@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : jhp_0472: (2015-12-15 )
MFEKWIGLTLLLSSLGYPCQKVSISFKQYENLIHIHQKGCNNEVVCRTLISIALLESSLGLNNKREKSLKDTSYSMFHITLNTAKKFYPTYSKTLLKTKLLNDVGFAIQLAKQILKENFDYYHQKHPNKSVYQLVEMAIGAYNGGMKHNPNGAYMKKFRCIYSQVRYNE
Atome Classification :
(20 SA)
----------------------------------.........10........20........30.-.......--40-.--........50------.......-----.60.-.-..-.-.-----------------------------------------..70........80.-.....------.------.----90----..--.-..---...100-.-...-..-.110--.........120-.....-----.-----.130.......140...-----------...--.----------150.......160..--.....------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------M
F
E
K
W
I
G
L
T
L
L
L
S
S
LGYP
C
Q
K
V
S
I
S
F
K
Q
Y
E
N
L
-
I
H
I
H
QKG--C--
N
--
N
E
V
V
C
R
T
L
I
S
------
I
A
L
L
E
S
S-----LGLN-
N
-
K
R
-E-K-----------------------------------------SLKDTS
Y
S
M
F
H
I
T
LN-
T
A
K
K
F------Y------P----
T
Y
----
S
K
--
T
-
L
L
---
K
T
K
L
L
N
-D-V
G
F
-
A
I
-
Q
L
----
A
K
Q
I
L
K
E
N
F
D
Y
Y
-
H
QKHP-----
N
-----
K
S
V
Y
Q
L
V
E
M
A
I
G
AYNGG-----------MKH--N----------P
N
G
A
Y
M
K
K
F
R
C
I
Y
S
Q
--VRYNE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
38
HHSearch
72.66
18%
-55
- C4 -
1GBS
-
LYG_CYGAT
A:
[52-181]
---------------------------------------------------------------------
I
K
K
V
G
--
E
--
K
--
L
C
V
E
P
A
V
I
A
G
------
I
I
S
R
E
S
H
-----
A
G
K
V
-
L
-
K
N
-
G
-
W
-----------------------------------------
G
D
R
G
N
G
F
G
L
M
Q
V
D
K
R
-
S
H
K
P
--------------------
Q
--------
G
----------
T
W
-
N
-
G
E
V
-
H
I
-
T
Q
----
G
T
T
I
L
T
D
F
I
K
R
I
-
Q
K
K
F
P
SWT
K
D
Q
-----
Q
----
L
-
K
G
G
I
S
A
Y
N
A
G
-----------
A
G
N
--
V
RSYARMDIGT
T
H
D
D
Y
A
N
D
V
V
A
R
A
Q
Y
--
Y
K
Q
H
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
54
Fugue
71.24
17%
-38
- C3 -
4CI0
4
?
A:
[2-386]
S
E
R
I
V
I
S
PTSRQE
G
H
A
E
L
V
M
E
V
D
DEGIVT
K
G
R
Y
F
S
I
T
P
V
R
G
L
E
K
M
V
T
G
------------
K
A
P
E
T
A
-
P
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M
V
Q
R
I
--
C
--
G
--
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C
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H
T
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A
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------
V
E
A
I
D
D
S
-----
L
D
I
E
V
P
-
K
A
-
G
-
R
-----------------------------------------
L
L
R
E
L
T
L
A
A
H
H
V
--
N
-
S
H
A
I
H
------
H
------
F
----
L
I
----
A
P
--
D
-
F
V
---
P
E
N
L
M
A
-
D
-
A
I
N
-
S
V
-
S
E
----
I
R
K
N
A
Q
Y
V
V
D
M
V
-
A
G
E
G
I
-----
H
-----
P
S
D
V
R
I
---------
G
G
-----------
M
A
D
--
N
----------
I
T
E
L
A
R
K
R
L
Y
A
R
L
K
Q
--
L
K
P
K
V
N
E
H
V
E
L
M
I
G
L
I
E
D
K
GLPEGLGVHN
Q
P
T
L
A
SHQIYGDRTKFDLDR
F
T
E
I
M
PESWYDD
P
E
I
A
K
R
AC
S
T
I
P
L
Y
DG
R
N
V
E
V
G
P
R
A
R
M
V
E
FQGFKERG
V
V
A
Q
H
V
A
R
A
L
E
M
K
T
A
L
S
R
A
I
E
I
L
D
E
LDTSAPV
R
A
D
F
D
ERGTG
K
L
G
I
G
A
I
E
A
PR
G
L
D
V
H
M
A
K
V
E
NGKIQ
F
Y
S
A
L
V
P
T
T
W
N
I
P
T
M
G
P
A
T
EGFHHEY
G
P
H
V
I
R
A
Y
DPCLSCATH
51
HHSearch
69.29
19%
-78
- C4 -
3BKH
-
?
A:
[106-196]
-------------------------------------------------------------------------
E
--
N
--
A
--
T
G
V
R
S
Q
L
L
L
T
------
F
A
S
I
E
S
A
-----
F
D
Y
E
-
I
-
K
A
-
K
---------------------------------------------
T
S
S
A
T
G
W
F
Q
F
L
T
G
-
T
W
K
T
M
------
I
------
E
----
N
Y
----
G
M
KY
G
-
V
L
TDP
T
G
A
L
R
K
-
D
-
P
R
I
-
S
A
-
L
M
----
G
A
E
L
I
K
E
N
M
N
I
L
-
R
P
V
L
K
-----
R
-----
E
P
T
D
T
D
L
Y
L
A
H
F
F
G
P
G
A
-----------
A
R
R
--
F
----------
L
T
T
G
Q
N
E
L
A
A
T
H
F
P
K
--
E
A
Q
A
N
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
58
Fugue
66.27
12%
-58
- C4 -
3W6B
1
?
A:
[24-183]
-------------------------------------------
P
P
T
N
P
P
T
T
V
T
K
P
A
E
V
P
S
R
I
W
T
Y
V
-
M
N
A
D
N
A
Y
--
G
--
K
--
G
G
D
F
A
L
L
L
S
A
------
V
I
K
K
E
S
Y
-----
F
G
D
G
-
L
-
S
G
-
S
-
P
-----------------------------------------
S
---
A
G
D
G
L
M
Q
V
E
P
N
-
T
R
N
A
Y
------
L
------
S
----
Q
F
----
S
A
--
K
-
Y
G
---
H
A
Y
N
H
S
-
S
-
E
Q
D
-
Q
V
-
Y
M
----
G
S
L
I
L
N
E
K
I
V
R
F
-
G
S
--------------------
I
Y
S
G
L
L
H
Y
N
G
G
DYWYPGATDSY
G
R
P
--
I
----------
L
A
D
Q
Y
A
N
T
V
Y
A
Q
Y
K
S
Y
G
G
R
Y
S
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
44
HHSearch
64.65
19%
-64
- C4 -
1QSA
6
SLT_ECOLI
A:
[459-558]
-----------------------------------------------------------------------
R
Y
T
--
S
--
G
--
K
E
I
P
Q
S
Y
A
M
A
------
I
A
R
Q
E
S
A
-----
W
N
P
K
-
V
-
K
S
-
P
----------------------------------------------
V
G
A
S
G
L
M
Q
I
M
P
G
-
T
A
T
H
T
------
V
------
K
----
M
F
----
S
I
--
P
G
Y
S
---
S
P
G
Q
L
L
-
D
-
P
E
T
-
N
I
-
N
I
----
G
T
S
Y
L
Q
Y
V
Y
Q
-----
Q
F
G
-----
N
-----
N
----
R
-
I
F
S
S
A
A
Y
N
A
G
-----------
P
G
R
--
V
----------
R
T
W
L
G
N
S
A
G
R
I
D
A
V
A
--
F
V
E
S
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
46
HHSearch
63.46
16%
-44
- C4 -
3GXR
2
?
A:
[52-183]
-----------------------------------------------------------------------
N
V
A
--
K
--
K
--
H
V
V
D
P
A
V
I
A
A
------
I
I
S
R
E
S
R
AGNVI
F
N
T
T
-
P
-
P
G
-
W
-
G
------------------------------------------
D
N
Y
N
G
F
G
L
M
Q
V
D
K
R
-
Y
H
E
P
--------------------
R
-----------------
G
-
A
W
-
N
-
S
E
E
-
H
I
-
D
Q
----
A
T
G
I
L
V
N
F
I
Q
L
I
-
Q
K
K
F
P
-----
S
WS
T
E
Q
Q
----
L
-
K
G
A
I
A
A
Y
N
T
G
-----------
D
G
R
--
V
ESYESVDSRT
T
G
K
D
Y
S
N
D
V
V
A
R
A
Q
W
--
Y
K
K
N
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
48
HHSearch
61.73
19%
-70
- C4 -
1HML
3
LALBA_HUMAN
A:
[20-116]
-------------------------------------------------------
K
Q
F
T
K
C
E
L
S
Q
L
-
L
K
D
I
D
G
Y
--
G
--
G
--
I
A
L
P
--
E
L
I
C
------
T
M
F
H
T
S
G
-----
Y
D
T
Q
-
A
-
I
V
-
E
-
N
------------------------------------------
N
E
S
T
E
Y
G
L
F
Q
I
S
N
K
-
L
W
C
K
S
------
S
QVPQSR
N
----
I
C
--------
D
-
I
S
---
C
D
K
F
L
D
D
D
-
I
T
D
-
D
I
-
M
C
----
A
K
K
I
L
D
I
K
G
I
D
Y
-
W
L
A
H
K
-----
A
-----
L
C
T
E
K
L
E
Q
W
L
C
E
K
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
45
HHSearch
61.36
22%
-46
- C4 -
1B9O
1
LALBA_HUMAN
A:
[19-113]
----------------------------------------------------------------------------------
G
G
I
A
L
P
E
L
I
C
------
T
M
F
H
T
S
G
-----
Y
D
T
Q
-
A
-
I
V
-
E
-
N
------------------------------------------
D
E
S
T
E
Y
G
L
F
Q
I
S
N
K
-
L
W
C
K
S
------
S
QVPQSR
N
----
I
C
--------
D
-
I
S
---
C
D
K
F
L
D
D
D
-
I
T
D
-
D
I
-
M
C
----
A
K
K
I
L
D
I
---------
K
G
I----
D
-----
Y
----
W
--
L
A
H
K
A
L
C
T
E
-----------
K
L
E
--
Q
----------
W
L
C
E
K
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
37
HHSearch
60.79
14%
-74
- C4 -
3W6B
1
?
A:
[51-178]
-----------------------------------------------------------------------
N
A
Y
--
G
--
K
--
G
G
D
F
A
L
L
L
S
A
------
V
I
K
K
E
S
Y
-----
F
G
D
G
-
L
S
G
S
-
P
----------------------------------------------
S
A
G
D
G
L
M
Q
V
E
P
N
-
T
R
N
A
Y
------
L
------
S
----
Q
F
----
S
A
--
K
-
Y
G
---
H
A
Y
N
H
S
-
S
-
E
Q
D
-
Q
V
-
Y
M
----
G
S
L
I
L
N
E
K
I
V
-----
R
F
G
-----------
S
----
I
-
Y
S
G
L
L
H
Y
N
G
G
-----------
D
Y
W
YP
G
ATDSYGRPI-
L
A
D
Q
Y
A
N
T
V
Y
A
Q
Y
K
S
--
Y
G
G
R
Y
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
42
HHSearch
56.90
22%
-61
- C4 -
2Z2F
3
LYSC2_BOVIN
A:
[22-102]
-----------------------------------------------------------------------------------
G
V
S
L
A
N
W
L
C
------
L
T
K
W
E
S
S
-----
Y
N
T
K
-
A
-
T
N
-
Y
-
N
P----------------------------------------
S
S
E
S
T
D
Y
G
I
F
Q
I
N
S
K
-
W
W
C
N
D
------
G
KTPNAV
D
----
G
C
--------
H
-
V
S
---
C
S
E
L
M
E
N
D
-
I
A
K
-
A
V
-
A
C
----
A
K
H
I
V
S
E
Q
G
I
T
A
-
W
V
A
W
K
-----
S
-----
H
C
R
D
H
D
V
S
S
Y
V
E
G
C
T
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
40
HHSearch
54.28
22%
-52
- C4 -
1IIZ
-
LYS_ANTMY
A:
[19-97]
-----------------------------------------------------------------------------------
E
N
L
M
R
D
W
V
C
------
L
V
E
N
E
S
A
-----
R
Y
T
D
-
K
-
I
A
N
V
-
N
-----------------------------------------
K
N
G
S
R
D
Y
G
L
F
Q
I
N
D
K
Y
W
C
S
K
G
------
S
TPG---
K
----
D
C
--------
N
-
V
T
---
C
S
Q
L
L
T
D
D
-
I
T
V
-
A
S
-
T
C
----
A
K
K
I
Y
K
R
T
K
F
D
A
-
W
S
G
W
D
-----
N
-----
H
C
N
H
S
N
P
D
I
S
S
C
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
36
HHSearch
53.57
17%
-43
- C4 -
1LMQ
1
LYSC2_ONCMY
A:
[14-99]
-----------------------------------------------------------------------
A
S
G
--
M
--
D
GY
A
G
N
S
L
P
N
W
V
C
------
L
S
K
W
E
S
S
-----
Y
N
T
Q
-
A
-
T
N
-
R
-
N
-----------------------------------------
T
D
G
S
T
D
Y
G
I
F
Q
I
N
S
R
-
Y
W
C
D
D
------
G
RTPGAK
N
----
V
C
--------
G
-
I
R
---
C
S
Q
L
L
T
-
D
-
D
L
T
-
V
A
I
R
C
----
A
K
R
V
V
L
D
P
N
G
I
G
-
A
W
V
A
W
-----
R
-----
L
H
C
Q
N
Q
D
L
R
S
Y
V
A
G
C
G
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
49
HHSearch
51.94
22%
-42
* C4 *
2FBD
1
LYS1_MUSDO
A:
[21-98]
-------------------------------------------------------------------------------------
E
L
P
Q
W
T
C
------
I
A
E
H
E
S
S
-----
Y
R
T
N
-
V
-
V
G
-
P
T
N
-----------------------------------------
S
N
G
S
N
D
Y
G
I
F
Q
I
N
N
Y
-
Y
W
C
Q
P
------
S
------
N
GRFS
Y
N
----
E
C
--
H
-
L
S
---
C
D
A
L
L
T
-
D
N
I
S
N
-
S
V
-
T
C
----
A
R
K
I
K
S
Q
Q
G
W
T
A
-
W
S
T
W
K
-----
Y
-----
C
S
G
S
L
P
S
I
N
D
C
F
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
PsiBlast_PDB
51.54
39%
-117
- C5 -
2ZXR
-
RECJ_THET8
A:
[245-267]
--------------------------------------
W
V
G
L
R
L
L
A
E
A
V
G
Y
T
G
K
A
V
E
V
A
F
R
I
A
P
R
I
-
N
A
A
S
R
L
G
--
E
--
A
--
E
K
A
L
R
L
L
L
T
D
------
D
A
A
E
A
Q
A
-----
L
V
G
E
-
L
-
H
R
-
L
-
N
-----------------------------------------
A
R
R
Q
T
L
E
E
A
M
L
R
K
L
L
-
P
Q
A
D
P
------
E
------
A
----
K
A
----
I
V
--
L
-
L
D
---
P
E
G
H
P
G
-
V
-
M
G
I
-
V
A
-
S
R
----
I
L
E
A
T
L
R
P
V
F
L
V
-
A
Q
G
K
G
-----
T
-----
V
R
S
L
A
P
I
S
A
V
E
A
L
R
S
A
E
-----------
D
L
L
--
L
----------
R
Y
G
G
H
K
E
A
A
G
F
A
M
D
E
--
A
L
F
P
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
62
Fugue
51.40
15%
-61
- C2 -
3F1J
4
MATRX_BDV
A:
[3-142]
----------------------------------
S
K
H
S
Y
V
E
L
K
D
K
V
I
V
P
G
W
P
------------
T
L
M
L
E
I
D
F
V
G
--
G
--
T
--
S
R
---
N
Q
F
L
N
------
I
P
F
L
S
V
K
-----
E
P
L
Q
-
L
-
P
R
-
E
-
K
-----------------------------------------
K
L
T
D
Y
----
F
T
I
D
V
E
-
P
-----------------
A
----
G
H
----
S
L
--
V
-
N
I
---
Y
F
Q
I
D
D
-
F
-
L
L
L
-
T
L
-
N
S
----
L
-
S
V
Y
K
D
P
I
R
K
Y
M
F
L
R
L
N
-----
K
-----
E
Q
S
K
H
A
I
N
A
A
F
N
V
F
S
Y
R
-----------
L
R
N
--
I
----------
G
V
G
P
L
G
P
D
I
R
S
S
G
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
HHSearch
51.12
16%
-51
- C4 -
2GV0
-
LYSC_PELSI
A:
[12-103]
--------------------------------------------------------------------
E
F
K
R
H
G
--
M
DG
Y
--
H
G
Y
S
L
G
D
W
V
C
------
T
A
K
H
E
S
N
-----
F
N
T
A
-
A
-
T
N
-
Y
-
N
R----------------------------------------
G
D
Q
S
T
D
Y
G
I
L
Q
I
N
S
R
-
W
W
C
N
D
GKTPKA
K
------
N
----
A
C
--------
G
-
I
E
---
C
S
E
L
L
K
-
A
-
D
I
T
A
A
V
-
N
C
----
A
K
R
I
V
R
D
P
N
G
M
G
-
A
W
V
A
W
-----
T
-----
K
Y
C
K
G
K
D
V
S
Q
W
I
K
G
C
K
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
41
HHSearch
50.62
17%
-40
- C4 -
1QQY
-
LYSC1_CANFA
A:
[11-101]
--------------------------------------------------------------------
K
L
K
S
M
G
--
M
--
D
GF
H
G
Y
S
L
A
N
W
V
C
------
M
A
E
Y
E
S
N
-----
F
N
T
Q
-
A
-
F
N
G
R
-
N
-----------------------------------------
S
N
G
S
S
D
Y
G
I
F
Q
L
N
S
K
-
W
W
C
K
S
------
N
------
S
----
H
S
SAN-
A
C
--
N
-
I
M
---
C
S
K
F
L
D
D
N
-
I
D
D
-
D
I
-
A
C
----
A
K
R
V
V
K
D
P
N
G
M
S
-
A
W
V
A
W
-----
V
-----
K
H
C
K
G
K
D
L
S
K
Y
L
A
S
C
N
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
47
HHSearch
48.64
18%
-28
- C4 -
2NWD
-
LYSC_HUMAN
X:
[11-101]
--------------------------------------------------------------------
T
L
K
R
L
G
MD
G
--
Y
--
R
G
I
S
L
A
N
W
M
C
------
L
A
K
W
E
S
G
-----
Y
N
T
R
-
A
-
T
N
-
Y
-
N
A----------------------------------------
G
D
R
S
T
D
Y
G
I
F
Q
I
N
S
R
-
Y
W
C
N
D
------
G
------
K
----
T
P
GAVN
A
C
--
H
-
L
S
---
C
S
A
L
L
Q
D
N
-
I
A
D
-
A
V
-
A
C
----
A
K
R
V
V
R
D
P
Q
G
I
R
-
A
W
V
A
W
-----
R
-----
N
R
C
Q
N
R
D
V
R
Q
Y
V
Q
G
C
G
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
HHSearch
45.78
15%
-18
- C4 -
3B72
5
LYSC_CHICK
A:
[28-135]
-----------------------------------------------------------------------
A
A
M
--
K
--
R
--
H
G
L
D
N
Y
R
G
Y
S
L
G
N
W
V
C
A
A
K
F
E
S
N
-----
F
N
T
Q
-
A
-
T
N
-
R
-
N
-----------------------------------------
T
D
G
S
T
D
Y
G
I
L
Q
I
N
S
R
-
W
W
C
N
D
------
G
-----------
R
T
--------
P
-
G
S
----
R
N
L
C
N
-
I
-
P
C
S
-
A
L
-
L
S
SDI
T
A
S
V
N
C
A
K
K
I
V
-----
S
D
G
-----
N
-----
G
----
M
--
N
A
W
V
A
W
R
N
R
-----------
C
K
G
--
T
----------
D
V
Q
A
W
I
R
G
C
R
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
50
HHSearch
45.60
12%
-35
- C4 -
1QUS
3
MLTB_ECOLI
A:
[104-242]
-----------------------------------------------------------------------
R
A
W
--
Q
--
V
--
Y
G
V
P
P
E
I
I
V
G
------
I
I
G
V
E
T
R
-----
W
G
R
V
-
M
-
G
K
-
T
-
R
I
L
D
A
L
A
T
L
S
F
NYPRR
A
E
Y
F
S
G
E
L
E
T
F
L
L
M
A
R
D
E
QDDPLN
L
K
G
S
F
A
G
A
M
G
Y
G
Q
F
M
P
S
-
S
Y
K
Q
Y
------
A
------
V
----
D
F
----
S
---
G
-
D
G
---
H
I
N
L
-
W
-
D
-
P
V
D
-
A
I
-
G
S
----
V
A
N
Y
F
K
A
H
G
W
-----
V
K
G
-----
D
-----
Q
----
V
-
A
V
M
A
N
G
Q
A
P
G
-----------
L
P
N
--
G
----------
F
K
T
K
Y
S
I
S
Q
L
A
A
A
G
L
--
T
P
Q
Q
P
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------