@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo1785: (2016-03-28 )
ISKDMLVNDGIRAREVRLIDQDGEQLGVKSKIDALQIAEKANLDLVLVAPTAKPPVARIMDYGKFRFEQQKKDKEARKNQKVIVMKEVRLSPTIDEHDFDTKLRNARKFLEKGDKVKCSIRFKGRAITHKEIGQKVLDRFAKACEDLCTIEQRPKMDGRSMFLVLAPLHEK
Atome Classification :
(20 SA)
--------------------------------------.........10..-......20-........30-.........40..-------......50-.........60--------------.........70..---..----....80........90.....-...100-........110.....-...120.......--130.......140-.........150..-.-....160.......170-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------ISKDMLVNDGIR
A
-
R
E
V
R
L
IDQ-DGEQLGVKS--KI
D
A
L
Q
I
A
E
KANL-------
D
L
V
L
VAP--TAKP
P
V
A
R
I
M
---------------
D
Y
G
K
F
R
F
E
Q
Q
K
K
D
---
K
E
----ARKN
Q
K
V
I
V
M
K
EVRLSPTIDE-H
D
F
D
T
--
K
L
R
N
A
R
K
F
L
E-KG
D
K
V
-
K
C
S
I
R
FKGRAI
T
H
--
K
E
I
G
Q
K
V
L
D
R
F
---
A
K
A
C
E
D
L
C
T
I
E
QRP-K-MDG
R
S
M
F
L
V
LAPLHEK------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
98.92
76%
-104
- C3 -
1TIG
-
IF3_GEOSE
A:
[83-170]
-----------------------------------------------------------------------------------------------------------------------------------------------------------
I
N
V
K
E
V
R
L
S
P
T
I
E
E
-
H
D
F
N
T
--
K
L
R
N
A
R
K
F
L
E
-
K
G
D
K
V
-
K
A
T
I
R
F
K
G
R
A
I
T
H
--
K
E
I
G
Q
R
V
L
D
R
L
---
S
E
A
C
A
D
I
A
V
V
E
T
A
P
-
K
-
M
D
G
R
N
M
F
L
V
L
A
P
K
N
D
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
97.63
79%
-106
- C3 -
1TIG
-
IF3_GEOSE
A:
[83-167]
-----------------------------------------------------------------------------------------------------------------------------------------------------------
I
N
V
K
E
V
R
L
S
P
T
I
E
E
-
H
D
F
N
T
--
K
L
R
N
A
R
K
F
L
E
-
K
G
D
K
V
-
K
A
T
I
R
F
K
G
R
A
I
T
H
--
K
E
I
G
Q
R
V
L
D
R
L
---
S
E
A
C
A
D
I
A
V
V
E
T
A
P
-
K
-
M
D
G
R
N
M
F
L
V
L
A
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
79.77
44%
-95
- C3 -
2IFE
-
IF3_ECOLI
A:
[90-179]
----------------------------------------------------------------------------------------------------------------------------------------------------------
V
I
Q
V
K
E
I
K
F
R
P
G
T
D
E
-
G
D
Y
Q
V
--
K
L
R
S
L
I
R
F
L
E
-
E
G
D
K
A
-
K
I
T
L
R
F
R
G
R
E
M
A
H
--
Q
Q
I
G
M
E
V
L
N
R
V
---
K
D
D
L
Q
E
L
A
V
V
E
S
F
P
-
T
K
I
E
G
R
Q
M
I
M
V
L
A
P
K
K
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
79.09
43%
-104
- C3 -
2IFE
-
IF3_ECOLI
A:
[95-176]
---------------------------------------------------------------------------------------------------------------------------------------------------------------
E
I
K
F
R
P
G
T
D
E
-
G
D
Y
Q
V
--
K
L
R
S
L
I
R
F
L
E
-
E
G
D
K
A
-
K
I
T
L
R
F
R
G
R
E
M
A
H
--
Q
Q
I
G
M
E
V
L
N
R
V
---
K
D
D
L
Q
E
L
A
V
V
E
S
F
P
T
K
-
I
E
G
R
Q
M
I
M
V
L
A
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
68.40
23%
-64
- C3 -
2CRQ
-
A:
[7-102]
-----------------------------------------------------------------------------------------------------------------------------------------------------
G
P
K
T
G
P
T
M
T
K
E
L
V
F
S
S
N
I
G
Q
-
H
D
L
D
T
--
K
S
K
Q
I
Q
Q
W
I
E
-
K
K
Y
H
V
-
Q
V
T
I
K
R
R
K
D
A
E
Q
S
--
E
E
E
T
E
E
I
F
N
Q
I
---
L
Q
T
M
P
D
I
A
T
F
S
S
R
P
-
K
A
I
R
G
G
T
A
S
M
C
V
F
R
H
L
S
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
65.96
27%
-49
- C3 -
2CRQ
-
A:
[14-85]
------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
K
E
L
V
F
S
S
N
I
G
Q
-
H
D
L
D
T
--
K
S
K
Q
I
Q
Q
W
I
E
-
K
K
Y
H
V
-
Q
V
T
I
K
R
R
K
D
A
E
Q
S
--
E
E
E
T
E
E
I
F
N
Q
I
---
L
Q
T
M
P
D
I
A
T
F
S
S
R
P
-
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
53.90
23%
31
- C1 -
1SQ9
2
SKI8_YEAST
A:
[3-395]
K
V
F
I
A
T
A
NAGKAHDADIF
S
V
S
A
C
NS
F
T
V
S
C
S
GDG
Y
L
K
V
W
D
N
K
L
L
D
N
E
N
P
K
D
K
S
Y
S
H
F
V
H
K
-
S
G
-----
L
H
--
H
V
D
V
L
Q
A
I
E
R
D
A
F
-------
E
L
C
L
V
A
T
--
T
S
F
S
-----------------------
G
D
L
L
F
Y
R
I
T
R
E
---
D
E
-------
T
K
K
V
I
F
E
K
L
D
L
L
D
S
D
M
K
K
-
H
S
F
W
A
--
L
K
W
G
A
S
N
----------------
S
H
R
L
V
A
T
--
D
V
K
G
T
T
Y
I
W
K
F
H
PF
A
D
E
S
N
S
L
-
T
L
N
W
S
P
-
T
-
L
E
L
Q
G
--
T
V
E
S
P
M
T
P
S
QFAT
S
V
D
I
S
ER
G
L
I
A
T
G
F
NNG
T
V
Q
I
S
E
LSTLRPL
Y
N
F
E
SQHNNSNSIR
S
V
K
F
SPQGS
L
L
A
I
A
H
D
S
NS
F
G
C
I
T
L
Y
E
TEFGERI
G
S
L
S
V
PGEFAHSSWVM
S
L
S
F
N
DSGE
T
L
C
S
A
G
WDG
K
L
R
F
W
DVKTKERI
T
T
L
N
M
H
CDDIEIEEDILAVDEHGDSLA
E
P
G
V
F
D
V
K
F
L
K
KGWRSGMGADL
N
E
S
L
C
C
V
C
LDR
S
I
R
W
F
R
E
A
G
10
HHSearch
51.25
40%
182
- C- -
1I96
-
IF3_THET8
V:
[1-86]
------------------------------------------------------------------------------------------------------------------------------------------------------------
E
V
K
S
I
K
F
R
V
K
I
D
E
-
H
D
Y
Q
T
--
K
L
G
H
I
K
R
F
L
Q
-
E
G
H
K
V
-
K
V
T
I
M
F
R
G
R
E
V
A
H
--
P
E
L
G
E
R
I
L
N
R
V
---
T
E
D
L
K
D
L
A
V
V
E
M
K
P
-
E
-
M
L
G
R
D
M
N
M
L
L
A
P
V
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
49.43
41%
200
- C- -
1I96
-
IF3_THET8
V:
[2-85]
-------------------------------------------------------------------------------------------------------------------------------------------------------------
V
K
S
I
K
F
R
V
K
I
D
E
-
H
D
Y
Q
T
--
K
L
G
H
I
K
R
F
L
Q
-
E
G
H
K
V
-
K
V
T
I
M
F
R
G
R
E
V
A
H
--
P
E
L
G
E
R
I
L
N
R
V
---
T
E
D
L
K
D
L
A
V
V
E
M
K
P
-
E
-
M
L
G
R
D
M
N
M
L
L
A
P
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
46.43
15%
-30
- C3 -
2JVF
-
?
A:
[14-87]
---------------------------------------------------------------------------------------------------------------------------------------------------------------
E
I
E
I
D
I
R
V
S
T
G
K
E
L
E
R
--
A
L
Q
E
L
E
K
A
L
A
R
A
G
A
R
N
V
Q
I
T
I
S
A
E
-----
N
--
D
E
Q
A
K
E
L
L
E
L
I
---
A
R
L
L
Q
K
L
G
Y
K
D
I
N
V
-
R
-
V
N
G
T
E
V
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
42.32
11%
11
- C2 -
2IF7
1
SLAF6_HUMAN
A:
[3-193]
-----------------------------------L
T
P
L
M
V
N
G
I
L
G
E
S
V
T
L
-
P
L
E
F
P
A
G
E
-
K
V
N
F
I
T
W
L
F
--
N
E
T
S
L
A
F
I
V
P
H
E
T
-------
K
S
P
E
I
H
V
--
T
N
P
K
Q
G
K
R
L
N
F
T
QSYS
L
Q
L
S
NLKME
D
T
G
S
Y
R
A
Q
I
S
T
K
T
---
S
A
----
K
L
S
S
Y
T
L
R
I
L
R
Q
L
R
-
N
I
Q
V
T
N
-
H
S
Q
N
M
T
C
E
L
H
L
T
C
S
V
E
D
-
A
D
D
N
V
-
S
F
R
W
E
A
L
G
N
T
L
S
S
Q-
P
N
L
T
V
S
W
D
P
R
I
---
S
S
E
Q
D
Y
T
C
I
A
E
N
A
V
----
S
N
L
S
F
S
V
S
A
Q
K
L
C
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
39.81
28%
12
- C3 -
1IVS
-
SYV_THETH
A:
[741-821]
--------------------------------------------------
A
-
Q
E
V
R
-
V
Y
L
-
E
G
E
T
A
P
V
E
E
--
N
L
E
V
F
R
F
L
S
R
A
D
L
L
PERPA
K
A
L
V
K
A
M
P
R
V
T
A
R
M
P
L
E
G
L
L
---------------
D
V
E
E
W
R
R
R
Q
E
K
R
L
---
K
E
L
L
A
L
A
E
R
S
Q
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
39.66
28%
6
- C3 -
1GAX
-
SYV_THETH
A:
[741-821]
--------------------------------------------------
A
-
Q
E
V
R
-
V
Y
L
-
E
G
E
T
A
P
V
E
E
--
N
L
E
V
F
R
F
L
S
R
A
D
L
L
PERPA
K
A
L
V
K
A
M
P
R
V
T
A
R
M
P
L
E
G
L
L
---------------
D
V
E
E
W
R
R
R
Q
E
K
R
L
---
K
E
L
L
A
L
A
E
R
S
Q
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
35.20
17%
17
- C4 -
2Q97
1
?
T:
[1-109]
------------------------------------------
M
Q
Q
E
L
G
L
L
R
-
P
E
E
R
L
I
A
G
-
Q
A
K
A
A
A
L
Q
T
VH
Q
L
G
A
V
A
L
T
P
E
Q
A
K
-------
A
A
L
L
D
E
I
--
L
R
A
T
Q
N
L
D
L
R
---------------
K
Y
E
N
L
N
T
E
Q
Q
K
A
Y
---
E
Q
----
V
Q
R
D
L
S
Q
L
-
S
P
E
T
K
A
L
L
I
E
N
Q
-
R
K
E
K
T
--
L
L
E
K
A
R
K
L
F
Q
-
R
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
32.87
28%
195
- C- -
1IYW
-
SYV_THETH
A:
[741-821]
--------------------------------------------------
A
-
Q
E
V
R
-
V
Y
L
-
E
G
E
T
A
P
V
E
E
--
N
L
E
V
F
R
F
L
S
R
A
D
L
L
PERPA
K
A
L
V
K
A
M
P
R
V
T
A
R
M
P
L
E
G
L
L
---------------
D
V
E
E
W
R
R
R
Q
E
K
R
L
---
K
E
L
L
A
L
A
E
R
S
Q
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
30.14
15%
34
* C4 *
1JSD
2
?
B:
[1-160]
---------------------------------------
G
L
F
G
A
I
A
G
F
I
E
G
-
G
W
P
G
L
V
A
----
G
W
Y
G
F
Q
H
--
S
N
D
Q
G
V
G
M
A
A
D
S
D
-------
S
T
Q
K
A
I
D
--
K
I
T
S
K
V
N
N
I
V
---------------
D
K
M
N
K
Q
Y
G
I
I
D
H
E
F
S
E
I
E
----
T
R
L
N
M
I
N
N
K
I
D
D
Q
I
Q
D
I
W
T
Y
N
-
A
E
L
L
V
--
L
L
E
N
Q
K
T
L
D
E
-
H
D
A
N
V
-
N
N
L
Y
N
K
V
K
R
A
L
G
S
NA
M
E
D
G
K
G
C
F
E
L
Y
---
H
K
-
C
D
D
Q
C
M
E
T
I
R
N
-
G
-
T
Y
N
R
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
26.13
13%
34
- C3 -
2HC5
-
YVYC_BACSU
A:
[60-99]
------------------------------------------
F
E
L
H
D
K
L
N
E
-
Y
Y
V
K
V
I
E
D
S
T
N
E
V
I
R
E
I
P
--
P
K
R
W
L
D
F
Y
A
A
M
T
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
24.84
41%
170
* C3 *
3TWE
1
?
A:
[11-26]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
D
L
Q
E
--
R
L
R
K
L
R
K
K
L
R
-
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
23.61
14%
82
- C3 -
3SL7
2
CBSX2_ARATH
A:
[132-161]
------------------------------------------------------
L
P
V
V
D
A
-
D
G
K
L
I
G
I
L
T
--
R
G
N
V
V
R
A
A
L
Q
I
K
R
-------
N
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
22.42
19%
293
- C3 -
3KPB
-
Y100_METJA
A:
[100-115]
----------------------------------------------------------
D
D
-
Y
R
R
V
V
G
I
V
T
--
S
E
D
I
S
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