Atome 2 Filter

@TOME V2.3
(Nov 2016)

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3D Common Core:

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Complexes Modeling

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Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]

Sequence color : MutatedHelixStrandConserved

Query sequence : gbs0113: (2015-11-28 )
MKFGKKLGFLALLMSIVLILGACGKTGLGNSTGNSTKNVTKKSAKNLKLGVSISTTNNPYFVAMKDGIDKYASNKKISIKVADAQDDAARQADDVQNFISQNVDAILINPVDSKAIVTAIKSANNANIPVILMDRGSEGGKVLTTVASDNVAAGKMAADYAVKKLGKKAKAFELSGVPGASATVDRGKGFHSVAKSKLDILSSQSANFDRAKALNTTQNMIQGHKDVQIIFAQNDEMALGAAQAVKSAGLQNVLIVGIDGQPDAHDAIKKGDISATIAQQPAKMGEIAIQAAIDHYKGKKVEKETISPIYLVTKDNVEKYNW

Atome Classification :

	(21 SA)									.........10........20........30........40........50........60........70.---.......80.-..--.....90........100.......110.......120.......130....---...-------140.......150.......160...-.----..---.170---.--......180.......190...--.--.--.-..200...-......210.......220.---.---.....230.......240.......250-.---........260.......270.---.......280.......290.....--..300-------------.-----.....--.-..310-........320.
		(Atome)	(Ident)	(Tito)	(Num)		(Ligand)	(Uniprot)		MKFGKKLGFLALLMSIVLILGACGKTGLGNSTGNSTKNVTKKSAKNLKLGVSISTTNNPYFVAMKDGIDKYA---SNKKISIKVA-DA--QDDAARQADDVQNFISQNVDAILINPVDSKAIVTAIKSANNANIPVILMDRG---SEG-------GKVLTTVASDNVAAGKMAADYAVKKL-G----KK---AKAF---E--LSGVPGASATVDRGKGF-HSVA--K--S--K-LDI--LSS-QSANFDRAKALNTTQNMIQG---H---KDVQIIFAQNDEMALGAAQAVKSAGL---Q---NVLIVGIDGQPDAHDAIKKG-D---ISATIAQQPAKMGEIAIQAAIDHYK--GKK---------------V-----EKETI--S-PIYL--VTKDNVEKY-NW
21	PsiBlast_CBE	89.17	47%	-68	- C2 -	2IOY		?	B:[4-275]	------------------------------------------------IGLVISTLNNPFFVTLKNGAEEKA---KELGYKIIVE-DS--QNDSSKELSNVEDLIQQKVDVLLINPVDSDAVVTAIKEANSKNIPVITIDRS---ANG-------GDVVCHIASDNVKGGEMAAEFIAKAL-K----GK---GNVV---E--LEGIPGASAARDRGKGFDEAIA--KY-P--D-IKI--VAK-QAADFDRSKGLSVMENILQA---Q---PKIDAVFAQNDEMALGAIKAIEAANR---Q---GIIVVGFDGTEDALKAIKEG-K---MAATIAQQPALMGSLGVEMADKYLK--GEK---------------I-----PNFIP--A-ELKL--ITKENVQ-----
1	PsiBlast_PDB	88.70	47%	-68	- C2 -	2IOY		?	A:[4-275]	------------------------------------------------IGLVISTLNNPFFVTLKNGAEEKA---KELGYKIIVE-DS--QNDSSKELSNVEDLIQQKVDVLLINPVDSDAVVTAIKEANSKNIPVITIDRS---ANG-------GDVVCHIASDNVKGGEMAAEFIAKAL-K----GK---GNVV---E--LEGIPGASAARDRGKGFDEAIA--KY-P--D-IKI--VAK-QAADFDRSKGLSVMENILQA---Q---PKIDAVFAQNDEMALGAIKAIEAANR---Q---GIIVVGFDGTEDALKAIKEG-K---MAATIAQQPALMGSLGVEMADKYLK--GEK---------------I-----PNFIP--A-ELKL--ITKENVQ-----
35	HHSearch	88.19	46%	-66	- C2 -	2IOY		?	A:[2-275]	----------------------------------------------KTIGLVISTLNNPFFVTLKNGAEEKA---KELGYKIIVE-DS--QNDSSKELSNVEDLIQQKVDVLLINPVDSDAVVTAIKEANSKNIPVITIDRS---ANG-------GDVVCHIASDNVKGGEMAAEFIAKAL-K----GK---GNVV---E--LEGIPGASAARDRGKGF-DEAI--AKYP--D-IKI--VAK-QAADFDRSKGLSVMENILQA---Q---PKIDAVFAQNDEMALGAIKAIEAANR---Q---GIIVVGFDGTEDALKAIKEG-K---MAATIAQQPALMGSLGVEMADKYLK--GEK---------------I-----PNFIP--A-ELKL--ITKENVQ-----
3	PsiBlast_PDB	86.20	45%	-69	- C2 -	1URP	-	RBSB_ECOLI	A:[4-270]	------------------------------------------------IALVVSTLNNPFFVSLKDGAQKEA---DKLGYNLVVL-DS--QNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQ---ATK-------GEVVSHIASDNVLGGKIAGDYIAKKA-G----EG---AKVI---E--LQGIAGTSAARERGEGFQQAVA--A--H--K-FNV--LAS-QPADFDRIKGLNVMQNLLTA---H---PDVQAVFAQNDEMALGALRALQTAGK---S---DVMVVGFDGTPDGEKAVNDG-K---LAATIAQLPDQIGAKGVETADKVLK--GEK---------------V-----QAKYP--V-DLKL--VVKQ--------
2	PsiBlast_PDB	86.07	46%	-63	- C2 -	2GX6		RBSB_ECOLI	A:[5-271]	------------------------------------------------IALVVSTLNNPFFVSLKDGAQKEA---DKLGYNLVVL-DS--QNNPAKELANVQDLTVRGVKILLINPVDSDAVGNAVKMANQANIPVITLDRQ---ATK-------GEVVSHIASDNVLGGKIAGDYIAKKA-G----EG---AKVI---E--LQGIAGTSAARERGEGFQQAVA--A--H--K-FNV--LAS-QPADFDRIKGLNVMQNLLTA---H---PDVQAVFAQNDEMALGALRALQTAGK---S---DVMVVGFDGTPDGEKAVNDG-K---LAATIAQLPDQIGAKGVEVADKVLK--GEK---------------V-----QAKYP--V-DLKL--VVKQ--------
34	HHSearch	85.79	44%	-59	- C2 -	2DRI		RBSB_ECOLI	A:[2-271]	----------------------------------------------DTIALVVSTLNNPFFVSLKDGAQKEA---DKLGYNLVVL-DS--QNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQ---ATK-------GEVVSHIASDNVLGGKIAGDYIAKKA-G----EG---AKVI---E--LQGIAGTSAARERGEGF-QQAV--AA-H--K-FNV--LAS-QPADFDRIKGLNVMQNLLTA---H---PDVQAVFAQNDEMALGALRALQTAGK---S---DVMVVGFDGTPDGEKAVNDG-K---LAATIAQLPDQIGAKGVETADKVLK--GEK---------------V-----QAKYP--V-DLKL--VVKQ--------
4	PsiBlast_PDB	85.00	45%	-59	- C2 -	2DRI		RBSB_ECOLI	A:[4-270]	------------------------------------------------IALVVSTLNNPFFVSLKDGAQKEA---DKLGYNLVVL-DS--QNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQ---ATK-------GEVVSHIASDNVLGGKIAGDYIAKKA-G----EG---AKVI---E--LQGIAGTSAARERGEGFQQAVA--A--H--K-FNV--LAS-QPADFDRIKGLNVMQNLLTA---H---PDVQAVFAQNDEMALGALRALQTAGK---S---DVMVVGFDGTPDGEKAVNDG-K---LAATIAQLPDQIGAKGVETADKVLK--GEK---------------V-----QAKYP--V-DLKL--VVKQ--------
11	PsiBlast_PDB	84.89	35%	-69	- C2 -	2FN9	-	?	A:[3-281]	-----------------------------------------------KMAIVISTLNNPWFVVLAETAKQRA---EQLGYEATIF-DS--QNDTAKESAHFDAIIAAGYDAIIFNPTDADGSIANVKRAKEAGIPVFCVDRGI--NAR-------GLAVAQIYSDNYYGGVLAGEYFVKFL-K----EKYPDAKEIPYAE--LLGILSAQPTWDRSNGF-HSVVDQY--P--E-FKM--VAQ-QSAEFDRDTAYKVTEQILQA---H---PEIKAIWCGNDAMALGAMKACEAAGR---T---DIYIFGFDGAEDVINAIKEGKQ---IVATIMQFPKLMARLAVEWADQYLR--GER---------------S-----FPEIV--PVTVEL--VTRE--------
5	PsiBlast_PDB	84.71	45%	-60	- C2 -	1DBP		RBSB_ECOLI	A:[4-270]	------------------------------------------------IALVVSTLNNPFFVSLKDGAQKEA---DKLGYNLVVL-DS--QNNPAKELANVQDLTVRGTKILLINPTDSDAVDNAVKMANQANIPVITLDRQ---ATK-------GEVVSHIASDNVLGGKIAGDYIAKKA-G----EG---AKVI---E--LQGIAGTSAARERGEGFQQAVA--A--H--K-FNV--LAS-QPADFDRIKGLNVMQNLLTA---H---PDVQAVFAQNDEMALGALRALQTAGK---S---DVMVVGFDGTPDGEKAVNDG-K---LAATIAQLPDQIGAKGVETADKVLK--GEK---------------V-----QAKYP--V-DLKL--VVKQ--------
19	PsiBlast_PDB	84.65	32%	-66	- C2 -	4RWE		?	A:[8-289]	------------------------------------------------IGVTVGDLANPFFVQITKGVELEARKLAGDKVKVTLV-SS--GYDLGQQVAQIDNFIAAKVDMIILNAADSKGIGPAVKRAKDAGIVVVAVDVA---AEG-------AD--ATITSDNTQAGAMACKYISDRL-K----EK---GNVV---I--INGPP-VSAIQNRVEGC-ESEF--K--K--Y-PDIKVLSSNQNAKGSREGGLEVMTSLLAV---N---PKIDGVFAINDPTAIGADLAAKQAQR---N---EFFIVGVDGSPDAEEALKRG-GNTLFVATPAQDPQVMASKAVEVGYGILQ--GNP---------------A-----PKDPI--LIPVTL--IDKNNISTYKGW
45	HHSearch	84.64	34%	-58	- C2 -	2VK2		YTFQ_ECOLI	A:[2-290]	---------------------------------------------PLTVGFSQVGSESGWRAAETNVAKSEA---EKRGITLKIA-DG--QQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRS---IDVKDK----SLYMTTVTADNILEGKLIGDWLVKEV-N----GKP--CNVV---E--LQGTVGASVAIDRKKGF-AEAI--KNAP--N-IKI--IRS-QSGDFTRSKGKEVMESFIKAENNG---KNICMVYAHNDDMVIGAIQAIKEAGL---KPGKDILTGSIDGVPDIYKAMMDG-E---ANASVELTP-NMAGPAFDALEKYKK--DGT---------------MP----EKLTL--T-KSTL--YLPDTAKEE-LE
6	PsiBlast_PDB	84.25	44%	-70	- C2 -	1BA2	-	RBSB_ECOLI	A:[4-270]	------------------------------------------------IALVVSTLNNPFFVSLKDGAQKEA---DKLGYNLVVL-DS--QNNPAKELANVQDLTVRGTKILLINPTRSDAVGNAVKMANQANIPVITLDRQ---ATK-------GEVVSHIASDNVLGGKIAGDYIAKKA-G----EG---AKVI---E--LQGIAGTSAARERGEGFQQAVA--A--H--K-FNV--LAS-QPADFDRIKGLNVMQNLLTA---H---PDVQAVFAQNDEMALGALRALQTAGK---S---DVMVVGFDGTPDGEKAVNDG-K---LAATIAQLPDQIGAKGVETADKVLK--GEK---------------V-----QAKYP--V-DLKL--VVKQ--------
8	PsiBlast_PDB	83.74	44%	-58	- C2 -	1DRK		RBSB_ECOLI	A:[4-270]	------------------------------------------------IALVVSTLNNPFFVSLKDGAQKEA---DKLGYNLVVL-DS--QNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQ---ATK-------GEVVSHIASDNVLGGKIAGDYIAKKA-G----EG---AKVI---E--LQGTAATSAARERGEGFQQAVA--A--H--K-FNV--LAS-QPADFDRIKGLNVMQNLLTA---H---PDVQAVFAQNDEMALGALRALQTAGK---S---DVMVVGFDGTPDGEKAVNDG-K---LAATIAQLPDQIGAKGVETADKVLK--GEK---------------V-----QAKYP--V-DLKL--VVKQ--------
10	PsiBlast_PDB	83.57	35%	-57	- C2 -	2FN8		?	A:[4-288]	-----------------------------------------------KMAIVISTLNNPWFVVLAETAKQRA---EQLGYEATIF-DS--QNDTAKESAHFDAIIAAGYDAIIFNPTDADGSIANVKRAKEAGIPVFCVDRGI--NAR-------GLAVAQIYSDNYYGGVLMGEYFVKFL-K----EKYPDAKEIPYAE--LLGILSAQPTWDRSNGF-HSVVDQY--P--E-FKM--VAQ-QSAEFDRDTAYKVTEQILQA---H---PEIKAIWCGNDAMALGAMKACEAAGR---T---DIYIFGFDGAEDVINAIKEGKQ---IVATIMQFPKLMARLAVEWADQYLR--GER---------------S-----FPEIV--PVTVEL--VTRENIDKY-TA
7	PsiBlast_PDB	82.86	44%	-55	- C2 -	1DRJ		RBSB_ECOLI	A:[4-270]	------------------------------------------------IALVVSTLNNPFFVSLKDGAQKEA---DKLGYNLVVL-DS--QNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQ---ATK-------GEVVSHIASDNVLGGKIAGDYIAKKA-G----EG---AKVI---E--LQGIARTSAARERGEGFQQAVA--A--H--K-FNV--LAS-QPADFDRIKGLNVMQNLLTA---H---PDVQAVFAQNDEMALGALRALQTAGK---S---DVMVVGFDGTPDGEKAVNDG-K---LAATIAQLPDQIGAKGVETADKVLK--GEK---------------V-----QAKYP--V-DLKL--VVKQ--------
44	HHSearch	81.95	36%	-72	- C2 -	2FN9	-	?	A:[2-266]	----------------------------------------------GKMAIVISTLNNPWFVVLAETAKQRA---EQLGYEATIF-DS--QNDTAKESAHFDAIIAAGYDAIIFNPTDADGSIANVKRAKEAGIPVFCVDRG---INAR------GLAVAQIYSDNYYGGVLAGEYFVKFL-KEKYPDA---KEIP---YAELLGILSAQPTWDRSNGF-HSVV--DQ-Y--PEFKM--VAQ-QSAEFDRDTAYKVTEQILQA---H---PEIKAIWCGNDAMALGAMKACEAAGR---T---DIYIFGFDGAEDVINAIKEGKQ---IVATIMQFPKLMARLAVEWADQYLR--GER---------------S-----FPEIV--P-VTVE--LVTRE-------
39	HHSearch	81.36	30%	-81	- C2 -	1GUD		ALSB_ECOLI	A:[3-288]	-----------------------------------------------EYAVVLKTLSNPFWVDMKKGIEDEA---KTLGVSVDIF-ASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARAWKKGIYLVNLDEK---IDMDNLKKAGGNVEAFVTTDNVAVGAKGASFIIDKL------GAEG-GEVA---I--IEGKAGNASGEARRNGA-TEAF--KK-AS-Q-IKL--VAS-QPADWDRIKALDVATNVLQR---N---PNIKAIYCANDTMAMGVAQAVANAGK---TG--KVLVVGTDGIPEARKMVEAG-Q---MTATVAQNPADIGATGLKLMVDAEK--SGKV--------------IPLDKAPEFKL--V-DSIL--VTQ---------
43	HHSearch	81.30	27%	-57	- C2 -	2H3H		?	A:[2-293]	----------------------------------------------LTIGVIGKS-VHPYWSQVEQGVKAAG---KALGVDTKFFVPQ--KEDINAQLQMLESFIAEGVNGIAIAPSDPTAVIPTIKKALEMGIPVVTLDTD---SPD-------SGRYVYIGTDNYQAGYTAGLIMKELL-G----GK---GKVV---I--GTGSLTAMNSLQRIQGF-KDAI--KD-S--E-IEI--VDI-LNDEEDGARAVSLAEAALNA---H---PDLDAFFGVYAYNGPAQALVVKNAGK---VG--KVKIVCFDTTPDILQYVKEG-V---IQATMGQRPYMMGYLSVTVLYLMNK--IGVQNTLMMLPKVKVDGKV-----DYVID--T-GVDV--VTPENLDEY-LK
12	PsiBlast_PDB	80.17	35%	-64	- C2 -	2VK2		YTFQ_ECOLI	A:[28-291]	-----------------------------------------------------------------------A---EKRGITLKIA-DG--QQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDK-------SLYMTTVTADNILEGKLIGDWLVKEVNG----KP---CNVV---E--LQGTVGASVAIDRKKGF-AEAI--K--NAPN-IKI--IRS-QSGDFTRSKGKEVMESFIKA---ENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGK---DILTGSIDGVPDIYKAMMDG-E---ANASVELTPNMAGPAF--DALEKYKKDGTM---------------P-----EKLTLTKS-TLYLPDTAKEELEKK-KN
14	PsiBlast_PDB	78.72	33%	-55	- C2 -	4RSM		?	A:[14-286]	-----------------------------------------------RIGVTVYDMSS-FITAGKEGMDAYA---KDNNIELIWN-SA--NLDVSTQASQVDSMINQGVDAIIVVPVQADSLAPQVASAKAKGIPLVPVNAA---LDS-------KDIAGNVQPDDVAAGAQEMQMMADRL-G----GK---GNIV---I--LQGPLGQSGELDRSKGI-EQVL--A--K--Y-PDIKVLAK-DTANWKRDEAVNKMKNWISG---FG--PQIDGVVAQNDDMGLGALQALKESGR---T---GVPIVGIDGIEDGLNAVKSG-D---FIGTSLQNGTVELAAGLAVANRLAK--GEP---------------V-----NKEPV--Y-IMPA--ITKDNVDVA-IE
9	PsiBlast_PDB	48.23	41%	21	- C2 -	4ZJP		?	A:[23-292]	-------------------------------------------MQE-TIALTVSTLDNPFFVSLKDGAQKKA---TELGYKLVVL-DS--QNDPSKELSNVEDLTVRGAKVLLINPTDSAAVSNAVAIANRNKIPVITLDRG---AAK-------GEVVSHIASDNVAGGKMAGDFIAQKL-G----DG---AKVI---Q--LEGLAGTSAARERGEGFKQAIE--A--H--K-FDV--LAS-QPADFDRTKGLNVTENLLAS---K---GSVQAIFAQNDEMALGALRAISAAG----K---KVLVVGFDGTEDGVKAVKSG-K---LAATVAQQPELIGSLGVETADKILK--GEK---------------V-----DAKIP--V-ALKV--VTE---------