@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo1468: (2016-03-25 )
LTLLDKLNEDMKQAMRDKEKEKLSVIRMLKAALQNEAIHQGVKDLTPDDEVTVISRELKQRRDSLAEFDKAGRSDLSDKVRSEIVIVEDYAPKQLTPEELENIVKATIEEVGASSKADFGKVMSAIMPKVKGKADGGAVNQFVKKYLS
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------..-..-.....10........20........30.........40........50...------....------.60........70........80........90.....-..-.100...----..---------..110.-------.------.------.....120....-...----130.......140......----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------L
T
-
L
L
-
D
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-
A
A
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N
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A
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H
Q
G
V
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DLTPDD
E
V
T
V
I
------
S
R
E
L
------
K
Q
R
R
D
S
L
A
E
F
D
K
AGRS
D
L
S
D
K
V
RS
E
I
V
I
V
EDYAPKQL
T
-
P
E
-
E
L
E
N
I
V
K
----
A
T
---------
I
E
E
V-G-------A------S------SK
A
D
F
G
K
V
M
S
A
I
-
M
P
K
----VKGKADG
G
A
V
N
Q
F
V
K
K
YLS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
97.99
61%
-69
- C5 -
1NG6
-
YQEY_BACSU
A:
[1-148]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
-
L
L
-
E
R
L
N
Q
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M
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M
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-
A
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------
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------
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-
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E
-
E
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N
----
E
T
---------
I
A
E
V
-
G
-------
A
------
S
------
S
K
A
D
M
G
K
V
M
G
A
I
-
M
P
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----
V
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G
K
A
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G
S
L
I
N
K
L
V
S
S
Q
L
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
97.99
61%
-69
- C5 -
1NG6
-
YQEY_BACSU
A:
[1-148]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
-
L
L
-
E
R
L
N
Q
D
M
K
L
Y
M
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V
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R
M
V
K
-
A
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N
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E
D
E
E
L
T
V
L
------
S
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E
L
------
K
Q
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S
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N
A
N
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-
E
E
-
E
L
R
T
I
V
N
----
E
T
---------
I
A
E
V
-
G
-------
A
------
S
------
S
K
A
D
M
G
K
V
M
G
A
I
-
M
P
K
----
V
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G
K
A
D
G
S
L
I
N
K
L
V
S
S
Q
L
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
97.63
61%
-69
- C5 -
1NG6
-
YQEY_BACSU
A:
[1-148]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
-
L
L
-
E
R
L
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M
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-
A
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L
------
S
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------
K
Q
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A
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-
E
E
-
E
L
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I
V
N
----
E
T
---------
I
A
E
V
-
G
-------
A
------
S
------
S
K
A
D
M
G
K
V
M
G
A
I
-
M
P
K
----
V
K
G
K
A
D
G
S
L
I
N
K
L
V
S
S
Q
L
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
53.28
16%
-3
- C5 -
1IRX
2
SYK_PYRHO
A:
[3-523]
H
W
A
D
Y
I
A
D
K
I
I
R
ERGEKE
K
Y
V
V
E
S
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PSGYVH
V
G
N
F
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E
L
F
T
A
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A
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R
D
K
G
Y
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M
W
DDYDRFRKVPRNVPQEWKDYLGMPISEVPDPWGCHES
Y
A
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H
F
M
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K
F
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V
E
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I
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S
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Y
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A
KQPPLPENWWP
A
M
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Y
CPEHR
R
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A
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I
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WDGG
W
K
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K
Y
K
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IRSGNVKLR
W
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F
GVD
F
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P
A
G
KDHLVAGS
S
Y
D
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K
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GQNVIL
L
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P
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L
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A
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K
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I
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GVEGE
E
L
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Y
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L
S
MPKKPERLVAQAP
F
R
F
L
A
V
L
V
Q
LPHLT
E
E
D
I
I
N
V
L
I
-
K
Q
-
G
H
I
P
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L
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K
Y
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P
P
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E
V
S
------------------
E
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R
E
A
M
N
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V
A
E
W
L
E
N
H
-----------------
E
E
F
S
-
V
E
-
E
F
N
N
I
L
F
----
E
V
---------
A
K
R
R
-
G
-------
I
------
S
------
S
R
E
W
F
S
T
L
Y
R
L
F
-
I
G
K
----
E
R
G
P
R
L
A
S
F
L
A
S
L
D
R
S
F
V
I
K
R
L
R
LEG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
53.20
22%
-14
* C4 *
4XDN
5
SCC4_YEAST
A:
[24-640]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------G
D
K
L
S
I
S
Q
V
Y
H
L
A
Q
E
Y
R
D
H
A
Y
S
I
A
NKIGS
E
E
G
L
K
Q
Y
Y
G
L
M
N
M
S
I
Q
M
F
Q
L
L
K
T
KCTLS
V
L
E
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V
T
F
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M
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E
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I
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ETYN
F
D
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A
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Y
I
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H
QSDTDL
V
E
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C
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F
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H
D
L
P
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DS
K
F
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I
A
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N
LQD
E
L
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Q
N
W
A
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Y
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M
L
C
I
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H
R
R
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Q
CREKS
Q
W
K
W
F
L
N
L
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Y
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N
Y
L
L
N
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F
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K
G
---
C
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P
M
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F
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Y
K
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E
L
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N
I
L
L
----
L
L
Q
S
V
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Y
I
VNC
Y
D
E
K
-
G
-------
N
------
F
------
S
R
K
F
L
P
K
V
Y
S
T
T
-
Q
K
L
----
I
K
N
I
A
A
G
G
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M
N
E
L
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R
I
Q
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Y
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S
I
L
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F
C
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F
Y
K
V
W
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Q
T
L
L
K
GAVVLGPSPG
Y
V
R
L
L
Q
A
M
K
V
Q
F
E
GGGA
V
E
E
Y
T
R
L
A
Q
SGGTS
S
E
V
K
M
I
S
L
L
N
C
Y
T
V
Q
A
A
R
V
S
R
CSGDK
Q
G
E
L
V
E
Q
C
N
K
V
W
L
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V
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K
L
L
Q
E
T
DLQFN
P
I
W
E
C
T
V
T
I
L
W
L
F
S
H
F
EPFSWNPLPCS
D
K
Q
R
A
E
Y
V
S
K
L
R
E
F
Y
S
S
N
KFVNRFKLKKA
L
L
L
Q
I
L
V
N
Y
L
G
G
R
M
LEHD
L
G
E
I
Y
A
I
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A
K
C
F
D
M
C
R
QQGGM
R
K
V
Q
Y
V
I
G
I
W
H
L
M
N
C
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A
MR
G
K
D
V
A
L
T
N
A
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L
E
A
L
V
K
Q
I
T
S
8
HHSearch
52.80
23%
-47
- C5 -
3AL0
-
GATB_THEMA
B:
[351-480]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
M
T
E
V
L
-
R
E
L
N
E
R
N
I
E
I
T
E
S
K
L
T
P
Q
H
F
A
D
L
F
------
K
L
M
D
E
GKIS
I
K
I
A
K
E
I
F
P
E
V
F
E
T
G
K
--------
M
P
S
Q
I
V
E
E
K
G
L
T
Q
I
N
D
E
K
-
L
I
E
E
L
V
K
----
K
A
---------
M
E
Q
N
-
P
-------
K
A
V
Q
D
Y
K
S
G-----
K
K
K
A
A
G
F
F
V
G
Y
V
-
M
R
E
----
T
K
G
K
A
N
P
E
L
T
N
R
I
I
Q
K
L
L
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
48.89
20%
-11
- C3 -
4RGP
6
?
A:
[2-256]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NAT
E
Q
E
T
L
T
I
L
L
D
V
YA
Y
Y
Q
A
Y
Q
I
V
K
A
SQFFS
D
D
I
I
F
L
L
E
L
L
K
E
R
R
E
LNV
D
F
L
F
Q
N
Q
V
H
L
Q
E
L
E
L
T
Y
HISLLDNA
Y
E
E
E
L
L
A
N
Y
I
M
D
L
E
A
K
L
R
N
DH
I
I
D
F
V
R
S
V
S
P
I
L
Y
R
L
L
M
R
L
M
Q
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Q
V
A
D
I
N
D
Y
I
Y
D
A
K
N
D
Q
Y
D
T
W
K
F
D
K
M
H
D
S
A
N
P
F
V
Q
N
F
V
A
K
-
G
R
D
S
K
I
T
---------------------
S
R
S
L
A
D
F
I
Q
--
L
T
D
L
P
Q
A
I
K
D
N
I
L
L
L
R
D
F
E
K
S
--
V
-
R
N
-
P
L
A
H
L
I
K
PFD
E
E
E
---------
L
H
R
T
T
G
-------
F
------
S
------
S
Q
T
F
L
E
K
I
I
Q
L
A
-
V
F
S
G
I
H
Y
D
N
D
K
F
Y
F
D
K
V
N
E
L
I
K
R
I
Y
Q
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
48.17
23%
-34
- C5 -
3IP4
-
GATB_STAAM
B:
[363-473]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
L
T
P
E
N
L
A
G
M
I
------
K
L
I
E
D
G----
T
M
S
S
K
I
A
K
K
V
F
P
E
----
L
A
A
K
G
G
N
A
K
Q
I
M
E
D
N
G
L
V
Q
I
S
D
E
A
-
T
L
L
K
F
V
N
----
E
A
---------
L
D
N
N
-
E
Q
S
V
E
D
Y
K
N
------
G
------
K
G
K
A
M
G
F
L
V
G
Q
I
-
M
K
A
----
S
K
G
Q
A
N
P
Q
L
V
N
Q
L
L
K
Q
E
L
D
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
42.94
19%
5
- C5 -
1NYH
-
SIR4_YEAST
A:
[1271-1346]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
S
-
F
V
-
D
I
V
L
S
K
A
A
S
A
L
D
E
K
E
K
Q
-
L
A
V
A
N
E
I
I
-
R
S
L
S
D
E
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M
R
N
E
I
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I
T
S
L
Q
G
D
L
T
F
T
------
K
K
C
L
------
E
N
A
R
S
Q
I
S
E
K
D
A
K
I
N
K
L
M
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
40.11
15%
-22
- C5 -
3OL3
10
?
A:
[38-94]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
L
L
K
R
S
L
T
-
E
D
-
E
V
V
R
A
A
Q
----
A
I
---------
L
R
S
T
-
D
-------
G
QSP---
V
------
T
D
D
D
I
R
N
A
V
H
Q
I
-
I
E
K
----
E
P
T
A
E
E
I
N
Q
V
A
A
R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
38.53
15%
8
* C5 *
3T98
-
NUP54_RAT
A:
[456-494]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
Y
-
I
D
-
A
D
L
L
R
E
I
K
Q
H
L
K
Q
Q
Q
E
G
L
S
H
L
I
S
I
I
K
-
D
D
L
E
D
I
K
L
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
37.52
28%
36
- C5 -
5CWW
-
?
C:
[1-32]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
R
A
R
E
A
K
R
K
A
T
L
R
M
L
R
-
E
S
L
A
R
V
--
G
P
N
V
V
R
L
R
D
D
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
36.60
16%
-29
- C5 -
2M0N
-
?
A:
[35-95]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
L
L
R
R
T
L
T
-
E
E
-
Q
V
Q
E
V
V
A
----
K
L
---------
T
D
P
E
-
S
-------
S
------
A
Q
IDGVV
S
K
D
E
I
E
K
F
I
A
D
V
-
T
K
D
----
E
P
T
A
Q
D
I
S
R
V
A
S
R
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
35.98
15%
-24
- C5 -
2LKY
-
?
A:
[35-87]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
L
L
T
R
R
L
T
-
N
D
-
E
I
K
A
I
A
E
----
D
L
---------
E
K
R
A
-
H
--------------
F
------
D
H
I
D
I
G
V
L
I
T
Q
M
-
T
D
E
----
M
P
R
E
E
D
I
E
R
V
R
R
H
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
34.56
31%
-35
- C5 -
3E7J
1
HEPB_PEDHD
A:
[136-184]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
V
Y
D
W
C
Y
D
Q
L
K
-
P
E
-
E
K
T
R
F
V
K
----
A
F
---------
V
R
-----------------------------
L
A
K
M
L
E
C
G
-
Y
P
P
----
V
K
D
K
S
I
V
G
A
A
S
E
W
M
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
32.96
27%
-27
- C5 -
2QYG
-
RBLL2_RHOPA
A:
[317-380]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
V
V
I
M
P
G
F
G
P
R
M
M
T
-
P
E
H
E
V
L
D
C
I
R
----
A
C
---------
L
E
P
M
-
G
PI
K
P
C
L
P
V
------
P
------
G
G
S
D
S
A
A
T
L
E
N
V
-
Y
R
K
----
V
-
G
S
A
D
F
G
F
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
32.34
17%
42
- C5 -
1BXN
-
RBSC_CUPNE
I:
[9-31]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
F
L
P
E
-
L
T
-
D
E
-
Q
I
T
K
Q
L
E
----
Y
C
---------
L
N
Q
G
-
W
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
31.86
18%
26
- C4 -
4DVK
9
POLG_BVDVC
A:
[1-157]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------E
N
I
T
Q
W
N
-
L
Q
-
D
N
G
T
E
G
I
Q
R
A
M
F
Q
R
G
V
N
-----
R
S
L
H
-
G
I
W
P
E
K
I
C
T
G
V
P
S
H
L
A
T
D
T
E
L
K
A
I
HGMMDA
S
E
K
T
NY----
T
C
C
R
L
Q
R
H
E
W
N
K
H
G
W
C
N
W
Y
N
I
E
P
W
I
L
L
M
N
K
T
Q
A
N
L
T
E
G
-
Q
P
-
L
R
E
C
A
V
T
----
C
R
---------
Y
D
-------------------------
R
D
S
D
L
N
V
V
T
Q
A
R
D
S
P
T
----
P
L
T
G
C
K
K
G
K
N
F
S
F
A
G
I
L
V
Q
GPCNF-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
31.23
23%
46
- C5 -
1RBL
-
RBS_SYNP6
M:
[15-36]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
Y
L
P
P
-
L
S
-
D
R
-
Q
I
A
A
Q
I
E
----
Y
M
---------
I
E
Q
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
31.19
36%
-36
- C5 -
1LNS
-
PEPX_LACLC
A:
[453-485]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
D
K
V
K
A
D
V
L
I
V
H
G
L
Q
D
W
N
V
T
-
P
E
-
Q
A
Y
N
F
W
K
----
A
L
---------
P
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------