E
K
E
A
Q
L
IQTN
18
PsiBlast_PDB
29.83
22%
5
- C6 -
2QFU
1
AROA_ECOLI
A:
[199-282]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
Y
------------------------
I
D
I
T
L
N
L
M
K
T
-
F
G
V
E
I
E
N
----------
Q
H
Y
Q
Q
F
V
-
V
K
G
---
G
----
Q
S
Y
-
Q
S
----
P
G
T
Y
L
V
E
------
G
--
D
--
A
--
S
S
---
A
S
------
Y
---
F
L
A
A
A
A
I
---------------
K
G
-
G
T
V
K
V
T
-
G
I
G
-
R
N
S
M
--------
Q
G
D
I
R
F
A
D
V
L
E
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
42
Fugue
29.60
14%
-16
* C8 *
3LYR
3
COE1_HUMAN
A:
[14-230]
----------------------------------------------------------------------------------------------------------------------------------------
G
S
G
M
N
A
--
V
R
T
W
M
Q
G
A
G
V
L
D
A
N
T
A
A
Q
S
GVG
L
A
R
A
H
-
F
E
K
Q
P
P
S
N
L
R
K
S
N
F
F
H
------------------------
F
V
L
A
L
Y
D
R
Q
G
-
Q
P
V
E
I
E
R
----------
T
A
F
V
G
F
V
-
E
K
E
KEA
N
----
S
E
K
T
N
N
----
G
I
H
Y
R
L
Q
------
L
L
Y
S
NG
I
--
R
T
---
E
Q
------
D
---
F
Y
V
R
L
I
D
SMTKQAIVYEGQDKN
P
E
M
C
R
V
L
L
T
-
H
E
I
M
C
S
R
C
C
D
KKSC
G
N
R
N
E
T
P
S
D
P
V
I
I
D
R
F
F
L
K
F
F
L
K
C
N
Q
N
C
L
K
D
M
R
R
F
Q
V
V
-
V
S
T
T
V
N
V
D
GHVL
A
V
S
D
N
M
F
V
H
NN----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
PsiBlast_PDB
29.60
22%
6
- C6 -
2QFT
3
AROA_ECOLI
A:
[199-282]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
Y
------------------------
I
D
I
T
L
N
L
M
K
T
-
F
G
V
E
I
E
N
----------
Q
H
Y
Q
Q
F
V
-
V
K
G
---
G
----
Q
S
Y
-
Q
S
----
P
G
T
Y
L
V
E
------
G
--
D
--
A
--
S
S
---
A
S
------
Y
---
F
L
A
A
A
A
I
---------------
K
G
-
G
T
V
K
V
T
-
G
I
G
-
R
N
S
M
--------
Q
G
D
I
R
F
A
D
V
L
E
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
PsiBlast_PDB
29.48
22%
6
- C6 -
2QFQ
2
AROA_ECOLI
A:
[199-282]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
Y
------------------------
I
D
I
T
L
N
L
M
K
T
-
F
G
V
E
I
E
N
----------
Q
H
Y
Q
Q
F
V
-
V
K
G
---
G
----
Q
S
Y
-
Q
S
----
P
G
T
Y
L
V
E
------
G
--
D
--
A
--
S
S
---
A
S
------
Y
---
F
L
A
A
A
A
I
---------------
K
G
-
G
T
V
K
V
T
-
G
I
G
-
R
N
S
M
--------
Q
G
D
I
R
F
A
D
V
L
E
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------