@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : SA1888_1: (2016-03-29 )
MKRPEKIQNVVKLLSSLGVNIKKTKSRLDIINTLPASNKVSHELK
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------....----.....10.....--...20....--....30........40....-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MKR
P
----
E
K
I
Q
N
V
V
K
L
L
S
S--LGV
N
I
K
K
T
K
--
S
RL
D
I
I
NTLPASNKVSHELK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
85.16
19%
-141
- C2 -
3ZH4
-
?
A:
[47-80]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
----
S
D
V
A
S
L
V
E
I
M
E
L
--
M
G
A
T
V
K
R
Y
D
--
D
V
L
E
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
72.60
26%
-54
- C2 -
3ZPJ
-
?
A:
[1-356]
M
T
T
L
E
E
I
N
L
L
V
E
R
GY
Y
E
E
A
L
A
K
V
YEIED
P
I
E
Q
V
Q
V
L
T
K
I
V
V
T
I
Y
Q
H
DGPMEW
I
P
S
I
M
E
D
A
M
Y
I
A
K
K
LRD
P
A
N
K
A
V
A
Y
S
I
I
A
S
T
L
A
I
M
EY
E
E
D
A
M
D
F
F
N
R
A
I
D
E
A
N
E
IES
P
I
E
K
G
M
V
L
S
T
L
A
Y
H
L
A
I
A
GY
P
D
N
A
L
E
I
F
N
I
A
F
D
T
I
I
G
AETS
Y
T
H
K
V
D
G
I
L
R
I
G
D
L
L
E
K
A
G
D
T
LPSNEA
M
D
F
Y
K
M
A
F
D
I
F
D
K
L
HV
N
Q
R
A
A
I
V
E
K
K
I
E
L
A
K
T
V
YDVGL
P
Q
I
R
A
A
L
L
K
GK
N
H
Y
A
L
A
I
I
K
K
K
YSG
V
M
R
L
I
G
E
L
E
V
A
L
W
M
K
R
V
NNME
Y
L
D
V
V
D
K
A
F
E
C
C
E
S
P
RFT
D
V
N
V
Q
H
I
A
R
L
L
T
E
--
L
G
----
N
L
R
--
R
A
L
K
F
A
K
E
I
Q
N
I
H
K
R
S
E
A
L
K
A
I
A
L
E
L
V
R
R
KKFEE
V
K
K
I
I
E
S
IPD
P
K
I
R
E
E
A
L
N
E
I
GTIE----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
68.09
19%
-112
- C2 -
1RF6
-
AROA_STRPN
A:
[45-71]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
----
E
D
V
L
S
T
M
Q
V
F
R
D
--
L
G
V
E
I
E
D
K
D
--
G
V
I
T
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
66.56
19%
-117
- C2 -
2O0B
-
AROA_MYCTU
A:
[52-78]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
----
R
D
T
E
L
M
L
D
A
L
Q
T
--
L
G
L
R
V
D
G
V
G
--
S
E
L
T
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
64.28
23%
-41
- C2 -
1K9D
13
?
A:
[5-679]
-------------------------------------------------------------------------------------------------------YEPCWLRYERKDQYS
R
L
R
F
E
E
I
V
A
KRTS
P
I
F
Q
A
A
V
E
E
L
Q
K
G
L
R
S
M
ME
I
E
P
Q
V
V
QEVNETAN
S
I
W
L
G
T
LEDEEFER
P
L
E
G
T
LVHPE
G
Y
V
I
R
S
DVDDG
P
F
R
I
Y
I
I
G
KT
D
A
G
V
L
Y
G
V
F
H
F
L
R
L
L
Q
M
GENIA
Q
L
S
I
I
E
Q
P
KNRLR
M
I
N
H
WDNMDGSIERGYAGRSIFFVDDQF
V
K
Q
N
----
Q
R
I
K
D
Y
A
R
L
L
A
S
--
V
G
I
N
---------
A
I
S
I
N
N
V
N
V
H
K
T
E
T
K
L
I
T
DHF
L
P
D
V
A
E
V
A
D
I
F
R
T
Y
G
I
K
T
F
L
S
I
N
YA
S
P
I
E
I
GGLPTADPLD
P
E
V
R
W
W
W
K
E
T
A
K
R
I
Y
Q
Y
I
P
DFG
G
F
V
V
K
APGPFTYGRD
H
A
E
G
A
N
M
L
A
E
A
L
APFG
G
L
V
I
W
R
CFVYNCQQDWRDRTTDRAK
A
A
Y
D
H
F
K
PLDGQFREN
V
I
L
Q
I
K
NGPMDFQVREPVSPLFGAMPK
T
N
Q
M
M
E
V
Q
ITQEYTGQQKHLCFL
I
P
Q
W
K
E
V
L
D
FDTYAKGKGSE
V
K
K
V
I
D
GSLFDYR
Y
S
G
I
A
G
V
S
NIGSDPNWTGHTLA
Q
A
N
L
Y
G
F
G
R
L
A
W
NPDLS
A
E
E
I
A
N
E
W
V
V
Q
T
FGDD
S
Q
V
V
E
T
I
S
W
M
L
L
S
S
W
R
I
Y
E
N
Y
T
SPLGVGWMVNPGHHYGPNVDGYEYSHWGTYHYADRD
G
I
G
V
DRTVATGTG
Y
T
A
Q
Y
F
P
E
N
A
A
M
Y
E
SLDTCPDELLLFF
H
H
V
P
YTHRLHSGET
V
I
Q
H
I
Y
N
T
H
F
E
G
V
E
Q
A
K
Q
L
R
K
R
W
E
Q
L
KGKID
E
K
R
Y
H
D
V
L
E
R
L
T
I
Q
V
E
H
A
K
E
W
R
D
V
I
N
T
Y
F
Y
R
K
SGIDDQYGRKIYR
28
Fugue
63.31
17%
-34
- C2 -
2YF2
11
?
A:
[7-63]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
D
V
C
----
G
E
V
A
Y
I
Q
S
V
V
S
D
--
C
H
V
P
T
E
D
V
K
--
T
L
L
E
I
R
K
L
F
L
E
I
Q
K
L
K
V
E
L
Q
G
L
S
K
E
F
L
E
H
I
L
H-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
60.28
17%
-92
- C2 -
2PQC
1
AROA_AGRSC
A:
[349-377]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
S
----
D
R
L
S
A
V
A
N
G
L
K
L
--
N
G
V
D
C
D
E
G
E
--
T
S
L
V
V
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
60.19
19%
-83
- C2 -
3RMT
2
AROA1_BACHD
A:
[50-80]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
----
A
D
C
L
S
T
I
S
C
F
Q
K
--
L
G
V
S
I
E
Q
A
E
--
E
R
V
T
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
60.01
17%
-60
- C2 -
1JQE
2
HNMT_HUMAN
A:
[13-292]
------------------------------------------------------------------------------------------G
K
Y
V
E
S
F
R
R
F
L
N
H
S
T
E
H
Q
C
M
Q
E
F
M
D
K
K
L
P
G
I
I
G
RIGDTKS
E
I
K
I
L
S
I
GGGAG
E
I
D
L
Q
I
L
S
K
V
Q
A
Q
Y
PG
V
C
I
N
N
E
V
VEPS
A
E
Q
I
A
K
Y
K
E
L
V
A
K
ISNLEN
V
K
F
A
W
H
KET
S
S
E
Y
Q
S
R
M
L
EKK
E
L
Q
K
W
D
F
I
H
M
I
QMLYYVKD
I
P
A
T
L
K
F
F
H
S
L
LGTN
A
K
M
L
I
I
V
V
SGSS
G
W
D
K
L
W
K
K
YGSRFPQDD
L
C
Q
Y
----
I
T
S
D
D
L
T
Q
M
L
D
N
--
L
G
L
K
Y
E
C
Y
D
L
L
S
T
M
D
I
S
D
C
F
I
D
G
N
E
N
G
D
L
L
W
D
F
L
T
ETCNFNATAP
P
D
L
R
A
E
L
G
K
D
L
Q
EPEF
S
A
K
K
EG
K
V
L
F
NN
T
L
S
F
I
V
I
E
A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
59.52
24%
-117
- C2 -
2K6X
-
SIGA_THEMA
A:
[67-87]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
L
I
E
R
I
H
E
E
L
E
K
--
H
G
I
N
I
V
E
N
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
59.05
11%
-80
- C2 -
3NVS
3
AROA_VIBCH
A:
[368-395]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
R
L
A
A
M
A
T
E
L
R
K
--
V
G
A
T
V
E
E
G
E
--
D
F
I
V
I
T
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
58.06
7%
-120
- C2 -
3R38
-
MURA1_LISMO
A:
[72-100]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
----
S
D
V
F
T
I
N
E
V
L
K
Y
--
L
N
A
D
V
S
F
V
N
--
D
E
V
T
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
54.16
16%
-81
- C2 -
1UD2
-
?
A:
[80-98]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
----
A
Q
L
E
R
A
I
G
S
L
K
S
--
N
D
I
N
V
Y
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
53.04
30%
-26
- C2 -
1IN0
-
Y1034_HAEIN
A:
[135-159]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
S
R
----
D
D
L
Q
A
V
I
Q
L
V
K
S
AE
L
G
Q
P
F
Q
F
N
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
51.44
21%
-71
- C2 -
1WPC
-
AMT6_BACS7
A:
[82-100]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
----
S
Q
L
Q
A
A
V
T
S
L
K
N
--
N
G
I
Q
V
Y
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
50.53
24%
14
- C2 -
2KIX
-
?
A:
[1-33]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
L
E
P
----
F
Q
I
L
S
I
S
S
F
I
L
S
--
A
L
H
F
I
A
W
T
I
--
G
H
L
N
Q
I
K
R
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
49.91
16%
-82
- C2 -
1BF2
-
ISOA_PSEAY
A:
[272-290]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
----
A
E
F
Q
A
M
V
Q
A
F
H
N
--
A
G
I
K
V
Y
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
48.10
10%
-81
- C2 -
1MXG
4
?
A:
[86-105]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
----
E
E
L
V
R
L
I
Q
T
A
H
A
--
Y
G
I
K
V
I
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
47.94
10%
-65
- C2 -
1D3C
-
CDGT2_BACCI
A:
[114-133]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
I
----
A
D
F
Q
N
L
I
A
A
A
H
A
--
K
N
I
K
V
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
45.76
14%
-45
- C2 -
3EYY
3
?
A:
[3-30]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
T
D
W
K
S
D
L
R
Q
--
R
G
Y
R
--
L
T
P
--
Q
R
Q
L
V
L
E
A
V
D
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------