@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo0741: (2016-03-18 )
MKFDDSKPIYKQIVHYIHTEIVTGTYEAGDKLLSVRELATKLEVNPTTIQRAYAELEETEIIYTVRGTGKYLTEDKRRIEQLENDIAKQLTENFISEMSKLGINKEKIIAWVKKVEEVEVNVSGK
Atome Classification :
(20 SA)
---........---.10........20........30........40........50........60........-70........--80--.-.-.....-.90..------......100.......110.......120...--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---MKFDDSK
P
---
I
Y
K
Q
I
V
H
Y
I
H
T
E
I
VTGTYEAG
D
K
L
L
S
V
R
E
L
A
T
KLEV
N
P
T
T
I
Q
R
A
Y
A
ELEE
T
E
I
I
Y
T
VRGTG-KY
L
T
E
D
K
R
R
I
--
E
Q
--
L
-
E
-
N
D
I
A
K
-
Q
L
T
E
N
------
F
I
S
E
M
S
KLGI
N
K
E
K
I
I
A
W
V
K
K
V
E
E
V
E
V
NVSGK--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
98.90
99%
-124
- C3 -
4R1H
1
?
A:
[6-121]
-----
F
D
D
S
K
P
---
I
Y
K
Q
I
V
H
Y
I
H
T
E
I
V
T
G
T
Y
E
A
G
D
K
L
L
S
V
R
E
L
A
T
K
L
E
V
N
P
T
T
I
Q
R
A
Y
A
E
L
E
E
T
E
I
I
Y
T
V
R
G
T
G
-
K
Y
L
T
E
D
K
R
R
I
--
E
Q
--
L
-
E
-
N
D
I
A
K
-
Q
L
T
E
N
------
F
I
S
E
M
S
K
L
G
I
N
K
E
K
I
I
A
W
V
K
K
V
E
E
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
PsiBlast_CBE
98.72
99%
-130
- C3 -
4R1H
1
?
B:
[6-119]
-----
F
D
D
S
K
P
---
I
Y
K
Q
I
V
H
Y
I
H
T
E
I
V
T
G
T
Y
E
A
G
D
K
L
L
S
V
R
E
L
A
T
K
L
E
V
N
P
T
T
I
Q
R
A
Y
A
E
L
E
E
T
E
I
I
Y
T
V
R
G
T
G
-
K
Y
L
T
E
D
K
R
R
I
--
E
Q
--
L
-
E
-
N
D
I
A
K
-
Q
L
T
E
N
------
F
I
S
E
M
S
K
L
G
I
N
K
E
K
I
I
A
W
V
K
K
V
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
78.96
42%
-121
- C3 -
3NEU
1
?
A:
[8-114]
-----
F
H
A
D
K
P
---
I
Y
S
Q
I
S
D
W
M
K
K
Q
M
I
T
G
E
W
K
G
E
D
K
L
P
S
V
R
E
M
G
V
K
L
A
V
N
P
N
T
V
S
R
A
Y
Q
E
L
E
R
A
G
Y
I
Y
A
K
R
G
M
G
-
S
F
V
T
S
D
K
A
L
F
--
D
Q
--
L
-
K
-
K
E
L
A
D
-
A
I
T
E
R
------
F
L
E
E
A
K
S
I
G
L
D
D
Q
T
A
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
62
HHSearch
77.19
39%
-120
- C3 -
3NEU
1
?
A:
[7-122]
----
T
F
H
A
D
K
P
---
I
Y
S
Q
I
S
D
W
M
K
K
Q
M
I
T
G
E
W
K
G
E
D
K
L
P
S
V
R
E
M
G
V
K
L
A
V
N
P
N
T
V
S
R
A
Y
Q
E
L
E
R
A
G
Y
I
Y
A
K
R
G
M
G
-
S
F
V
T
S
D
K
A
L
F
--
D
Q
--
L
---
K
K
E
L
A
D
A
I
T
E
R
------
F
L
E
E
A
K
S
I
G
L
D
D
Q
T
A
I
E
L
L
I
K
R
S
R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
71
Fugue
71.35
30%
-97
- C3 -
3BY6
1
?
A:
[2-120]
-Q
A
M
A
I
T
Q
K
R
P
---
V
Y
L
Q
L
V
D
R
I
K
N
E
V
A
T
D
V
L
S
A
N
D
Q
L
P
S
V
R
E
T
A
L
Q
E
K
I
N
P
N
T
V
A
K
A
Y
K
E
L
E
A
Q
K
V
I
R
T
I
P
G
K
G
-
T
F
I
T
G
N
T
A
S
V
--
K
N
--
S
-
N
-
Q
N
R
L
L
-
A
D
L
S
Q
------
V
I
A
E
L
I
K
S
G
V
K
G
E
R
I
K
K
I
V
N
D
I
L
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
64
HHSearch
71.17
31%
-97
- C3 -
3BY6
1
?
A:
[4-120]
---
M
A
I
T
Q
K
R
P
---
V
Y
L
Q
L
V
D
R
I
K
N
E
V
A
T
D
V
L
S
A
N
D
Q
L
P
S
V
R
E
T
A
L
Q
E
K
I
N
P
N
T
V
A
K
A
Y
K
E
L
E
A
Q
K
V
I
R
T
I
P
G
K
G
-
T
F
I
T
G
N
T
A
S
V
--
K
N
--
S
-
N
-
Q
N
R
L
L
-
A
D
L
S
Q
------
V
I
A
E
L
I
K
S
G
V
K
G
E
R
I
K
K
I
V
N
D
I
L
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
PsiBlast_CBE
71.00
33%
-101
- C3 -
3BY6
1
?
B:
[4-111]
---
M
A
I
T
Q
K
R
P
---
V
Y
L
Q
L
V
D
R
I
K
N
E
V
A
T
D
V
L
S
A
N
D
Q
L
P
S
V
R
E
T
A
L
Q
E
K
I
N
P
N
T
V
A
K
A
Y
K
E
L
E
A
Q
K
V
I
R
T
I
P
G
K
G
-
T
F
I
T
G
N
T
A
S
V
--
K
N
--
S
N
Q
-
N
R
L
L
A
-
D
L
S
Q
-------
V
I
A
E
L
I
K
S
G
V
K
G
E
R
I
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
PsiBlast_CBE
70.23
33%
-100
- C3 -
3BY6
1
?
C:
[4-111]
---
M
A
I
T
Q
K
R
P
---
V
Y
L
Q
L
V
D
R
I
K
N
E
V
A
T
D
V
L
S
A
N
D
Q
L
P
S
V
R
E
T
A
L
Q
E
K
I
N
P
N
T
V
A
K
A
Y
K
E
L
E
A
Q
K
V
I
R
T
I
P
G
K
G
-
T
F
I
T
G
N
T
A
S
V
--
K
N
--
S
N
Q
-
N
R
L
L
A
-
D
L
S
Q
-------
V
I
A
E
L
I
K
S
G
V
K
G
E
R
I
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
70.05
33%
-101
- C3 -
3BY6
1
?
A:
[4-111]
---
M
A
I
T
Q
K
R
P
---
V
Y
L
Q
L
V
D
R
I
K
N
E
V
A
T
D
V
L
S
A
N
D
Q
L
P
S
V
R
E
T
A
L
Q
E
K
I
N
P
N
T
V
A
K
A
Y
K
E
L
E
A
Q
K
V
I
R
T
I
P
G
K
G
-
T
F
I
T
G
N
T
A
S
V
--
K
N
--
S
N
Q
-
N
R
L
L
A
-
D
L
S
Q
-------
V
I
A
E
L
I
K
S
G
V
K
G
E
R
I
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
67.14
30%
-97
- C3 -
2DU9
1
?
A:
[4-115]
----------
P
---
L
Y
K
Q
I
A
S
L
I
E
D
S
I
V
D
G
T
L
S
I
D
Q
R
V
P
S
T
N
E
L
A
A
F
H
R
I
N
P
A
T
A
R
N
G
L
T
L
L
V
E
A
G
I
L
Y
K
K
R
G
I
G
-
M
F
V
S
A
Q
A
P
A
L
I
R
E
R
--
R
-
D
-
A
A
F
A
A
-
T
Y
V
A
P
------
L
I
D
E
S
I
H
L
G
F
T
R
A
R
I
H
A
L
L
D
Q
V
A
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
72
Fugue
66.45
29%
-90
- C3 -
2DU9
1
?
A:
[3-118]
---------
V
P
---
L
Y
K
Q
I
A
S
L
I
E
D
S
I
V
D
G
T
L
S
I
D
Q
R
V
P
S
T
N
E
L
A
A
F
H
R
I
N
P
A
T
A
R
N
G
L
T
L
L
V
E
A
G
I
L
Y
K
K
R
G
I
G
M
F
V
S
A
Q
A
P
A
L
I
--
R
E
--
R
-
R
D
A
A
F
A
A
-
T
Y
V
A
P
------
L
I
D
E
S
I
H
L
G
F
T
R
A
R
I
H
A
L
L
D
Q
V
A
E
S
R
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
73
Fugue
65.93
21%
-105
- C3 -
4MGR
3
GABR_BACSU
A:
[2-469]
D
I
T
I
T
L
D
R
S
E
Q
ADY
I
Y
Q
Q
I
Y
Q
K
L
K
K
E
I
L
S
R
N
L
L
P
H
S
K
V
P
S
K
R
E
L
A
E
N
L
K
V
S
V
N
S
V
N
S
A
Y
Q
Q
L
L
A
E
G
Y
L
Y
A
I
E
R
K
G
-
F
F
V
E
E
L
D
M
------------
F
S
A
E
E
-
H
P
P
F
A
------
L
P
D
D
L
K
E
I
H
I
D
Q
S
D
W
I
S
F
S
H
M
S
S
D
T
D
-
H
F
P
I
K
S
W
F
R
C
E
Q
K
A
A
S
R
S
YRTLGDMSHPQGI
Y
E
V
R
A
A
I
T
R
L
I
S
L
T
RG
V
K
C
R
PEQ
M
I
I
G
AG
T
Q
V
L
M
Q
L
L
T
E
L
L
PKE
A
V
Y
A
M
E
EPGY
R
R
M
Y
Q
L
L
K
N
A
G
K
Q
V
K
T
I
M
L
D
EKGMS
I
A
E
I
T
R
QQPD
V
L
V
T
TPSHQFPSG
T
I
M
P
V
S
R
R
I
Q
L
L
N
W
A
A
EEPR
R
Y
I
I
E
D
D
Y
DSEFTYDVDSIPALQSLDRFQN
V
I
Y
M
G
T
FSKSLLPG
L
R
I
S
Y
M
V
L
P
P
E
L
L
R
A
Y
K
Q
R
GYDLQTCS
S
L
T
Q
L
T
L
Q
E
F
I
E
S
G
E
Y
Q
K
H
I
K
K
M
K
Q
H
Y
K
E
K
R
E
R
L
I
T
A
L
E
A
EFSGE
V
T
V
K
G
A
NAGL
H
F
V
T
E
F
DTRRT
E
Q
D
I
L
S
H
A
A
G
L
Q
L
E
I
F
G
MSRFNLKENKRQTGR
P
A
L
I
I
G
F
ARLKEED
I
Q
E
G
V
Q
R
L
FKAVY
63
HHSearch
63.26
29%
-74
- C3 -
2EK5
-
?
A:
[3-116]
---------
V
P
---
L
Y
K
Q
I
A
S
L
I
E
D
S
I
V
D
G
T
L
S
I
D
Q
R
V
P
S
T
N
E
L
A
A
F
H
R
I
N
P
A
T
A
R
N
G
L
T
L
L
V
E
A
G
I
L
Y
K
K
R
G
I
G
-
M
F
V
S
A
Q
A
P
A
L
--
I
R
E
R
R
-
D
-
A
A
F
A
A
-
T
Y
V
A
P
------
L
I
D
E
S
I
H
L
G
F
T
R
A
R
I
H
A
L
L
D
Q
V
A
E
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
63.00
37%
-95
- C3 -
4HAM
5
?
A:
[14-115]
----------
P
---
I
Y
E
Q
I
V
Q
K
I
K
E
Q
V
V
K
G
V
L
Q
E
G
E
K
I
L
S
I
R
E
F
A
S
R
I
G
V
N
P
N
T
V
S
K
A
Y
Q
E
L
E
R
Q
E
V
I
I
T
V
K
G
K
G
-
T
F
I
A
N
Q
T
D
K
L
--
S
S
---------
P
K
-
K
L
A
E
T
R
T
K
L
K
E
T
I
L
D
L
V
Y
L
G
V
N
I
E
E
I
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
62.91
30%
-79
- C3 -
2EK5
-
?
A:
[4-115]
----------
P
---
L
Y
K
Q
I
A
S
L
I
E
D
S
I
V
D
G
T
L
S
I
D
Q
R
V
P
S
T
N
E
L
A
A
F
H
R
I
N
P
A
T
A
R
N
G
L
T
L
L
V
E
A
G
I
L
Y
K
K
R
G
I
G
-
M
F
V
S
A
Q
A
P
A
L
I
R
E
R
--
R
-
D
-
A
A
F
A
A
-
T
Y
V
A
P
------
L
I
D
E
S
I
H
L
G
F
T
R
A
R
I
H
A
L
L
D
Q
V
A
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
PsiBlast_PDB
60.70
27%
-106
- C3 -
4EGZ
4
ARAR_BACSU
A:
[23-88]
----------
P
---
K
Y
A
Q
V
K
E
E
I
S
S
W
I
N
Q
G
K
I
L
P
D
Q
K
I
P
T
E
N
E
L
M
Q
Q
F
G
V
S
R
H
T
I
R
K
A
I
G
D
L
V
S
Q
G
L
L
Y
S
V
Q
G
G
G
-
T
F
V
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
59.73
28%
-97
- C3 -
4U0V
8
YVOA_BACSU
A:
[13-101]
----------
P
---
I
Y
Y
Q
I
M
E
Q
L
K
T
Q
I
K
N
G
E
L
Q
P
D
M
P
L
P
S
E
R
E
Y
A
E
Q
F
G
I
S
R
M
T
V
R
Q
A
L
S
N
L
V
N
E
G
L
L
Y
R
L
K
G
R
G
-
T
F
V
S
--
K
P
K
M
--
E
Q
---------
A
L
-
Q
G
L
T
S
------
F
T
E
D
M
K
S
R
G
M
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
59.32
30%
-134
- C3 -
4N0B
-
GABR_BACSU
A:
[16-85]
--------------
I
Y
Q
Q
I
Y
Q
K
L
K
K
E
I
L
S
R
N
L
L
P
H
S
K
V
P
S
K
R
E
L
A
E
N
L
K
V
S
V
N
S
V
N
S
A
Y
Q
Q
L
L
A
E
G
Y
L
Y
A
I
E
R
K
G
-
F
F
V
E
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
59.25
28%
-125
- C3 -
4U0Y
3
YVOA_BACSU
A:
[13-78]
----------
P
---
I
Y
Y
Q
I
M
E
Q
L
K
T
Q
I
K
N
G
E
L
Q
P
D
M
P
L
P
S
E
R
E
Y
A
E
Q
F
G
I
S
R
M
T
V
R
Q
A
L
S
N
L
V
N
E
G
L
L
Y
R
L
K
G
R
G
-
T
F
V
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
76
Fugue
59.20
19%
-63
- C3 -
2DI3
1
?
A:
[2-232]
--------
S
V
K
---
A
H
E
S
V
M
D
W
V
T
E
E
L
R
S
G
R
L
K
I
G
D
H
L
P
S
E
R
A
L
S
E
T
L
G
V
S
R
S
S
L
R
E
A
L
R
V
L
E
A
L
G
T
I
S
T
A
T
G
S
G
-
P
R
S
G
T
--------
I
--
I
-
T
-
A
A
P
G
Q
-
A
L
S
L
S
------
V
T
L
Q
L
V
T
N
Q
V
G
H
H
D
I
Y
E
T
R
Q
L
L
E
G
W
A
A
L
H
S
S
A
ERGD
W
D
V
A
E
A
L
L
E
K
M
D
DPSLP
L
E
D
F
L
R
F
D
A
E
F
H
V
V
I
S
K
G
AEN
P
L
I
S
T
L
M
E
A
L
R
L
S
V
A
D
H
T
V
A
R
A
R
ALPD
W
R
A
T
S
A
R
L
Q
K
E
H
R
A
I
L
A
A
L
R
A
GE
S
T
V
A
A
T
L
I
K
E
H
I
E
G
Y
Y
E
E
T
A
A
A
EAL-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------